FFCP PHASE1:Mm9::chr16:52453274..52453301,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11658 | |EntrezGene=11658 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2182 | |||
|TSSclassifier=NA | |||
|UniProt=Q3TTY3,Q54AJ5,Q61490,Q5MPX5 | |UniProt=Q3TTY3,Q54AJ5,Q61490,Q5MPX5 | ||
|association_with_transcript=-164bp_to_NM_009655,uc007zli.2,uc012agn.1_5end | |association_with_transcript=-164bp_to_NM_009655,uc007zli.2,uc012agn.1_5end | ||
|cluster_id=chr16:52453274..52453301,- | |||
|description=CAGE_peak_3_at_Alcam_5end | |description=CAGE_peak_3_at_Alcam_5end | ||
|id=chr16:52453274..52453301,- | |id=chr16:52453274..52453301,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005177!1.78e-11!85;UBERON:0009569!6.61e-11!66;UBERON:0005178!3.54e-10!17;UBERON:0005181!3.54e-10!17;UBERON:0002224!3.54e-10!17;UBERON:0000915!3.54e-10!17;UBERON:0008947!3.54e-10!17;UBERON:0003258!3.54e-10!17;UBERON:0002100!2.59e-09!98;UBERON:0002048!2.07e-08!14;UBERON:0000117!2.07e-08!14;UBERON:0000171!2.07e-08!14;UBERON:0000170!2.07e-08!14;UBERON:0005597!2.07e-08!14;UBERON:0000118!2.07e-08!14;UBERON:0000475!1.36e-07!200;UBERON:0005157!1.76e-07!27 | |ontology_enrichment_uberon=UBERON:0005177!1.78e-11!85;UBERON:0009569!6.61e-11!66;UBERON:0005178!3.54e-10!17;UBERON:0005181!3.54e-10!17;UBERON:0002224!3.54e-10!17;UBERON:0000915!3.54e-10!17;UBERON:0008947!3.54e-10!17;UBERON:0003258!3.54e-10!17;UBERON:0002100!2.59e-09!98;UBERON:0002048!2.07e-08!14;UBERON:0000117!2.07e-08!14;UBERON:0000171!2.07e-08!14;UBERON:0000170!2.07e-08!14;UBERON:0005597!2.07e-08!14;UBERON:0000118!2.07e-08!14;UBERON:0000475!1.36e-07!200;UBERON:0005157!1.76e-07!27 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,4.45e-11,79;UBERON:0009569,6.59e-11,66;UBERON:0005178,3.53e-10,17;UBERON:0005181,3.53e-10,17;UBERON:0002224,3.53e-10,17;UBERON:0000915,3.53e-10,17;UBERON:0008947,3.53e-10,17;UBERON:0003258,3.53e-10,17;UBERON:0002100,8.42e-09,90;UBERON:0002048,2.07e-08,14;UBERON:0000117,2.07e-08,14;UBERON:0000171,2.07e-08,14;UBERON:0000170,2.07e-08,14;UBERON:0005597,2.07e-08,14;UBERON:0000118,2.07e-08,14 | |||
|phase1_expression=5.44506080156299,3.48975407639361,4.54999239389536,10.8887116070459,20.5367249278002,6.04365378882803,6.07392865548367,5.4231795845462,10.13678799492,15.2141942109296,29.1070545983358,23.8518755396056,1.71200729931206,1.39872643870396,3.66420737997229,4.45445588257617,2.09868563438444,14.9844528545163,17.9619908023518,20.3707032863054,10.6304112688837,0.595745707205312,0,4.15980299262857,3.67054849707472,2.29692785646008,3.01533397311352,3.23206849028834,3.04037471130198,3.52842181663903,2.88249663851896,0,0,0,4.04392267651784,2.32728503501889,4.08338712524738,10.8818223991596,7.813353445238,5.75876118371178,31.1762688656438,24.589637458504,16.0218416500281,0.251793635951155,0.608261587317087,0.183546752161682,19.559783608701,0.218025156380447,0.439372365468944,0.777719596297134,24.7775966276892,0,26.3418691510646,2.90144856804538,1.34437519656986,4.88792928468299,6.5902691185914,17.0171790451556,6.47412674750713,10.5798195854407,6.97214543856797,14.2314703469035,26.6788438833342,6.29929802096979,6.92206453796882,6.3943210345149,8.98800331555214,5.37905627450176,