FFCP PHASE1:Mm9::chr5:144125569..144125598,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=170935|HGNC=|MCL_coexpression_id=189|UniProt=Q0QWG9|association_with_transcript=0bp_to_ENSMUST00000010969,NM_133355,uc009ake.1_5end|description=CAGE_peak_1_at_Grid2ip_5end|id=chr5:144125569..144125598,+|ontology_enrichment_celltype=CL:0002319!9.00e-14!43;CL:0000540!9.86e-14!33;CL:0000047!9.86e-14!33;CL:0000031!9.86e-14!33;CL:0000404!9.86e-14!33;CL:0000221!1.66e-13!44;CL:0000133!1.66e-13!44;CL:0000393!5.54e-11!39;CL:0000211!5.54e-11!39;CL:0000055!6.88e-11!50;CL:0000117!4.84e-09!23;CL:0000337!4.84e-09!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.53e-11,33;CL:0000047,1.53e-11,33;CL:0000031,1.53e-11,33;CL:0000404,1.53e-11,33;CL:0002319,4.70e-11,43;CL:0000221,1.12e-10,44;CL:0000133,1.12e-10,44;CL:0000393,4.80e-09,39;CL:0000211,4.80e-09,39;CL:0000117,2.37e-07,23;CL:0000337,2.37e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.85e-29!102;UBERON:0000924!2.85e-29!102;UBERON:0006601!2.85e-29!102;UBERON:0001017!3.98e-29!73;UBERON:0005743!3.98e-29!73;UBERON:0000073!7.18e-28!75;UBERON:0001016!7.18e-28!75;UBERON:0002346!6.15e-26!71;UBERON:0003075!6.15e-26!71;UBERON:0007284!6.15e-26!71;UBERON:0000033!3.02e-19!63;UBERON:0001049!1.96e-18!52;UBERON:0005068!1.96e-18!52;UBERON:0006241!1.96e-18!52;UBERON:0007135!1.96e-18!52;UBERON:0000955!2.79e-18!50;UBERON:0006238!2.79e-18!50;UBERON:0002616!1.49e-17!49;UBERON:0003056!3.03e-14!49;UBERON:0002020!1.20e-12!34;UBERON:0003080!5.57e-12!40;UBERON:0002780!2.16e-11!39;UBERON:0001890!2.16e-11!39;UBERON:0006240!2.16e-11!39;UBERON:0000153!1.39e-10!94;UBERON:0002791!1.93e-10!29;UBERON:0003528!1.93e-10!29;UBERON:0001893!1.93e-10!29;UBERON:0007811!4.27e-09!86;UBERON:0003076!1.27e-07!12;UBERON:0003057!1.27e-07!12;UBERON:0000468!5.38e-07!333;UBERON:0000025!7.78e-07!114;UBERON:0002619!9.19e-07!17;UBERON:0000956!9.92e-07!21;UBERON:0001869!9.92e-07!21;UBERON:0000203!9.92e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.58e-27,73;UBERON:0001016,2.70e-26,75;UBERON:0004121,8.20e-21,95;UBERON:0000924,8.20e-21,95;UBERON:0006601,8.20e-21,95;UBERON:0000073,7.52e-19,54;UBERON:0002346,9.52e-17,64;UBERON:0003075,9.52e-17,64;UBERON:0007284,9.52e-17,64;UBERON:0001049,2.61e-16,52;UBERON:0005068,2.61e-16,52;UBERON:0006241,2.61e-16,52;UBERON:0007135,2.61e-16,52;UBERON:0010314,1.05e-14,92;UBERON:0003076,1.19e-13,12;UBERON:0003057,1.19e-13,12;UBERON:0010371,1.22e-13,73;UBERON:0000955,3.44e-13,47;UBERON:0006238,3.44e-13,47;UBERON:0002616,4.30e-12,46;UBERON:0002020,1.44e-09,34;UBERON:0004733,3.65e-09,6;UBERON:0004732,3.65e-09,6;UBERON:0002028,3.65e-09,6;UBERON:0007277,3.65e-09,6;UBERON:0003080,4.53e-07,40;UBERON:0003528,8.43e-07,29;UBERON:0002791,8.43e-07,29;UBERON:0001893,8.43e-07,29|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,1.09012578190223,0.219686182734472,0.194429899074283,0.279972843250725,1.43752564364972,0,0,0,0,0.573066879877513,0.515672092277442,1.01158230429799,0.528990979272033,1.26766280701236,0,0,0,0,0,0.299600110518405,0.768436610643109,0.311068836925433,0.540023753326763,0,1.71390590642282,1.32521124570968