FFCP PHASE1:Mm9::chr5:145726662..145726746,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=75788 | |EntrezGene=75788 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q9CUN6,E9Q4K9,E9PYU8,Q8BSC0 | |UniProt=Q9CUN6,E9Q4K9,E9PYU8,Q8BSC0 | ||
|association_with_transcript=0bp_to_ENSMUST00000085684,ENSMUST00000100461,ENSMUST00000110677,NM_001038627,NM_029438,uc009alv.1,uc009alw.1_5end | |association_with_transcript=0bp_to_ENSMUST00000085684,ENSMUST00000100461,ENSMUST00000110677,NM_001038627,NM_029438,uc009alv.1,uc009alw.1_5end | ||
|cluster_id=chr5:145726662..145726746,- | |||
|description=CAGE_peak_1_at_Smurf1_5end | |description=CAGE_peak_1_at_Smurf1_5end | ||
|id=chr5:145726662..145726746,- | |id=chr5:145726662..145726746,- | ||
|ontology_enrichment_celltype=CL:0000393!8.06e-12!39;CL:0000211!8.06e-12!39;CL:0002321!1.51e-11!70;CL:0000220!1.51e-11!70;CL:0000055!6.97e-11!50;CL:0000540!1.65e-09!33;CL:0000047!1.65e-09!33;CL:0000031!1.65e-09!33;CL:0000404!1.65e-09!33;CL:0002319!1.90e-09!43;CL:0000221!2.25e-09!44;CL:0000133!2.25e-09!44;CL:0000117!2.36e-08!23;CL:0000337!2.36e-08!23 | |ontology_enrichment_celltype=CL:0000393!8.06e-12!39;CL:0000211!8.06e-12!39;CL:0002321!1.51e-11!70;CL:0000220!1.51e-11!70;CL:0000055!6.97e-11!50;CL:0000540!1.65e-09!33;CL:0000047!1.65e-09!33;CL:0000031!1.65e-09!33;CL:0000404!1.65e-09!33;CL:0002319!1.90e-09!43;CL:0000221!2.25e-09!44;CL:0000133!2.25e-09!44;CL:0000117!2.36e-08!23;CL:0000337!2.36e-08!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,8.06e-12,39;CL:0000211,8.06e-12,39;CL:0002321,1.51e-11,70;CL:0000540,1.65e-09,33;CL:0000047,1.65e-09,33;CL:0000031,1.65e-09,33;CL:0000404,1.65e-09,33;CL:0002319,1.90e-09,43;CL:0000221,2.25e-09,44;CL:0000133,2.25e-09,44;CL:0000117,2.36e-08,23;CL:0000337,2.36e-08,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.68e-08!75;UBERON:0001016!3.68e-08!75;UBERON:0002020!2.71e-07!34;UBERON:0001017!2.97e-07!73;UBERON:0005743!2.97e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.36e-08,95;UBERON:0000924,1.36e-08,95;UBERON:0006601,1.36e-08,95;UBERON:0001016,3.68e-08,75;UBERON:0002020,2.71e-07,34;UBERON:0001017,2.97e-07,73 | |||
|phase1_expression=19.3780104996801,27.5690572035095,30.0299497997094,21.4749590027849,20.5367249278002,21.9921846204576,13.0823078733494,19.8849918100027,19.851209823385,14.9801296846076,5.30775701499065,8.45584885350566,16.4352700733957,20.4563741660454,1.66554880907831,3.23960427823721,0.699561878128147,5.52058789376916,7.81552271552711,4.66828616977833,24.322380983206,5.06383851124515,2.35079810225042,11.0394771727451,11.4704640533585,31.5827580263261,24.1226717849082,20.9007095705312,8.93110071444957,13.1055667475164,12.8603696180077,2.54012269383853,1.84519436275371,0,6.06588401477677,6.81562045969819,6.32925004413344,14.2300754450549,9.37602413428561,10.9939986234498,13.5293242247133,12.294818729252,12.62326917881,21.2765622378726,24.9387250800006,30.1016673545158,14.8654355426127,11.3373081317832,18.2339531669612,16.5265414213141,12.5987779462826,17.2503077237966,11.4092172119261,22.4862264023517,21.1739093459752,33.4437266846731,25.7880095944881,19.0798674142654,40.4632921719196,32.797440714866,36.7622214033584,23.041428180701,17.7858959222228,24.2972923665978,12.8552627133707,23.4458437932213,21.8708080678435,19.5951335