FFCP PHASE1:Mm9::chr5:139231026..139231044,+: Difference between revisions
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{{FFCP|EntrezGene=80752|HGNC=|MCL_coexpression_id=38|UniProt=E0CY01,Q5MJS3|association_with_transcript=0bp_to_ENSMUST00000160645,NM_030565,uc009afv.2,uc012efn.1_5end|description=CAGE_peak_1_at_Fam20c_5end|id=chr5:139231026..139231044,+|ontology_enrichment_celltype=CL:0000055!1.03e-15!50;CL:0002321!1.50e-15!70;CL:0000220!1.50e-15!70;CL:0000221!7.63e-14!44;CL:0000133!7.63e-14!44;CL:0002319!8.16e-14!43;CL:0000393!2.81e-11!39;CL:0000211!2.81e-11!39;CL:0000540!5.38e-10!33;CL:0000047!5.38e-10!33;CL:0000031!5.38e-10!33;CL:0000404!5.38e-10!33;CL:0000117!7.31e-08!23;CL:0000337!7.31e-08!23|ontology_enrichment_celltype_v019_2=CL:0002321,1.87e-15,70;CL:0000221,7.33e-14,44;CL:0000133,7.33e-14,44;CL:0002319,7.83e-14,43;CL:0000393,2.72e-11,39;CL:0000211,2.72e-11,39;CL:0000540,5.23e-10,33;CL:0000047,5.23e-10,33;CL:0000031,5.23e-10,33;CL:0000404,5.23e-10,33;CL:0000117,7.16e-08,23;CL:0000337,7.16e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.06e-12!75;UBERON:0001016!1.06e-12!75;UBERON:0001017!4.24e-12!73;UBERON:0005743!4.24e-12!73;UBERON:0002365!5.13e-11!25;UBERON:0002330!5.13e-11!25;UBERON:0002107!4.69e-10!22;UBERON:0007499!4.69e-10!22;UBERON:0006925!4.69e-10!22;UBERON:0009497!4.69e-10!22;UBERON:0000015!4.69e-10!22;UBERON:0002423!4.69e-10!22;UBERON:0006235!4.69e-10!22;UBERON:0008835!4.69e-10!22;UBERON:0003894!4.69e-10!22;UBERON:0004161!4.69e-10!22;UBERON:0008836!4.69e-10!22;UBERON:0009854!1.70e-09!23;UBERON:0009856!1.70e-09!23;UBERON:0004121!1.81e-08!102;UBERON:0000924!1.81e-08!102;UBERON:0006601!1.81e-08!102;UBERON:0005256!3.26e-07!47|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.02e-12,75;UBERON:0001017,4.09e-12,73;UBERON:0002365,4.97e-11,25;UBERON:0002330,4.97e-11,25;UBERON:0002107,4.56e-10,22;UBERON:0007499,4.56e-10,22;UBERON:0006925,4.56e-10,22;UBERON:0009497,4.56e-10,22;UBERON:0000015,4.56e-10,22;UBERON:0002423,4.56e-10,22;UBERON:0006235,4.56e-10,22;UBERON:0008835,4.56e-10,22;UBERON:0003894,4.56e-10,22;UBERON:0004161,4.56e-10,22;UBERON:0008836,4.56e-10,22;UBERON:0003104,6.21e-10,61;UBERON:0009142,6.21e-10,61;UBERON:0009854,1.66e-09,23;UBERON:0009856,1.66e-09,23;UBERON:0004121,4.35e-09,95;UBERON:0000924,4.35e-09,95;UBERON:0006601,4.35e-09,95;UBERON:0005256,3.89e-07,45|phase1_expression=7.68714466103011,20.9385244583617,25.479957405814,0.90739263392049,0,13.0945832091274,10.2789561862031,0,0,0,0,0,0,0,0.333109761815663,0,0,0.157731082679119,0,0,17.4338744809693,0,0,12.1594241322989,11.2410547722913,17.8011908875656,19.8150518233174,12.4973314957816,0.570070258369122,0.504060259519861,3.10422714917427,0,0,0,4.04392267651784,0.997407872150954,4.90006455029686,7.53356935326434,3.1253413780952,3.14114246384279,1.17646297606203,2.04913645487534,0,16.1147927008739,20.7822709000005,12.4811791469943,17.2126095756569,18.0960879795771,19.7717564461025,8.55491555926847,23.6577052546863,20.125359011096,0,0,0,6.17422646486273,15.1862723167541,15.4701627683233,27.3127222160457,18.5146842745212,25.3532561402472,11.5207