,0.489963196859816,0.766763768145891,0.919218786610021,7.70811166995721,16.7270412891596,12.4421291937557,0.923204014111357,1.55528994124096,0.52091337055676,1.67509799400829,2.8138130501584,0.763991238884051,1.17851434189467,1.42371680799103,0.559198337475902,0,0.0755715601067855,0,0,0,0,0,0.448026887097336,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,1.63286352971307,0.693941307064543,1.82679286987285,1.38369298353635,1.05505848386836,0.940709657085638,0.376999773989026,0,0,0,0.161766849947409,0,0,0,1.46390398505774,2.51336048176146,0,0,0,0,2.24685959107234,4.57500602818627,1.88481528169297,2.9550134432687,2.30143911597297,19.9476522777178,15.7374025175725,0,0,0,0.631325567659422,0.520481771850815,0.229902104433473,0.360124259610698,0.452114453507145,1.02054748726992,0.896796041993948,0.937017245597288,1.55222022443409,1.72454394346274,1.32374256117473,1.05570674498369,0.657587197282725,0.278047249225598,1.39300866608867,0.205782136407943,0.199034266818493,0,0,0,0.414251545071004,1.40715635988658,0.540186184383045,0.710234206755631,1.37734962223183,0.308534225774757,0.930135779001631,0.536546802799238,0.116765342367169,0,0,0.0810688095458557,0.146199987425332,0.219550115291051,0,2.10289948564127,1.3377599609307,0,0,2.34617075588757,0.928946687441754,0.515469845288373,0.605050573870028,0.444756087689741,0.380451252225118,0,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.569003702859245,0.228497025219458,2.25415471346161,0.407302655690628,0.387904974335251,0.140271639780637,0.189709611372772,0,0.156998727841375,0,0,0,0.196558995113203,0.224862112384854,0,0,0,0.287696137450811,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0,0.947457058852424,0.488894929326078,0.339490171550376,0,0.335012514883631,0.476087281772027,0,0.315270288212382,0.44292937929755,0.637819074629948,0.327726629431476,0,0,0,0,0,0,2.0871576698413,2.57865710502847,0,0,1.57754109708128,0.780877488593277,3.23135096599198,2.15071918157297,1.55959071857676,2.54768877709949,0.404810701674894,0.876767573733936,2.37172666767914,4.17717711348349,0,0.35613120733451,0.325773918707152,0,0,1.21390318077491,0.604647113929502,0.188605079755898,0,0.307435147943927,0,0.363533729477506,0,0,0,0,0.340439605753788,0.18006109403131,0.517434735131018,0,0.354680467284547,0.356737635204141,0.493647061806363,0.608929898229199,0,0,0,0.16488625294148,0.161464426695906,0.120625849856312,0.238744688006273,0.164140899745061,0,3.33765543618917,0,0,0,0,0,0,0.169978429993855,0,0,0,1.10717597753397,0.406638934253697,0.108005340821801,0.418176592028937,0,0.269728692769641,0.495920734352016,0.26175594198403,0,0,0,0,0,0.194451188344048,0,0,0,0.13020438484395,0,0,0,0,0.405450430580328,0.308132871494482,0,0.358053391334963,0,0,0,0,0.0762068066549998,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,1.6942555278512,0.460325236507177,1.14579102687879,0.515559547031063,2.05524755931193,3.0215755895588,0.675022500231806,0.900642406448441,0.906284817968409,3.62432218226274,0.31136204275253,1.59609949360412,1.36586884603307,0.486213434136588,0.419226325255965,0.735374033800057,0,0.412070114477