713993,22.9154043201736,26.191152036348,23.7667206327062,32.5642122220336,26.7250934551452,22.0483438586917,21.9486128631761,28.4957823849107,18.7196997698961,18.5146640223522,16.7431121249305,40.3572040454393,38.2418350258072,32.2966289745191,17.8677119360884,13.5063026407603,16.9606055032259,32.4091444021034,24.4879290974457,29.8239113320481,60.7324070532136,71.0372665003784,13.3337664802772,6.0229671388697,16.9992833426938,9.17495425784289,11.0461990966104,11.6486990645307,14.1848864333069,12.9527045159324,7.79358013808606,7.42013106471715,17.0420537929783,32.0816193535795,45.8649431471962,21.3320010945999,56.9371437859493,56.2458901354719,53.0800667265522,13.7020655662872,33.144049106838,14.1020032111584,11.450031566565,7.30717147949139,12.4532368518272,8.44046787094686,14.8161770990988,10.8073268543521,21.2587672251562,22.846698393346,4.42305275974937,21.0296904931632,11.0420759230197,8.727754556434,13.0474232852686,10.2473278954042,17.8029700791437,13.5392239260553,5.51149572727233,3.59941638596045,5.08280908292259,16.7765516133401,20.5875271268382,28.774846633846,21.0327427432655,16.3657892691412,12.0517065844545,17.5220564113178,20.9789089531652,10.9478134136882,15.1633655060205,15.993581047372,11.0602376518298,12.8745178482745,13.8647839950119,17.6324636867787,19.1862927606745,16.7828973573153,21.5513966487376,14.2286853906459,17.4610074275602,21.1798809787958,15.3077478022636,10.7405908889512,17.7950239504383,17.7608604926305,17.4914815946752,16.5198441459349,2.80885274925294,1.80143534980301,4.83077948972507,15.7415587126981,15.4787199587523,10.4435995647389,19.8865577891577,15.9379027715397,14.1925743856388,12.556833016522,12.0723030629829,22.1854150497622,15.6331857417806,17.8942535846214,21.5643033391976,20.7603982143972,14.0512073786272,19.0573114639728,13.0379768109759,26.3435807690968,15.1992640172547,10.0491215332147,14.5036010363959,12.3085436086032,15.0774929746849,12.7060620512706,11.7860363237781,10.0819581839656,14.7104009078799,11.8583247401288,12.0640900224129,12.1363447945102,11.1129529657898,14.3811105384675,13.6166971421057,17.5244320463843,13.2767530667157,12.7958334122896,23.6686244913469,15.4775009162439,16.8738663835834,22.8642772842439,19.16067074865,14.1705742060418,11.303908404579,11.5993334086492,8.00422093135302,5.6727335943472,4.91397487783007,3.37293168577281,3.65148218499305,5.06472035480075,5.0925170356284,8.63088412352432,13.1329533687779,4.94210543738547,15.814502718009,13.7692150637346,11.8574315783533,11.6186283855671,8.43167843552987,9.16642690590398,23.0941487708256,14.0223644710159,18.740972290833,17.9929790921699,16.6630076284836,18.7607008334834,18.8054476299951,38.0510613322708,23.6452716159286,28.1260155853944,29.1802226643201,22.9408640602033,23.13978757003,23.2884984316234,12.0633027151418,16.3171705145613,12.7858710984949,16.8321415245887,11.559642479121,17.8161763620149,15.7377547561608,11.8661335786055,16.7219356290616,16.0079885161622,13.3562506594335,24.1358485932078,30.0778210011232,45.0091683954244,16.1924280669958,25.1340037803728,22.9266911208984,10.2822821254978,15.8972895433261,17.2723635557238,23.6186091062685,17.1568927891437,14.6019652173959,11.4106898992841,16.0231485191318,8.11001842950362,10.9261700365886,14.1420168054207,21.4495483329624,18.1766864