140903505,17.7858959222228,516.992387578164,611.11941206639,549.911608968281,252.562893167015,140.623899747689,9.64313394468842,9.72042755988173,8.41299845405528,27.1368435183613,24.7372765865807,17.0262210908786,11.9806838772795,18.3843757322004,19.82085857989,19.4084753889485,15.2070467923681,21.2336923245612,10.3381037270723,16.6692278578163,17.8677119360884,10.1297269805702,10.2374826010463,25.3380583507354,20.2167786734726,22.3679334990361,12.6462742866417,19.5730340676574,28.1168554040627,26.673140186423,61.8773913674053,46.9541776724901,44.1847963864415,52.4191457903883,19.9431076587088,3.91989741929533,3.11743205523443,2.82671659608272,9.57735254481427,6.41632387071589,45.8649431471962,14.2213340630666,4.76280290224671,4.30711771307668,1.01104889002957,17.9268691158924,5.17875767294343,7.27366481417641,4.51061849591953,3.65358573974569,4.84292544237723,4.06951129492081,3.29248379979973,6.1576629751541,54.3828929015623,15.0383331196708,7.96149496754887,16.5002186946357,17.2256384399107,16.0008833534623,3.72783522436244,6.14839673724249,11.9384622883669,2.29911349687732,2.51611761462433,1.19980546198682,3.55796635804581,12.4326230706003,8.6925114535539,21.7382029155255,3.47648640384553,4.09144731728529,18.90871205492,10.2211995732687,11.5078481150857,13.0627319140598,3.53811861807145,1.05220927943237,0.910843100738926,2.5289231487682,4.14142898552303,2.41127708537144,3.81004395247436,3.07472928683639,3.46696380870997,3.10444044886819,0.215567992932842,1.89106080167819,0.879755620819744,3.28793598641362,0.556094498451196,4.179025998266,2.46938563689532,2.58744546864041,2.1066395619397,2.31613116403244,6.25159698670304,1.24275463521301,0.703578179943289,0.720248245844059,2.60419209143731,1.96764231747404,1.85120535464854,1.62773761325285,4.56064782379353,1.40118410840603,1.6455984991348,2.13417703302824,2.83740833410495,3.65499968563331,4.39100230582101,4.83143107537338,3.57492912559016,11.0107935245834,2.31293148088659,1.32225283331772,1.9195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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=80752 | |||
|HGNC= | |||
|MCL_coexpression_id=38 | |||
|TSSclassifier=NA | |||
|UniProt=E0CY01,Q5MJS3 | |||
|association_with_transcript=0bp_to_ENSMUST00000160645,NM_030565,uc009afv.2,uc012efn.1_5end | |||
|cluster_id=chr5:139231026..139231044,+ | |||
|description=CAGE_peak_1_at_Fam20c_5end | |||
|id=chr5:139231026..139231044,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.03e-15!50;CL:0002321!1.50e-15!70;CL:0000220!1.50e-15!70;CL:0000221!7.63e-14!44;CL:0000133!7.63e-14!44;CL:0002319!8.16e-14!43;CL:0000393!2.81e-11!39;CL:0000211!2.81e-11!39;CL:0000540!5.38e-10!33;CL:0000047!5.38e-10!33;CL:0000031!5.38e-10!33;CL:0000404!5.38e-10!33;CL:0000117!7.31e-08!23;CL:0000337!7.31e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.87e-15,70;CL:0000221,7.33e-14,44;CL:0000133,7.33e-14,44;CL:0002319,7.83e-14,43;CL:0000393,2.72e-11,39;CL:0000211,2.72e-11,39;CL:0000540,5.23e-10,33;CL:0000047,5.23e-10,33;CL:0000031,5.23e-10,33;CL:0000404,5.23e-10,33;CL:0000117,7.16e-08,23;CL:0000337,7.16e