788,0.64183841918363,0.252697211763798,0.50695859978048,0.188626341386076,0.37456602987953,0.384150914429216,0.631790158511746,0.476293691283074,0.695305955669133,0,0.412085900803307,0.588795680537589,0.342869252385415,0.354951612318675,0,0.581385666529314,0.564656282491984,0,0.548783918618318,0,0.407412341537585,0.561142271657738,0.118635018124174,0.197008964751127,0.409231043169689,0.619747364743864,0.192906610981141,0.999242311751784,0.467863216890817,0.214871054048298,0.57386499620653,0.220591419119515,0|short_description=p1@Grid2ip}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=170935 | |||
|HGNC= | |||
|MCL_coexpression_id=189 | |||
|TSSclassifier=NA | |||
|UniProt=Q0QWG9 | |||
|association_with_transcript=0bp_to_ENSMUST00000010969,NM_133355,uc009ake.1_5end | |||
|cluster_id=chr5:144125569..144125598,+ | |||
|description=CAGE_peak_1_at_Grid2ip_5end | |||
|id=chr5:144125569..144125598,+ | |||
|ontology_enrichment_celltype=CL:0002319!9.00e-14!43;CL:0000540!9.86e-14!33;CL:0000047!9.86e-14!33;CL:0000031!9.86e-14!33;CL:0000404!9.86e-14!33;CL:0000221!1.66e-13!44;CL:0000133!1.66e-13!44;CL:0000393!5.54e-11!39;CL:0000211!5.54e-11!39;CL:0000055!6.88e-11!50;CL:0000117!4.84e-09!23;CL:0000337!4.84e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.53e-11,33;CL:0000047,1.53e-11,33;CL:0000031,1.53e-11,33;CL:0000404,1.53e-11,33;CL:0002319,4.70e-11,43;CL:0000221,1.12e-10,44;CL:0000133,1.12e-10,44;CL:0000393,4.80e-09,39;CL:0000211,4.80e-09,39;CL:0000117,2.37e-07,23;CL:0000337,2.37e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.85e-29!102;UBERON:0000924!2.85e-29!102;UBERON:0006601!2.85e-29!102;UBERON:0001017!3.98e-29!73;UBERON:0005743!3.98e-29!73;UBERON:0000073!7.18e-28!75;UBERON:0001016!7.18e-28!75;UBERON:0002346!6.15e-26!71;UBERON:0003075!6.15e-26!71;UBERON:0007284!6.15e-26!71;UBERON:0000033!3.02e-19!63;UBERON:0001049!1.96e-18!52;UBERON:0005068!1.96e-18!52;UBERON:0006241!1.96e-18!52;UBERON:0007135!1.96e-18!52;UBERON:0000955!2.79e-18!50;UBERON:0006238!2.79e-18!50;UBERON:0002616!1.49e-17!49;UBERON:0003056!3.03e-14!49;UBERON:0002020!1.20e-12!34;UBERON:0003080!5.57e-12!40;UBERON:0002780!2.16e-11!39;UBERON:0001890!2.16e-11!39;UBERON:0006240!2.16e-11!39;UBERON:0000153!1.39e-10!94;UBERON:0002791!1.93e-10!29;UBERON:0003528!1.93e-10!29;UBERON:0001893!1.93e-10!29;UBERON:0007811!4.27e-09!86;UBERON:0003076!1.27e-07!12;UBERON:0003057!1.27e-07!12;UBERON:0000468!5.38e-07!333;UBERON:0000025!7.78e-07!114;UBERON:0002619!9.19e-07!17;UBERON:0000956!9.92e-07!21;UBERON:0001869!9.92e-07!21;UBERON:0000203!9.92e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.58e-27,73;UBERON:0001016,2.70e-26,75;UBERON:0004121,8.20e-21,95;UBERON:0000924,8.20e-21,95;UBERON:0006601,8.20e-21,95;UBERON:0000073,7.52e-19,54;UBERON:0002346,9.52e-17,64;UBERON:0003075,9.52e-17,64;UBERON:0007284,9.52e-17,64;UBERON:0001049,2.61e-16,52;UBERON:0005068,2.61e-16,52;UBERON:0006241,2.61e-16,52;UBERON:0007135,2.61e-16,52;UBERON:0010314,1.05e-14,92;UBERON:0003076,1.19e-13,12;UBERON:0003057,1.19e-13,12;UBERON:0010371,1.22e-13,73;UBERON:0000955,3.44e-13,47;UBERON:0006238,3.44e-13,47;UBERON:0002616,4.30e-12,46;UBERON:0002020,1.44e-09,34;UBERON:0004733,3.65e-09,6;UBERON:0004732,3.65e-09,6;UBERON:0002028,3.65e-09,6;UBERON:0007277,3.65e-09,6;UBERON:0003080,4.53e-07,40;UBERON:0003528,8.43e-07,29;UBERON:0002791,8.43e-07,29;UBERON:0001893,8.43e-07,29 