17.6272340924412,10.3954572515402,17.2466468308133,7.9982275633065,7.28866185140325,6.61450315760752,2.39613677545591,2.75765635983006,23.1243350098716,12.1302971180928,10.4452442614246,4.48413378282659,4.02545631850602,6.25096044668112,15.355064945076,24.1987922313622,20.4749652020926,20.3293723976831,12.386336229522,13.047961207771,10.8288456466453,7.40601289046498,49.2769630792852,3.44169550792555,19.039197343817,7.01614149129162,7.14754059192436,2.68816132258401,2.52799956237153,0,0,0,20.8448261269487,0,2.54805239706646,0,40.0508425870746,30.4031838570118,37.408808931094,5.709193985953,14.2415836005944,18.2583831049734,24.9818870543236,28.9242204396534,30.2106301405437,33.9125941243401,42.3319345688537,10.5559936716927,7.66304399976559,4.77177877835708,6.19227386364912,1.94120219936891,1.32504911076236,0.969750506270444,5.59175283654366,7.31951992528868,6.70229461803056,4.59822699375465,6.11057134980193,5.99902730993408,4.44745794755726,20.0719456802462,18.7575247155637,6.65968066198181,19.9897968221118,23.2701066170601,18.90871205492,19.9556753573342,25.1543228710281,5.10068579501381,4.0435641349388,53.0313476833914,9.10843100738926,10.3455946995063,6.84236093260327,7.08312643827861,3.12967896096108,3.07472928683639,3.18585863503078,14.2286853906459,7.11374376678379,18.9106080167819,20.586281527182,13.5901354105096,20.8535436919198,4.87553033131033,11.1122353660289,29.457071489137,7.02213187313235,8.23513302767089,7.95657798307659,10.9776659443816,8.44293815931946,6.66229627405755,5.91861838963026,4.32881309844288,5.39934895105824,3.72054311600653,2.68273401399619,2.80236821681207,1.97471819896177,0.820837320395476,1.62137619091711,2.33919979880532,2.41505126820156,1.34206418760372,7.99101804543684,9.67303356365274,5.94753809370836,2.64450566663544,12.3707185310436,14.3986736553472,10.6959992897337,8.0673409849337,6.44896327150124,4.37518940058886,2.84717436926707,3.95277491337626,5.27803938480566,4.97391180102877,8.57841983324129,8.08937467788799,3.24207074812041,4.58024928485045,27.1225098362907,37.93050618643,39.4477074855781,37.0645416678472,35.4933051516755,32.9638353484497,16.3150265780584,5.60918562322488,5.33795674660674,6.04646103216823,10.3758419480502,15.0160595144485,11.0073037263394,6.74586337154561,8.11440485554012,7.71766911207734,12.9859184408524,15.8232875597946,7.94462611197673,6.86403532970204,12.9391385874619,13.0249331683976,19.3463357331028,16.1650481886152,9.68746033018326,11.5786445127208,65.5873825091447,21.6020209418353,13.5260930446881,21.7273709792241,18.7752198630802,25.460951131156,47.8467718180888,65.3697720323626,30.4235828124949,29.0118743439895,29.8180417389501,45.7178648056909,53.5323443784276,57.1363781396971,57.3006878969235,19.5806046174735,0,1.10374698521893,11.7201930691088,13.3621322715112,1.96721934452011,1.51482556322624,6.62567260774139,9.76096860741596,6.24727853425117,5.25731355495614,4.23317480756549,2.54768877709949,4.45291771842384,8.18316402151673,6.32460444714438,8.67567554338879,13.6262481799938,7.83488656135923,9.61033060186099,23.4257574621,9.2921596837974,17.4802058031587,17.5347663039556,16.0314317792513,10.335566250827,14.7568871013085,6.71913562237375,12.3601468022