FFCP PHASE1:Mm9::chr14:118636238..118636257,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=223227|HGNC=|MCL_coexpression_id=2092|UniProt=Q811W0|association_with_transcript=0bp_to_ENSMUST00000170662,NM_177753,uc007uyt.2_5end|description=CAGE_peak_2_at_Sox21_5end|id=chr14:118636238..118636257,-|ontology_enrichment_celltype=CL:0000117!2.85e-15!23;CL:0000337!2.85e-15!23;CL:0000221!2.16e-11!44;CL:0000133!2.16e-11!44;CL:0002319!8.51e-11!43;CL:0000055!7.88e-09!50;CL:0000540!3.37e-08!33;CL:0000047!3.37e-08!33;CL:0000031!3.37e-08!33;CL:0000404!3.37e-08!33;CL:0000393!8.28e-07!39;CL:0000211!8.28e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.26e-21,23;CL:0000337,5.26e-21,23;CL:0000221,3.54e-18,44;CL:0000133,3.54e-18,44;CL:0002319,2.77e-17,43;CL:0000540,2.30e-13,33;CL:0000047,2.30e-13,33;CL:0000031,2.30e-13,33;CL:0000404,2.30e-13,33;CL:0002321,4.51e-10,70;CL:0000393,4.81e-10,39;CL:0000211,4.81e-10,39;CL:0002609,1.24e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.12e-21!73;UBERON:0005743!3.12e-21!73;UBERON:0001049!1.44e-20!52;UBERON:0005068!1.44e-20!52;UBERON:0006241!1.44e-20!52;UBERON:0007135!1.44e-20!52;UBERON:0000073!2.08e-20!75;UBERON:0001016!2.08e-20!75;UBERON:0000955!1.56e-18!50;UBERON:0006238!1.56e-18!50;UBERON:0002020!2.13e-18!34;UBERON:0002616!3.57e-18!49;UBERON:0004121!5.91e-18!102;UBERON:0000924!5.91e-18!102;UBERON:0006601!5.91e-18!102;UBERON:0000033!1.42e-17!63;UBERON:0003080!1.11e-15!40;UBERON:0002780!3.67e-15!39;UBERON:0001890!3.67e-15!39;UBERON:0006240!3.67e-15!39;UBERON:0002791!4.02e-15!29;UBERON:0003528!4.02e-15!29;UBERON:0001893!4.02e-15!29;UBERON:0003056!9.07e-14!49;UBERON:0002346!9.74e-13!71;UBERON:0003075!9.74e-13!71;UBERON:0007284!9.74e-13!71;UBERON:0000956!5.07e-11!21;UBERON:0001869!5.07e-11!21;UBERON:0000203!5.07e-11!21;UBERON:0007811!1.67e-10!86;UBERON:0000153!5.02e-10!94;UBERON:0002619!1.41e-08!17;UBERON:0000064!9.10e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.69e-30,73;UBERON:0001016,1.17e-28,75;UBERON:0000073,2.54e-27,54;UBERON:0004121,3.51e-27,95;UBERON:0000924,3.51e-27,95;UBERON:0006601,3.51e-27,95;UBERON:0001049,4.91e-26,52;UBERON:0005068,4.91e-26,52;UBERON:0006241,4.91e-26,52;UBERON:0007135,4.91e-26,52;UBERON:0002020,3.59e-24,34;UBERON:0010371,7.77e-23,73;UBERON:0000955,1.41e-21,47;UBERON:0006238,1.41e-21,47;UBERON:0002616,4.41e-21,46;UBERON:0003528,1.45e-19,29;UBERON:0002791,1.45e-19,29;UBERON:0001893,1.45e-19,29;UBERON:0003080,7.05e-19,40;UBERON:0002346,2.40e-18,64;UBERON:0003075,2.40e-18,64;UBERON:0007284,2.40e-18,64;UBERON:0002780,3.66e-18,39;UBERON:0001890,3.66e-18,39;UBERON:0006240,3.66e-18,39;UBERON:0000956,8.72e-14,21;UBERON:0001869,8.72e-14,21;UBERON:0000203,8.72e-14,21;UBERON:0003056,2.23e-13,49;UBERON:0010314,8.43e-11,92;UBERON:0002619,2.19e-10,17;UBERON:0011216,9.32e-08,194;UBERON:0003076,1.07e-07,12;UBERON:0003057,1.07e-07,12;UBERON:0002420,5.50e-07,8;UBERON:0007245,5.50e-07,8;UBERON:0010009,5.50e-07,8;UBERON:0010011,5.50e-07,8;UBERON:0000454,5.50e-07,8;UBERON:0001954,7.42e-07,7;UBERON:0003022,7.42e-07,7;UBERON:0002421,7.42e-07,7;UBERON:0000349,7.42e-07,7;UBERON:0002600,7.42e-07,7|phase1_expression=4.32401887182944,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0.70219357896598,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0.45881856213434,0,0,0,0.190023419456374,0,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0.755380907853464,0.101376931219515,0.367093504323363,0,14.6076854774899,5.93152693383074,3.69416808241138,4.89952475688769,15.8127820801469,0,0,0,0,0,0,23.0640765379941,21.1596391708813,24.0855933332348,0.338844532069132,0,0,0,0,12.8828047522914,20.7477