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,1.09012578190223,0.219686182734472,0.194429899074283,0.279972843250725,1.43752564364972,0,0,0,0,0.573066879877513,0.515672092277442,1.01158230429799,0.528990979272033,1.26766280701236,0,0,0,0,0,0.299600110518405,0.768436610643109,0.311068836925433,0.540023753326763,0,1.71390590642282,1.32521124570968,0.489963196859816,0.766763768145891,0.919218786610021,7.70811166995721,16.7270412891596,12.4421291937557,0.923204014111357,1.55528994124096,0.52091337055676,1.67509799400829,2.8138130501584,0.763991238884051,1.17851434189467,1.42371680799103,0.559198337475902,0,0.0755715601067855,0,0,0,0,0,0.448026887097336,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,1.63286352971307,0.693941307064543,1.82679286987285,1.38369298353635,1.05505848386836,0.940709657085638,0.376999773989026,0,0,0,0.161766849947409,0,0,0,1.46390398505774,2.51336048176146,0,0,0,0,2.24685959107234,4.57500602818627,1.88481528169297,2.9550134432687,2.30143911597297,19.9476522777178,15.7374025175725,0,0,0,0.631325567659422,0.520481771850815,0.229902104433473,0.360124259610698,0.452114453507145,1.02054748726992,0.896796041993948,0.937017245597288,1.55222022443409,1.72454394346274,1.32374256117473,1.05570674498369,0.657587197282725,0.278047249225598,1.39300866608867,0.205782136407943,0.199034266818493,0,0,0,0.414251545071004,1.40715635988658,0.540186184383045,0.710234206755631,1.37734962223183,0.308534225774757,0.930135779001631,0.536546802799238,0.116765342367169,0,0,0.0810688095458557,0.146199987425332,0.219550115291051,0,2.10289948564127,1.3377599609307,0,0,2.34617075588757,0.928946687441754,0.515469845288373,0.605050573870028,0.444756087689741,0.380451252225118,0,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.569003702859245,0.228497025219458,2.25415471346161,0.407302655690628,0.387904974335251,0.140271639780637,0.189709611372772,0,0.156998727841375,0,0,0,0.196558995113203,0.224862112384854,0,0,0,0.287696137450811,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0,0.947457058852424,0.488894929326078,0.339490171550376,0,0.335012514883631,0.476087281772027,0,0.315270288212382,0.44292937929755,0.637819074629948,0.327726629431476,0,0,0,0,0,0,2.0871576698413,2.57865710502847,0,0,1.57754109708128,0.780877488593277,3.23135096599198,2.15071918157297,1.55959071857676,2.54768877709949,0.404810701674894,0.876767573733936,2.37172666767914,4.17717711348349,0,0.35613120733451,0.325773918707152,0,0,1.21390318077491,0.604647113929502,0.188605079755898,0,0.307435147943927,0,0.363533729477506,0,0,0,0,0.340439605753788,0.18006109403131,0.517434735131018,0,0.354680467284547,0.356737635204141,0.493647061806363,0.608929898229199,0,0,0,0.16488625294148,0.161464426695906,0.120625849856312,0.238744688006273,0.164140899745061,0,3.33765543618917,0,0,0,0,0,0,0.169978429993855,0,0,