352,15.6858846489277,11.3773232856894,5.27093042874994,8.25084345985495,19.7454971337197,9.54323798365944,3.49268446213437,5.14408884075822,13.3005175231705,13.3776613201553,15.4676079365994,14.6143175575008,1.40803024838226,0.63549621259146,13.6727606794076,22.0947578941583,27.287488111608,36.1274420319654,35.5729585129347,34.3054480467178,5.24665505933731,12.6089205367147,8.88528580148834,67.694892691937,39.2612398023789,4.70921142511728,5.19438065339896,5.0331198105435,11.3885548095883,10.7762618289217,9.95039811391851,5.72802370809068,19.9291675956115,28.4647253977588,24.4092070257271,16.936151977172,17.4690050996942,13.3515702920973,17.1092653351445,8.63794608547298,2.85152941241944,6.21339313086926,1.12738587736838,27.0624948339602,19.6895603643946,24.6953009196941,17.4365761694937,11.6579726588637,12.0877955805127,6.11960608766566,7.65473214307689,4.83168241652012,2.88030006257865,7.90027801570446,5.87903124341476,6.47079030138412,7.14564526377873,6.62398773969681,7.9472541912506,7.3319224207181,4.28299628806274,4.84638959751109,3.81034033274999,3.83139503519994,4.58052039476836,3.94468550725351,5.14258369598903,7.9355634265324,1.33191572024439,0.358855426437903,0.503653849092235,6.18206700903009,22.8972620050442,39.5607508417293,12.4333659865858,13.0408747049194,10.7302850097243,9.20650473014354,8.59343270159095,13.0608418581203,16.4419804744954,15.8632718451837,20.2506750069542,11.7083512838297,10.8754178156209,12.4262474820437,7.68026372122907,20.3502685434526,11.7806187970353,10.6966955510049,9.01336599300324,8.27295788025063,6.88964856185007,7.62329711783909,7.06022261101994,12.3821633764261,10.3926512954998,11.5062068245506,10.2069243142172,10.1159740799693,7.3517400263185,10.9547548995107,9.27074607558844,9.64546102318525,14.835092428919,14.8670909335741,15.0862471049583,10.1161209510822,11.2065009275241,13.2265239135419,10.1638130848557,10.5768259864596,11.8903182367302,9.2074399003245,8.69146328613515,9.53941861818155,12.4566769030383,8.76689893142515,9.82154503607254,11.4653262477615,11.7673032698496,9.74261253957989,13.3341016813883,14.8261027293326,6.88637995447836,6.17655973534643,1.85494268496337 | |phase1_expression=5.44506080156299,3.48975407639361,4.54999239389536,10.8887116070459,20.5367249278002,6.04365378882803,6.07392865548367,5.4231795845462,10.13678799492,15.2141942109296,29.1070545983358,23.8518755396056,1.71200729931206,1.39872643870396,3.66420737997229,4.45445588257617,2.09868563438444,14.9844528545163,17.9619908023518,20.3707032863054,10.6304112688837,0.595745707205312,0,4.15980299262857,3.67054849707472,2.29692785646008,3.01533397311352,3.23206849028834,3.04037471130198,3.52842181663903,2.88249663851896,0,0,0,4.04392267651784,2.32728503501889,4.08338712524738,10.8818223991596,7.813353445238,5.75876118371178,31.1762688656438,24.589637458504,16.0218416500281,0.251793635951155,0.608261587317087,0.183546752161682,19.559783608701,0.218025156380447,0.439372365468944,0.777719596297134,24.7775966276892,0,26.3418691510646,2.90144856804538,1.34437519656986,4.88792928468299,6.5902691185914,17.0171790451556,6.47412674750713,10.5798195854407,6.97214543856797,14.2314703469035,26.6788438833342,6.29929802096