FFCP PHASE1:Mm9::chr10:126515942..126515974,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:126515942..126515974,+
|short_description=p1@Agap2
|description=CAGE_peak_1_at_Agap2_5end
|association_with_transcript=0bp_to_ENSMUST00000039259,ENSMUST00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=216439 | |EntrezGene=216439 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UHD9 | |UniProt=Q3UHD9 | ||
|association_with_transcript=0bp_to_ENSMUST00000039259,ENSMUST00000105254,NM_001033263,uc007hhx.1,uc007hhy.1_5end | |||
|cluster_id=chr10:126515942..126515974,+ | |||
|description=CAGE_peak_1_at_Agap2_5end | |||
|id=chr10:126515942..126515974,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.20e-13!23;CL:0000337!3.20e-13!23;CL:0000540!7.46e-11!33;CL:0000047!7.46e-11!33;CL:0000031!7.46e-11!33;CL:0000404!7.46e-11!33;CL:0002319!3.12e-09!43;CL:0000393!4.61e-09!39;CL:0000211!4.61e-09!39;CL:0000221!4.92e-09!44;CL:0000133!4.92e-09!44;CL:0000055!1.98e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.88e-15,23;CL:0000337,3.88e-15,23;CL:0000540,1.65e-10,33;CL:0000047,1.65e-10,33;CL:0000031,1.65e-10,33;CL:0000404,1.65e-10,33;CL:0002319,1.46e-08,43;CL:0000221,4.34e-08,44;CL:0000133,4.34e-08,44;CL:0000393,9.17e-08,39;CL:0000211,9.17e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.15e-27!73;UBERON:0005743!9.15e-27!73;UBERON:0000073!2.14e-25!75;UBERON:0001016!2.14e-25!75;UBERON:0001049!1.59e-24!52;UBERON:0005068!1.59e-24!52;UBERON:0006241!1.59e-24!52;UBERON:0007135!1.59e-24!52;UBERON:0002346!6.35e-24!71;UBERON:0003075!6.35e-24!71;UBERON:0007284!6.35e-24!71;UBERON:0000955!6.59e-24!50;UBERON:0006238!6.59e-24!50;UBERON:0002616!3.76e-23!49;UBERON:0000033!4.17e-22!63;UBERON:0004121!5.40e-21!102;UBERON:0000924!5.40e-21!102;UBERON:0006601!5.40e-21!102;UBERON:0003056!7.21e-20!49;UBERON:0003080!1.95e-19!40;UBERON:0002020!2.17e-19!34;UBERON:0002780!7.73e-19!39;UBERON:0001890!7.73e-19!39;UBERON:0006240!7.73e-19!39;UBERON:0002791!9.46e-17!29;UBERON:0003528!9.46e-17!29;UBERON:0001893!9.46e-17!29;UBERON:0000956!4.46e-12!21;UBERON:0001869!4.46e-12!21;UBERON:0000203!4.46e-12!21;UBERON:0007811!4.76e-11!86;UBERON:0000153!6.64e-11!94;UBERON:0002619!4.50e-10!17;UBERON:0002021!3.85e-08!10;UBERON:0000411!3.85e-08!10;UBERON:0001950!3.85e-08!10;UBERON:0000025!3.89e-07!114;UBERON:0000468!4.16e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.52e-29,54;UBERON:0001017,9.82e-28,73;UBERON:0001049,1.37e-27,52;UBERON:0005068,1.37e-27,52;UBERON:0006241,1.37e-27,52;UBERON:0007135,1.37e-27,52;UBERON:0002346,3.74e-27,64;UBERON:0003075,3.74e-27,64;UBERON:0007284,3.74e-27,64;UBERON:0001016,3.57e-26,75;UBERON:0000955,1.44e-24,47;UBERON:0006238,1.44e-24,47;UBERON:0002616,1.04e-23,46;UBERON:0002020,2.51e-22,34;UBERON:0003056,5.28e-22,49;UBERON:0003080,6.24e-22,40;UBERON:0002780,3.10e-21,39;UBERON:0001890,3.10e-21,39;UBERON:0006240,3.10e-21,39;UBERON:0010371,2.19e-20,73;UBERON:0004121,2.26e-20,95;UBERON:0000924,2.26e-20,95;UBERON:0006601,2.26e-20,95;UBERON:0003528,2.99e-19,29;UBERON:0002791,2.99e-19,29;UBERON:0001893,2.99e-19,29;UBERON:0010314,3.94e-16,92;UBERON:0000956,8.33e-14,21;UBERON:0001869,8.33e-14,21;UBERON:0000203,8.33e-14,21;UBERON:0002619,1.79e-11,17;UBERON:0002021,3.17e-09,10;UBERON:0000411,3.17e-09,10;UBERON:0001950,3.17e-09,10 | |||
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| ||
|short_description=p1@Agap2 | |||
}} | }} |
Latest revision as of 17:16, 25 September 2015
Short description: | p1@Agap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Agap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000039259, ENSMUST00000105254, NM_001033263, uc007hhx.1, uc007hhy.1_5end |
EntrezGene: | Agap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.88e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.88e-15 | 23 |
neuron | 1.65e-10 | 33 |
neuronal stem cell | 1.65e-10 | 33 |
neuroblast | 1.65e-10 | 33 |
electrically signaling cell | 1.65e-10 | 33 |
neural cell | 1.46e-08 | 43 |
ectodermal cell | 4.34e-08 | 44 |
neurectodermal cell | 4.34e-08 | 44 |
electrically responsive cell | 9.17e-08 | 39 |
electrically active cell | 9.17e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.52e-29 | 54 |
central nervous system | 9.82e-28 | 73 |
neural tube | 1.37e-27 | 52 |
neural rod | 1.37e-27 | 52 |
future spinal cord | 1.37e-27 | 52 |
neural keel | 1.37e-27 | 52 |
neurectoderm | 3.74e-27 | 64 |
neural plate | 3.74e-27 | 64 |
presumptive neural plate | 3.74e-27 | 64 |
nervous system | 3.57e-26 | 75 |
brain | 1.44e-24 | 47 |
future brain | 1.44e-24 | 47 |
regional part of brain | 1.04e-23 | 46 |
gray matter | 2.51e-22 | 34 |
pre-chordal neural plate | 5.28e-22 | 49 |
anterior neural tube | 6.24e-22 | 40 |
regional part of forebrain | 3.10e-21 | 39 |
forebrain | 3.10e-21 | 39 |
future forebrain | 3.10e-21 | 39 |
ecto-epithelium | 2.19e-20 | 73 |
ectoderm-derived structure | 2.26e-20 | 95 |
ectoderm | 2.26e-20 | 95 |
presumptive ectoderm | 2.26e-20 | 95 |
brain grey matter | 2.99e-19 | 29 |
regional part of telencephalon | 2.99e-19 | 29 |
telencephalon | 2.99e-19 | 29 |
structure with developmental contribution from neural crest | 3.94e-16 | 92 |
cerebral cortex | 8.33e-14 | 21 |
cerebral hemisphere | 8.33e-14 | 21 |
pallium | 8.33e-14 | 21 |
regional part of cerebral cortex | 1.79e-11 | 17 |
occipital lobe | 3.17e-09 | 10 |
visual cortex | 3.17e-09 | 10 |
neocortex | 3.17e-09 | 10 |