0,1.10717597753397,0.406638934253697,0.108005340821801,0.418176592028937,0,0.269728692769641,0.495920734352016,0.26175594198403,0,0,0,0,0,0.194451188344048,0,0,0,0.13020438484395,0,0,0,0,0.405450430580328,0.308132871494482,0,0.358053391334963,0,0,0,0,0.0762068066549998,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,1.6942555278512,0.460325236507177,1.14579102687879,0.515559547031063,2.05524755931193,3.0215755895588,0.675022500231806,0.900642406448441,0.906284817968409,3.62432218226274,0.31136204275253,1.59609949360412,1.36586884603307,0.486213434136588,0.419226325255965,0.735374033800057,0,0.412070114477788,0.64183841918363,0.252697211763798,0.50695859978048,0.188626341386076,0.37456602987953,0.384150914429216,0.631790158511746,0.476293691283074,0.695305955669133,0,0.412085900803307,0.588795680537589,0.342869252385415,0.354951612318675,0,0.581385666529314,0.564656282491984,0,0.548783918618318,0,0.407412341537585,0.561142271657738,0.118635018124174,0.197008964751127,0.409231043169689,0.619747364743864,0.192906610981141,0.999242311751784,0.467863216890817,0.214871054048298,0.57386499620653,0.220591419119515,0 | |||
|short_description=p1@Grid2ip | |||
}} |
Latest revision as of 16:58, 25 September 2015
Short description: | p1@Grid2ip |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Grid2ip_5end |
Coexpression cluster: | MCL_coexpression_mm9:189 |
Association with transcript: | 0bp_to_ENSMUST00000010969, NM_133355, uc009ake.1_5end |
EntrezGene: | Grid2ip |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.53e-11 | 33 |
neuronal stem cell | 1.53e-11 | 33 |
neuroblast | 1.53e-11 | 33 |
electrically signaling cell | 1.53e-11 | 33 |
neural cell | 4.70e-11 | 43 |
ectodermal cell | 1.12e-10 | 44 |
neurectodermal cell | 1.12e-10 | 44 |
electrically responsive cell | 4.80e-09 | 39 |
electrically active cell | 4.80e-09 | 39 |
CNS neuron (sensu Vertebrata) | 2.37e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.37e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.58e-27 | 73 |
nervous system | 2.70e-26 | 75 |
ectoderm-derived structure | 8.20e-21 | 95 |
ectoderm | 8.20e-21 | 95 |
presumptive ectoderm | 8.20e-21 | 95 |
regional part of nervous system | 7.52e-19 | 54 |
neurectoderm | 9.52e-17 | 64 |
neural plate | 9.52e-17 | 64 |
presumptive neural plate | 9.52e-17 | 64 |
neural tube | 2.61e-16 | 52 |
neural rod | 2.61e-16 | 52 |
future spinal cord | 2.61e-16 | 52 |
neural keel | 2.61e-16 | 52 |
structure with developmental contribution from neural crest | 1.05e-14 | 92 |
posterior neural tube | 1.19e-13 | 12 |
chordal neural plate | 1.19e-13 | 12 |
ecto-epithelium | 1.22e-13 | 73 |
brain | 3.44e-13 | 47 |
future brain | 3.44e-13 | 47 |
regional part of brain | 4.30e-12 | 46 |
gray matter | 1.44e-09 | 34 |
segmental subdivision of hindbrain | 3.65e-09 | 6 |
segmental subdivision of nervous system | 3.65e-09 | 6 |
hindbrain | 3.65e-09 | 6 |
presumptive hindbrain | 3.65e-09 | 6 |
anterior neural tube | 4.53e-07 | 40 |
brain grey matter | 8.43e-07 | 29 |
regional part of telencephalon | 8.43e-07 | 29 |
telencephalon | 8.43e-07 | 29 |