738753,19.6073558111597,10.7452497698177,13.7044191147498,18.5643977846736,13.2771446243977,10.2634823597847,13.712020480972,17.1469628025274,14.896579625951,19.2638323010236,19.2522354104482,22.8348711835949,26.2832313031356,29.0209937083434,10.1443063105282,33.4719093471204,29.2250612319589,24.3061087460468,18.2639686324799,18.2196398717018,14.5740418314925,17.9862542950194,7.00570611271196,12.5895989457566,9.81530995059472,5.27431679613135,6.56132293060921,5.49067615695654,9.34881364966204,8.81694149639045,12.1615976947893,10.5013767981662,16.449471666219,16.062237903021,16.0927957824484,19.2361232333311,16.1588297172171,16.7231789517178,21.8205123114887,12.5642852152334,15.5537967950151,14.2908042009993,85.6813266799969,19.2876344396733,15.8840150838814,14.0004855607714,14.3367404060282,13.1785777882807,23.1193760132135,26.04087696879,19.6086974076079,42.0356370237251,56.1658512202838,17.696622755178,11.149886840959,7.60061083019722,7.7952493786677,9.30938817470904,9.73538638428198,12.1397404015169,9.89519832069667,13.024672043311,15.774808977585,13.6115349934735,12.4746087346883,17.4143433368996,19.8690733708667,17.2315091547561,17.7588762699252,10.7656627931371,18.1315385673205,22.2168033137019,25.1494517104584,18.3151624267265,27.0104157639623,16.551879433167,18.6368108063632,17.4923589872727,18.9055519435001,24.9187114398347,20.5524755931193,20.3956352295219,16.2005400055633,12.158672487054,15.8599843144472,18.1216109113137,15.7756768327949,20.3502685434526,13.6586884603307,14.8295097411659,13.6248555708189,20.0389424210515,15.1127774905098,17.9250499797838,13.7995260124481,18.4468964587572,19.5179060915485,15.4673599936582,19.945641091085,19.5276714834851,21.9403491410443,26.6724467118521,18.5414921511769,21.0271050305439,18.5438655361488,15.8974833745149,12.0004238334895,17.9250564220931,16.4520971063651,14.6799880798652,18.7277667026508,20.5613497176774,18.8415812058956,16.8364615320219,16.4322977753493,10.661703161497,16.0157274467635,18.6173471689815,12.6861623382604,18.43748410113,22.3771668738124,23.4821943261669,15.9073493742878,17.8342974860088,18.7462565427467,18.9708620442783,12.0571274522619 | |phase1_expression=19.3780104996801,27.5690572035095,30.0299497997094,21.4749590027849,20.5367249278002,21.9921846204576,13.0823078733494,19.8849918100027,19.851209823385,14.9801296846076,5.30775701499065,8.45584885350566,16.4352700733957,20.4563741660454,1.66554880907831,3.23960427823721,0.699561878128147,5.52058789376916,7.81552271552711,4.66828616977833,24.322380983206,5.06383851124515,2.35079810225042,11.0394771727451,11.4704640533585,31.5827580263261,24.1226717849082,20.9007095705312,8.93110071444957,13.1055667475164,12.8603696180077,2.54012269383853,1.84519436275371,0,6.06588401477677,6.81562045969819,6.32925004413344,14.2300754450549,9.37602413428561,10.9939986234498,13.5293242247133,12.294818729252,12.62326917881,21.2765622378726,24.9387250800006,30.1016673545158,14.8654355426127,11.3373081317832,18.2339531669612,16.5265414213141,12.5987779462826,17.2503077237966,11.4092172119261,22.4862264023517,21.1739093459752,33.4437266846731,25.7880095944881,19.0798674142654,40.4632921719196,32.797440714866,36.7622214033584,23.041428180701,17.7858959222228,24.2972923665978,12.8552627133707,23.4458437932213,21.8708