979,6.92206453796882,6.3943210345149,8.98800331555214,5.37905627450176,17.6272340924412,10.3954572515402,17.2466468308133,7.9982275633065,7.28866185140325,6.61450315760752,2.39613677545591,2.75765635983006,23.1243350098716,12.1302971180928,10.4452442614246,4.48413378282659,4.02545631850602,6.25096044668112,15.355064945076,24.1987922313622,20.4749652020926,20.3293723976831,12.386336229522,13.047961207771,10.8288456466453,7.40601289046498,49.2769630792852,3.44169550792555,19.039197343817,7.01614149129162,7.14754059192436,2.68816132258401,2.52799956237153,0,0,0,20.8448261269487,0,2.54805239706646,0,40.0508425870746,30.4031838570118,37.408808931094,5.709193985953,14.2415836005944,18.2583831049734,24.9818870543236,28.9242204396534,30.2106301405437,33.9125941243401,42.3319345688537,10.5559936716927,7.66304399976559,4.77177877835708,6.19227386364912,1.94120219936891,1.32504911076236,0.969750506270444,5.59175283654366,7.31951992528868,6.70229461803056,4.59822699375465,6.11057134980193,5.99902730993408,4.44745794755726,20.0719456802462,18.7575247155637,6.65968066198181,19.9897968221118,23.2701066170601,18.90871205492,19.9556753573342,25.1543228710281,5.10068579501381,4.0435641349388,53.0313476833914,9.10843100738926,10.3455946995063,6.84236093260327,7.08312643827861,3.12967896096108,3.07472928683639,3.18585863503078,14.2286853906459,7.11374376678379,18.9106080167819,20.586281527182,13.5901354105096,20.8535436919198,4.87553033131033,11.1122353660289,29.457071489137,7.02213187313235,8.23513302767089,7.95657798307659,10.9776659443816,8.44293815931946,6.66229627405755,5.91861838963026,4.32881309844288,5.39934895105824,3.72054311600653,2.68273401399619,2.80236821681207,1.97471819896177,0.820837320395476,1.62137619091711,2.33919979880532,2.41505126820156,1.34206418760372,7.99101804543684,9.67303356365274,5.94753809370836,2.64450566663544,12.3707185310436,14.3986736553472,10.6959992897337,8.0673409849337,6.44896327150124,4.37518940058886,2.84717436926707,3.95277491337626,5.27803938480566,4.97391180102877,8.57841983324129,8.08937467788799,3.24207074812041,4.58024928485045,27.1225098362907,37.93050618643,39.4477074855781,37.0645416678472,35.4933051516755,32.9638353484497,16.3150265780584,5.60918562322488,5.33795674660674,6.04646103216823,10.3758419480502,15.0160595144485,11.0073037263394,6.74586337154561,8.11440485554012,7.71766911207734,12.9859184408524,15.8232875597946,7.94462611197673,6.86403532970204,12.9391385874619,13.0249331683976,19.3463357331028,16.1650481886152,9.68746033018326,11.5786445127208,65.5873825091447,21.6020209418353,13.5260930446881,21.7273709792241,18.7752198630802,25.460951131156,47.8467718180888,65.3697720323626,30.4235828124949,29.0118743439895,29.8180417389501,45.7178648056909,53.5323443784276,57.1363781396971,57.3006878969235,19.5806046174735,0,1.10374698521893,11.7201930691088,13.3621322715112,1.96721934452011,1.51482556322624,6.62567260774139,9.76096860741596,6.24727853425117,5.25731355495614,4.23317480756549,2.54768877709949,4.45291771842384,8.18316402151673,6.32460444714438,8.67567554338879,13.6262481799938,7.83488656135923,9.61033060186099,23.4257574621,9.2921596837974,17.4802058031587,17.5347663039556,16.0314317