884873639,12.2353742524004,13.9056116481641,13.6711224878398,9.71213346972932,9.27647871996777,12.7390431183552,12.8432931164437,8.27296907949019,1.10115880999389,2.17068474744819,5.37622866396852,7.12185953743047,5.94669683415663,5.2091337055676,3.90856198601933,5.6276261003168,2.29197371665215,6.18720029494702,5.69486723196412,6.71038004971082,0.075726193333184,0,0,0,0,0,0,0,0.421333260395256,0,0,0,9.43650912503759,0,0,0,11.6905162146056,10.387754484479,11.62706223534,0.45673551887624,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,2.92780797011547,1.67557365450764,0,0,0,0,4.6435098215495,3.66000482254901,4.14659361972453,1.91206752211504,2.30143911597297,2.70124457927428,2.27137768294861,0,0.124406970610093,0,0.420883711772948,0.520481771850815,0.229902104433473,0.360124259610698,0.150704817835715,0.136072998302656,0,0.0937017245597288,0,0.431135985865684,0,0.351902248327898,0.43839146485515,0.278047249225598,0,0.823128545631774,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,2.10289948564127,3.91037527041281,0,0,0.213288250535234,0.232236671860439,0,0.201683524623343,0,0,0,0,0,0.198956472041151,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.37898282354097,0.977789858652155,0.509235257325564,0.234690248288502,0,0.476087281772027,0.195133647857799,0.630540576424764,0.44292937929755,0.318909537314974,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,2.72936002979246,1.05490517932983,0,0,0,0,0,0,0,0,0,0,0,1.92792789853084,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,3.24109969256358,4.78627129996192,1.92903331528433,0,0.178368817602071,0.329098041204242,0.608929898229199,0,0.21183207086382,0,5.27636009412736,6.62004149453213,6.09160541774374,8.11731939221328,6.89391778929257,0,1.66882771809459,0,0.206386867963223,0,0,0,0,0,0,0,3.81868247206045,2.53068794864908,5.89626454667861,5.29226170026826,8.15444354456428,6.98760203987768,5.39457385539283,5.20716771069616,9.16145796944104,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0.241584120826006,0,0.316011120628178,0,0.205421914329655,0.129920822977795,0,0,0,0.147689527174577,0.201932899896295,0,0.100826185136841,0.0974578807397524,0.192423683280659,0,1.81384306892169,11.3212836220773,23.95359971473,4.86865387455827,0,0,0,1.71494703263253,0,4.51801474093653,2.76195141904306,1.14579102687879,2.23409137046794,2.74033007908257,3.0215755895588,4.05013500139084,1.80128481289688,0.906284817968409,3.10656187051092,3.42498247027783,7.58147259461959,2.39027048055788,1.21553358534147,1.88651846365184,0.735374033800057,1.11123363900808,1.64828045791115,3.20919209591815,1.51618327058278,0.760437899670719,0.943131706930381,0.655490552289177,1.02440243847791,0.516919220600519,0.476293691283074,0.463537303779422,0.578727661391115,0.824171801606613,1.17759136107518,0.685738504770831,0,0.953744759789284,1.16277133305863,1.50575008664529,1.69229215783353,0.73171189149109,0.526139422875686,1.35804113845862,2.24456908663095,1.54225523561426,0.689531376628944,0.818462086339379,0.929621047115796,1.73615949883027,3.2475375131933,1.87145286756327,2.36358159453128,1.14772999241306,0.661774257358546,0|short_description=p2@Sox21}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=223227 | |||
|HGNC= | |||
|MCL_coexpression_id=2092 | |||
|TSSclassifier=NA | |||
|UniProt=Q811W0 | |||
|association_with_transcript=0bp_to_ENSMUST00000170662,NM_177753,uc007uyt.2_5end | |||
|cluster_id=chr14:118636238..118636257,- | |||
|description=CAGE_peak_2_at_Sox21_5end | |||
|id=chr14:118636238..118636257,- | |||