080678435,19.5951335713993,22.9154043201736,26.191152036348,23.7667206327062,32.5642122220336,26.7250934551452,22.0483438586917,21.9486128631761,28.4957823849107,18.7196997698961,18.5146640223522,16.7431121249305,40.3572040454393,38.2418350258072,32.2966289745191,17.8677119360884,13.5063026407603,16.9606055032259,32.4091444021034,24.4879290974457,29.8239113320481,60.7324070532136,71.0372665003784,13.3337664802772,6.0229671388697,16.9992833426938,9.17495425784289,11.0461990966104,11.6486990645307,14.1848864333069,12.9527045159324,7.79358013808606,7.42013106471715,17.0420537929783,32.0816193535795,45.8649431471962,21.3320010945999,56.9371437859493,56.2458901354719,53.0800667265522,13.7020655662872,33.144049106838,14.1020032111584,11.450031566565,7.30717147949139,12.4532368518272,8.44046787094686,14.8161770990988,10.8073268543521,21.2587672251562,22.846698393346,4.42305275974937,21.0296904931632,11.0420759230197,8.727754556434,13.0474232852686,10.2473278954042,17.8029700791437,13.5392239260553,5.51149572727233,3.59941638596045,5.08280908292259,16.7765516133401,20.5875271268382,28.774846633846,21.0327427432655,16.3657892691412,12.0517065844545,17.5220564113178,20.9789089531652,10.9478134136882,15.1633655060205,15.993581047372,11.0602376518298,12.8745178482745,13.8647839950119,17.6324636867787,19.1862927606745,16.7828973573153,21.5513966487376,14.2286853906459,17.4610074275602,21.1798809787958,15.3077478022636,10.7405908889512,17.7950239504383,17.7608604926305,17.4914815946752,16.5198441459349,2.80885274925294,1.80143534980301,4.83077948972507,15.7415587126981,15.4787199587523,10.4435995647389,19.8865577891577,15.9379027715397,14.1925743856388,12.556833016522,12.0723030629829,22.1854150497622,15.6331857417806,17.8942535846214,21.5643033391976,20.7603982143972,14.0512073786272,19.0573114639728,13.0379768109759,26.3435807690968,15.1992640172547,10.0491215332147,14.5036010363959,12.3085436086032,15.0774929746849,12.7060620512706,11.7860363237781,10.0819581839656,14.7104009078799,11.8583247401288,12.0640900224129,12.1363447945102,11.1129529657898,14.3811105384675,13.6166971421057,17.5244320463843,13.2767530667157,12.7958334122896,23.6686244913469,15.4775009162439,16.8738663835834,22.8642772842439,19.16067074865,14.1705742060418,11.303908404579,11.5993334086492,8.00422093135302,5.6727335943472,4.91397487783007,3.37293168577281,3.65148218499305,5.06472035480075,5.0925170356284,8.63088412352432,13.1329533687779,4.94210543738547,15.814502718009,13.7692150637346,11.8574315783533,11.6186283855671,8.43167843552987,9.16642690590398,23.0941487708256,14.0223644710159,18.740972290833,17.9929790921699,16.6630076284836,18.7607008334834,18.8054476299951,38.0510613322708,23.6452716159286,28.1260155853944,29.1802226643201,22.9408640602033,23.13978757003,23.2884984316234,12.0633027151418,16.3171705145613,12.7858710984949,16.8321415245887,11.559642479121,17.8161763620149,15.7377547561608,11.8661335786055,16.7219356290616,16.0079885161622,13.3562506594335,24.1358485932078,30.0778210011232,45.0091683954244,16.1924280669958,25.1340037803728,22.9266911208984,10.2822821254978,15.8972895433261,17.2723635557238,23.6186091062685,17.1568927891437,14.6019652173959,11.4106898992841,16.0231485191318,8.11001842950362,10.9261700365886,14.1420168054207,21.4495