792513,10.335566250827,14.7568871013085,6.71913562237375,12.3601468022352,15.6858846489277,11.3773232856894,5.27093042874994,8.25084345985495,19.7454971337197,9.54323798365944,3.49268446213437,5.14408884075822,13.3005175231705,13.3776613201553,15.4676079365994,14.6143175575008,1.40803024838226,0.63549621259146,13.6727606794076,22.0947578941583,27.287488111608,36.1274420319654,35.5729585129347,34.3054480467178,5.24665505933731,12.6089205367147,8.88528580148834,67.694892691937,39.2612398023789,4.70921142511728,5.19438065339896,5.0331198105435,11.3885548095883,10.7762618289217,9.95039811391851,5.72802370809068,19.9291675956115,28.4647253977588,24.4092070257271,16.936151977172,17.4690050996942,13.3515702920973,17.1092653351445,8.63794608547298,2.85152941241944,6.21339313086926,1.12738587736838,27.0624948339602,19.6895603643946,24.6953009196941,17.4365761694937,11.6579726588637,12.0877955805127,6.11960608766566,7.65473214307689,4.83168241652012,2.88030006257865,7.90027801570446,5.87903124341476,6.47079030138412,7.14564526377873,6.62398773969681,7.9472541912506,7.3319224207181,4.28299628806274,4.84638959751109,3.81034033274999,3.83139503519994,4.58052039476836,3.94468550725351,5.14258369598903,7.9355634265324,1.33191572024439,0.358855426437903,0.503653849092235,6.18206700903009,22.8972620050442,39.5607508417293,12.4333659865858,13.0408747049194,10.7302850097243,9.20650473014354,8.59343270159095,13.0608418581203,16.4419804744954,15.8632718451837,20.2506750069542,11.7083512838297,10.8754178156209,12.4262474820437,7.68026372122907,20.3502685434526,11.7806187970353,10.6966955510049,9.01336599300324,8.27295788025063,6.88964856185007,7.62329711783909,7.06022261101994,12.3821633764261,10.3926512954998,11.5062068245506,10.2069243142172,10.1159740799693,7.3517400263185,10.9547548995107,9.27074607558844,9.64546102318525,14.835092428919,14.8670909335741,15.0862471049583,10.1161209510822,11.2065009275241,13.2265239135419,10.1638130848557,10.5768259864596,11.8903182367302,9.2074399003245,8.69146328613515,9.53941861818155,12.4566769030383,8.76689893142515,9.82154503607254,11.4653262477615,11.7673032698496,9.74261253957989,13.3341016813883,14.8261027293326,6.88637995447836,6.17655973534643,1.85494268496337 | ||
|short_description=p3@Alcam | |short_description=p3@Alcam | ||
}} | }} |
Latest revision as of 16:03, 25 September 2015
Short description: | p3@Alcam |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Alcam_5end |
Coexpression cluster: | MCL_coexpression_mm9:2182 |
Association with transcript: | -164bp_to_NM_009655, uc007zli.2, uc012agn.1_5end |
EntrezGene: | Alcam |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trunk region element | 4.45e-11 | 79 |
subdivision of trunk | 6.59e-11 | 66 |
thoracic cavity element | 3.53e-10 | 17 |
thoracic segment organ | 3.53e-10 | 17 |
thoracic cavity | 3.53e-10 | 17 |
thoracic segment of trunk | 3.53e-10 | 17 |
respiratory primordium | 3.53e-10 | 17 |
endoderm of foregut | 3.53e-10 | 17 |
trunk | 8.42e-09 | 90 |
lung | 2.07e-08 | 14 |
respiratory tube | 2.07e-08 | 14 |
respiration organ | 2.07e-08 | 14 |
pair of lungs | 2.07e-08 | 14 |
lung primordium | 2.07e-08 | 14 |
lung bud | 2.07e-08 | 14 |