|ontology_enrichment_celltype=CL:0000117!2.85e-15!23;CL:0000337!2.85e-15!23;CL:0000221!2.16e-11!44;CL:0000133!2.16e-11!44;CL:0002319!8.51e-11!43;CL:0000055!7.88e-09!50;CL:0000540!3.37e-08!33;CL:0000047!3.37e-08!33;CL:0000031!3.37e-08!33;CL:0000404!3.37e-08!33;CL:0000393!8.28e-07!39;CL:0000211!8.28e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.26e-21,23;CL:0000337,5.26e-21,23;CL:0000221,3.54e-18,44;CL:0000133,3.54e-18,44;CL:0002319,2.77e-17,43;CL:0000540,2.30e-13,33;CL:0000047,2.30e-13,33;CL:0000031,2.30e-13,33;CL:0000404,2.30e-13,33;CL:0002321,4.51e-10,70;CL:0000393,4.81e-10,39;CL:0000211,4.81e-10,39;CL:0002609,1.24e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.12e-21!73;UBERON:0005743!3.12e-21!73;UBERON:0001049!1.44e-20!52;UBERON:0005068!1.44e-20!52;UBERON:0006241!1.44e-20!52;UBERON:0007135!1.44e-20!52;UBERON:0000073!2.08e-20!75;UBERON:0001016!2.08e-20!75;UBERON:0000955!1.56e-18!50;UBERON:0006238!1.56e-18!50;UBERON:0002020!2.13e-18!34;UBERON:0002616!3.57e-18!49;UBERON:0004121!5.91e-18!102;UBERON:0000924!5.91e-18!102;UBERON:0006601!5.91e-18!102;UBERON:0000033!1.42e-17!63;UBERON:0003080!1.11e-15!40;UBERON:0002780!3.67e-15!39;UBERON:0001890!3.67e-15!39;UBERON:0006240!3.67e-15!39;UBERON:0002791!4.02e-15!29;UBERON:0003528!4.02e-15!29;UBERON:0001893!4.02e-15!29;UBERON:0003056!9.07e-14!49;UBERON:0002346!9.74e-13!71;UBERON:0003075!9.74e-13!71;UBERON:0007284!9.74e-13!71;UBERON:0000956!5.07e-11!21;UBERON:0001869!5.07e-11!21;UBERON:0000203!5.07e-11!21;UBERON:0007811!1.67e-10!86;UBERON:0000153!5.02e-10!94;UBERON:0002619!1.41e-08!17;UBERON:0000064!9.10e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.69e-30,73;UBERON:0001016,1.17e-28,75;UBERON:0000073,2.54e-27,54;UBERON:0004121,3.51e-27,95;UBERON:0000924,3.51e-27,95;UBERON:0006601,3.51e-27,95;UBERON:0001049,4.91e-26,52;UBERON:0005068,4.91e-26,52;UBERON:0006241,4.91e-26,52;UBERON:0007135,4.91e-26,52;UBERON:0002020,3.59e-24,34;UBERON:0010371,7.77e-23,73;UBERON:0000955,1.41e-21,47;UBERON:0006238,1.41e-21,47;UBERON:0002616,4.41e-21,46;UBERON:0003528,1.45e-19,29;UBERON:0002791,1.45e-19,29;UBERON:0001893,1.45e-19,29;UBERON:0003080,7.05e-19,40;UBERON:0002346,2.40e-18,64;UBERON:0003075,2.40e-18,64;UBERON:0007284,2.40e-18,64;UBERON:0002780,3.66e-18,39;UBERON:0001890,3.66e-18,39;UBERON:0006240,3.66e-18,39;UBERON:0000956,8.72e-14,21;UBERON:0001869,8.72e-14,21;UBERON:0000203,8.72e-14,21;UBERON:0003056,2.23e-13,49;UBERON:0010314,8.43e-11,92;UBERON:0002619,2.19e-10,17;UBERON:0011216,9.32e-08,194;UBERON:0003076,1.07e-07,12;UBERON:0003057,1.07e-07,12;UBERON:0002420,5.50e-07,8;UBERON:0007245,5.50e-07,8;UBERON:0010009,5.50e-07,8;UBERON:0010011,5.50e-07,8;UBERON:0000454,5.50e-07,8;UBERON:0001954,7.42e-07,7;UBERON:0003022,7.42e-07,7;UBERON:0002421,7.42e-07,7;UBERON:0000349,7.42e-07,7;UBERON:0002600,7.42e-07,7 | |||
|phase1_expression=4.32401887182944,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0.70219357896598,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0.45881856213434,0,0,0,0.190023419456374,0,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0.755380907853464,0.101376931219515,0.367093504323363,0,14.6076854774899,5.93152693383074,3.69416808241138,4.89952475688769,15.8127820801469,0,0,0,0,0,0,23.0640765379941,21.1596391708813,24.0855933332348,0.338844532069132,0,0,0,0,12.8828047522914,20.7477884873639,12.2353742524004,13.9056116481641,13.6711224878398,9.71213346972932,9.27647871996777,12.7390431183552,12.8432931164437,8.27296907949019,1.10115880999389,2.17068474744819,5.37622866396852,7.12185953743047,5.94669683415663,5.2091337055676,3.90856198601933,5.6276261003168,2.29197371665215,6.18720029494702,5.69486723196412,6.71038004971082,0.075726193333184,0,0,0,0,0,0