483329624,18.1766864738753,19.6073558111597,10.7452497698177,13.7044191147498,18.5643977846736,13.2771446243977,10.2634823597847,13.712020480972,17.1469628025274,14.896579625951,19.2638323010236,19.2522354104482,22.8348711835949,26.2832313031356,29.0209937083434,10.1443063105282,33.4719093471204,29.2250612319589,24.3061087460468,18.2639686324799,18.2196398717018,14.5740418314925,17.9862542950194,7.00570611271196,12.5895989457566,9.81530995059472,5.27431679613135,6.56132293060921,5.49067615695654,9.34881364966204,8.81694149639045,12.1615976947893,10.5013767981662,16.449471666219,16.062237903021,16.0927957824484,19.2361232333311,16.1588297172171,16.7231789517178,21.8205123114887,12.5642852152334,15.5537967950151,14.2908042009993,85.6813266799969,19.2876344396733,15.8840150838814,14.0004855607714,14.3367404060282,13.1785777882807,23.1193760132135,26.04087696879,19.6086974076079,42.0356370237251,56.1658512202838,17.696622755178,11.149886840959,7.60061083019722,7.7952493786677,9.30938817470904,9.73538638428198,12.1397404015169,9.89519832069667,13.024672043311,15.774808977585,13.6115349934735,12.4746087346883,17.4143433368996,19.8690733708667,17.2315091547561,17.7588762699252,10.7656627931371,18.1315385673205,22.2168033137019,25.1494517104584,18.3151624267265,27.0104157639623,16.551879433167,18.6368108063632,17.4923589872727,18.9055519435001,24.9187114398347,20.5524755931193,20.3956352295219,16.2005400055633,12.158672487054,15.8599843144472,18.1216109113137,15.7756768327949,20.3502685434526,13.6586884603307,14.8295097411659,13.6248555708189,20.0389424210515,15.1127774905098,17.9250499797838,13.7995260124481,18.4468964587572,19.5179060915485,15.4673599936582,19.945641091085,19.5276714834851,21.9403491410443,26.6724467118521,18.5414921511769,21.0271050305439,18.5438655361488,15.8974833745149,12.0004238334895,17.9250564220931,16.4520971063651,14.6799880798652,18.7277667026508,20.5613497176774,18.8415812058956,16.8364615320219,16.4322977753493,10.661703161497,16.0157274467635,18.6173471689815,12.6861623382604,18.43748410113,22.3771668738124,23.4821943261669,15.9073493742878,17.8342974860088,18.7462565427467,18.9708620442783,12.0571274522619 | ||
|short_description=p1@Smurf1 | |short_description=p1@Smurf1 | ||
}} | }} |
Latest revision as of 17:23, 25 September 2015
Short description: | p1@Smurf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Smurf1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000085684, ENSMUST00000100461, ENSMUST00000110677, NM_001038627, NM_029438, uc009alv.1, uc009alw.1_5end |
EntrezGene: | Smurf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 8.06e-12 | 39 |
electrically active cell | 8.06e-12 | 39 |
embryonic cell | 1.51e-11 | 70 |
neuron | 1.65e-09 | 33 |
neuronal stem cell | 1.65e-09 | 33 |
neuroblast | 1.65e-09 | 33 |
electrically signaling cell | 1.65e-09 | 33 |
neural cell | 1.90e-09 | 43 |
ectodermal cell | 2.25e-09 | 44 |
neurectodermal cell | 2.25e-09 | 44 |
CNS neuron (sensu Vertebrata) | 2.36e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.36e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.36e-08 | 95 |
ectoderm | 1.36e-08 | 95 |
presumptive ectoderm | 1.36e-08 | 95 |
nervous system | 3.68e-08 | 75 |
gray matter | 2.71e-07 | 34 |
central nervous system | 2.97e-07 | 73 |