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.06e-12!75;UBERON:0001016!1.06e-12!75;UBERON:0001017!4.24e-12!73;UBERON:0005743!4.24e-12!73;UBERON:0002365!5.13e-11!25;UBERON:0002330!5.13e-11!25;UBERON:0002107!4.69e-10!22;UBERON:0007499!4.69e-10!22;UBERON:0006925!4.69e-10!22;UBERON:0009497!4.69e-10!22;UBERON:0000015!4.69e-10!22;UBERON:0002423!4.69e-10!22;UBERON:0006235!4.69e-10!22;UBERON:0008835!4.69e-10!22;UBERON:0003894!4.69e-10!22;UBERON:0004161!4.69e-10!22;UBERON:0008836!4.69e-10!22;UBERON:0009854!1.70e-09!23;UBERON:0009856!1.70e-09!23;UBERON:0004121!1.81e-08!102;UBERON:0000924!1.81e-08!102;UBERON:0006601!1.81e-08!102;UBERON:0005256!3.26e-07!47 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.02e-12,75;UBERON:0001017,4.09e-12,73;UBERON:0002365,4.97e-11,25;UBERON:0002330,4.97e-11,25;UBERON:0002107,4.56e-10,22;UBERON:0007499,4.56e-10,22;UBERON:0006925,4.56e-10,22;UBERON:0009497,4.56e-10,22;UBERON:0000015,4.56e-10,22;UBERON:0002423,4.56e-10,22;UBERON:0006235,4.56e-10,22;UBERON:0008835,4.56e-10,22;UBERON:0003894,4.56e-10,22;UBERON:0004161,4.56e-10,22;UBERON:0008836,4.56e-10,22;UBERON:0003104,6.21e-10,61;UBERON:0009142,6.21e-10,61;UBERON:0009854,1.66e-09,23;UBERON:0009856,1.66e-09,23;UBERON:0004121,4.35e-09,95;UBERON:0000924,4.35e-09,95;UBERON:0006601,4.35e-09,95;UBERON:0005256,3.89e-07,45 | |||
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| |||
|short_description=p1@Fam20c | |||
}} |
Latest revision as of 15:33, 25 September 2015
Short description: | p1@Fam20c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fam20c_5end |
Coexpression cluster: | MCL_coexpression_mm9:38 |
Association with transcript: | 0bp_to_ENSMUST00000160645, NM_030565, uc009afv.2, uc012efn.1_5end |
EntrezGene: | Fam20c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.87e-15 | 70 |
ectodermal cell | 7.33e-14 | 44 |
neurectodermal cell | 7.33e-14 | 44 |
neural cell | 7.83e-14 | 43 |
electrically responsive cell | 2.72e-11 | 39 |
electrically active cell | 2.72e-11 | 39 |
neuron | 5.23e-10 | 33 |
neuronal stem cell | 5.23e-10 | 33 |
neuroblast | 5.23e-10 | 33 |
electrically signaling cell | 5.23e-10 | 33 |
CNS neuron (sensu Vertebrata) | 7.16e-08 | 23 |
neuroblast (sensu Vertebrata) | 7.16e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.02e-12 | 75 |
central nervous system | 4.09e-12 | 73 |
exocrine gland | 4.97e-11 | 25 |
exocrine system | 4.97e-11 | 25 |
liver | 4.56e-10 | 22 |
epithelial sac | 4.56e-10 | 22 |
digestive gland | 4.56e-10 | 22 |
epithelium of foregut-midgut junction | 4.56e-10 | 22 |
anatomical boundary | 4.56e-10 | 22 |
hepatobiliary system | 4.56e-10 | 22 |
foregut-midgut junction | 4.56e-10 | 22 |
hepatic diverticulum | 4.56e-10 | 22 |
liver primordium | 4.56e-10 | 22 |
septum transversum | 4.56e-10 | 22 |
liver bud | 4.56e-10 | 22 |
mesenchyme | 6.21e-10 | 61 |
entire embryonic mesenchyme | 6.21e-10 | 61 |
digestive tract diverticulum | 1.66e-09 | 23 |
sac | 1.66e-09 | 23 |
ectoderm-derived structure | 4.35e-09 | 95 |
ectoderm | 4.35e-09 | 95 |
presumptive ectoderm | 4.35e-09 | 95 |
trunk mesenchyme | 3.89e-07 | 45 |