,0,0.421333260395256,0,0,0,9.43650912503759,0,0,0,11.6905162146056,10.387754484479,11.62706223534,0.45673551887624,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,2.92780797011547,1.67557365450764,0,0,0,0,4.6435098215495,3.66000482254901,4.14659361972453,1.91206752211504,2.30143911597297,2.70124457927428,2.27137768294861,0,0.124406970610093,0,0.420883711772948,0.520481771850815,0.229902104433473,0.360124259610698,0.150704817835715,0.136072998302656,0,0.0937017245597288,0,0.431135985865684,0,0.351902248327898,0.43839146485515,0.278047249225598,0,0.823128545631774,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,2.10289948564127,3.91037527041281,0,0,0.213288250535234,0.232236671860439,0,0.201683524623343,0,0,0,0,0,0.198956472041151,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.37898282354097,0.977789858652155,0.509235257325564,0.234690248288502,0,0.476087281772027,0.195133647857799,0.630540576424764,0.44292937929755,0.318909537314974,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,2.72936002979246,1.05490517932983,0,0,0,0,0,0,0,0,0,0,0,1.92792789853084,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,3.24109969256358,4.78627129996192,1.92903331528433,0,0.178368817602071,0.329098041204242,0.608929898229199,0,0.21183207086382,0,5.27636009412736,6.62004149453213,6.09160541774374,8.11731939221328,6.89391778929257,0,1.66882771809459,0,0.206386867963223,0,0,0,0,0,0,0,3.81868247206045,2.53068794864908,5.89626454667861,5.29226170026826,8.15444354456428,6.98760203987768,5.39457385539283,5.20716771069616,9.16145796944104,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0.241584120826006,0,0.316011120628178,0,0.205421914329655,0.129920822977795,0,0,0,0.147689527174577,0.201932899896295,0,0.100826185136841,0.0974578807397524,0.192423683280659,0,1.81384306892169,11.3212836220773,23.95359971473,4.86865387455827,0,0,0,1.71494703263253,0,4.51801474093653,2.76195141904306,1.14579102687879,2.23409137046794,2.74033007908257,3.0215755895588,4.05013500139084,1.80128481289688,0.906284817968409,3.10656187051092,3.42498247027783,7.58147259461959,2.39027048055788,1.21553358534147,1.88651846365184,0.735374033800057,1.11123363900808,1.64828045791115,3.20919209591815,1.51618327058278,0.760437899670719,0.943131706930381,0.655490552289177,1.02440243847791,0.516919220600519,0.476293691283074,0.463537303779422,0.578727661391115,0.824171801606613,1.17759136107518,0.685738504770831,0,0.953744759789284,1.16277133305863,1.50575008664529,1.69229215783353,0.73171189149109,0.526139422875686,1.35804113845862,2.24456908663095,1.54225523561426,0.689531376628944,0.818462086339379,0.929621047115796,1.73615949883027,3.2475375131933,1.87145286756327,2.36358159453128,1.14772999241306,0.661774257358546,0 | |||
|short_description=p2@Sox21 | |||
}} |
Latest revision as of 16:16, 25 September 2015
Short description: | p2@Sox21 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sox21_5end |
Coexpression cluster: | MCL_coexpression_mm9:2092 |
Association with transcript: | 0bp_to_ENSMUST00000170662, NM_177753, uc007uyt.2_5end |
EntrezGene: | Sox21 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.26e-21 | 23 |
neuroblast (sensu Vertebrata) | 5.26e-21 | 23 |
ectodermal cell | 3.54e-18 | 44 |
neurectodermal cell | 3.54e-18 | 44 |
neural cell | 2.77e-17 | 43 |
neuron | 2.30e-13 | 33 |
neuronal stem cell | 2.30e-13 | 33 |
neuroblast | 2.30e-13 | 33 |
electrically signaling cell | 2.30e-13 | 33 |
embryonic cell | 4.51e-10 | 70 |
electrically responsive cell | 4.81e-10 | 39 |
electrically active cell | 4.81e-10 | 39 |
neuron of cerebral cortex | 1.24e-07 | 6 |