FFCP PHASE1:Mm9::chr3:55046483..55046501,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13175 | |EntrezGene=13175 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=794 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BRN4 | |UniProt=Q8BRN4 | ||
|association_with_transcript=-26bp_to_ENSMUST00000107963_5end | |association_with_transcript=-26bp_to_ENSMUST00000107963_5end | ||
|cluster_id=chr3:55046483..55046501,+ | |||
|description=CAGE_peak_3_at_Dclk1_5end | |description=CAGE_peak_3_at_Dclk1_5end | ||
|id=chr3:55046483..55046501,+ | |id=chr3:55046483..55046501,+ | ||
|ontology_enrichment_celltype=CL:0000393!4.14e-18!39;CL:0000211!4.14e-18!39;CL:0000055!7.60e-18!50;CL:0000221!1.44e-16!44;CL:0000133!1.44e-16!44;CL:0002319!3.34e-16!43;CL:0000540!2.11e-15!33;CL:0000047!2.11e-15!33;CL:0000031!2.11e-15!33;CL:0000404!2.11e-15!33;CL:0002321!7.99e-13!70;CL:0000220!7.99e-13!70;CL:0000117!1.04e-12!23;CL:0000337!1.04e-12!23 | |ontology_enrichment_celltype=CL:0000393!4.14e-18!39;CL:0000211!4.14e-18!39;CL:0000055!7.60e-18!50;CL:0000221!1.44e-16!44;CL:0000133!1.44e-16!44;CL:0002319!3.34e-16!43;CL:0000540!2.11e-15!33;CL:0000047!2.11e-15!33;CL:0000031!2.11e-15!33;CL:0000404!2.11e-15!33;CL:0002321!7.99e-13!70;CL:0000220!7.99e-13!70;CL:0000117!1.04e-12!23;CL:0000337!1.04e-12!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.18e-18,39;CL:0000211,2.18e-18,39;CL:0000221,8.07e-17,44;CL:0000133,8.07e-17,44;CL:0002319,1.90e-16,43;CL:0000540,1.24e-15,33;CL:0000047,1.24e-15,33;CL:0000031,1.24e-15,33;CL:0000404,1.24e-15,33;CL:0002321,3.04e-13,70;CL:0000117,6.77e-13,23;CL:0000337,6.77e-13,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.32e-26!75;UBERON:0001016!1.32e-26!75;UBERON:0001017!2.93e-25!73;UBERON:0005743!2.93e-25!73;UBERON:0004121!2.55e-23!102;UBERON:0000924!2.55e-23!102;UBERON:0006601!2.55e-23!102;UBERON:0001049!1.04e-17!52;UBERON:0005068!1.04e-17!52;UBERON:0006241!1.04e-17!52;UBERON:0007135!1.04e-17!52;UBERON:0000033!1.48e-17!63;UBERON:0002020!2.26e-17!34;UBERON:0002346!6.09e-17!71;UBERON:0003075!6.09e-17!71;UBERON:0007284!6.09e-17!71;UBERON:0000955!1.94e-16!50;UBERON:0006238!1.94e-16!50;UBERON:0002616!6.34e-16!49;UBERON:0003056!1.41e-15!49;UBERON:0003080!9.04e-15!40;UBERON:0002791!1.36e-14!29;UBERON:0003528!1.36e-14!29;UBERON:0001893!1.36e-14!29;UBERON:0002780!1.57e-14!39;UBERON:0001890!1.57e-14!39;UBERON:0006240!1.57e-14!39;UBERON:0000956!5.55e-11!21;UBERON:0001869!5.55e-11!21;UBERON:0000203!5.55e-11!21;UBERON:0000153!1.44e-09!94;UBERON:0002619!4.83e-09!17;UBERON:0007811!1.48e-08!86;UBERON:0002021!3.17e-07!10;UBERON:0000411!3.17e-07!10;UBERON:0001950!3.17e-07!10 | |ontology_enrichment_uberon=UBERON:0000073!1.32e-26!75;UBERON:0001016!1.32e-26!75;UBERON:0001017!2.93e-25!73;UBERON:0005743!2.93e-25!73;UBERON:0004121!2.55e-23!102;UBERON:0000924!2.55e-23!102;UBERON:0006601!2.55e-23!102;UBERON:0001049!1.04e-17!52;UBERON:0005068!1.04e-17!52;UBERON:0006241!1.04e-17!52;UBERON:0007135!1.04e-17!52;UBERON:0000033!1.48e-17!63;UBERON:0002020!2.26e-17!34;UBERON:0002346!6.09e-17!71;UBERON:0003075!6.09e-17!71;UBERON:0007284!6.09e-17!71;UBERON:0000955!1.94e-16!50;UBERON:0006238!1.94e-16!50;UBERON:0002616!6.34e-16!49;UBERON:0003056!1.41e-15!49;UBERON:0003080!9.04e-15!40;UBERON:0002791!1.36e-14!29;UBERON:0003528!1.36e-14!29;UBERON:0001893!1.36e-14!29;UBERON:0002780!1.57e-14!39;UBERON:0001890!1.57e-14!39;UBERON:0006240!1.57e-14!39;UBERON:0000956!5.55e-11!21;UBERON:0001869!5.55e-11!21;UBERON:0000203!5.55e-11!21;UBERON:0000153!1.44e-09!94;UBERON:0002619!4.83e-09!17;UBERON:0007811!1.48e-08!86;UBERON:0002021!3.17e-07!10;UBERON:0000411!3.17e-07!10;UBERON:0001950!3.17e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.00e-27,75;UBERON:0004121,3.64e-26,95;UBERON:0000924,3.64e-26,95;UBERON:0006601,3.64e-26,95;UBERON:0001017,1.17e-25,73;UBERON:0002346,7.87e-20,64;UBERON:0003075,7.87e-20,64;UBERON:0007284,7.87e-20,64;UBERON:0010371,3.07e-19,73;UBERON:0000073,5.34e-19,54;UBERON:0001049,5.57e-18,52;UBERON:0005068,5.57e-18,52;UBERON:0006241,5.57e-18,52;UBERON:0007135,5.57e-18,52;UBERON:0002020,1.23e-17,34;UBERON:0003056,8.18e-16,49;UBERON:0000955,1.68e-15,47;UBERON:0006238,1.68e-15,47;UBERON:0003080,5.43e-15,40;UBERON:0002616,5.50e-15,46;UBERON:0003528,8.20e-15,29;UBERON:0002791,8.20e-15,29;UBERON:0001893,8.20e-15,29;UBERON:0002780,9.53e-15,39;UBERON:0001890,9.53e-15,39;UBERON:0006240,9.53e-15,39;UBERON:0010314,2.95e-14,92;UBERON:0000956,3.86e-11,21;UBERON:0001869,3.86e-11,21;UBERON:0000203,3.86e-11,21;UBERON:0002619,3.61e-09,17;UBERON:0002021,2.54e-07,10;UBERON:0000411,2.54e-07,10;UBERON:0001950,2.54e-07,10 | |||
|phase1_expression=12.9720566154883,0.348975407639361,0.454999239389536,0.30246421130683,0.500895729946347,51.3710572050383,23.127651418957,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69790044012167,0.496454756004426,0,4.63978026100879,7.57050627521661,1.14846392823004,5.59990595006797,4.52489588640367,0.190023419456374,0,0.886922042621219,0,0,0,10.3986583110459,4.98703936075477,7.9626048942324,0,0,0,0,0,0,58.7938139945946,57.1765892078062,103.520368219188,10.1710874765245,4.79655344036982,4.39372365468944,4.08302788055995,5.5994568650145,7.18762821824858,0.167782606057736,0,0,12.8629718017974,26.0745430344269,8.76642556871652,50.5791152148994,63.4789175126439,49.438849473482,6.09920157724438,4.4464739805557,2.2497492932035,1.97773272513395,0,8.68840320503374,12.6792040756113,34.2175720617976,37.3966449178783,36.1758933524377,32.2785612376298,31.8050698970323,38.0946385558507,42.7470800741334,50.5570332635512,15.4162233399144,21.1960981221412,20.5832754563366,54.0733779693795,68.7987079890121,61.4677777256977,12.0048689570594,24.1987922313622,28.1148775909331,51.2653738724182,50.3995750028824,45.295065335548,38.6203585999239,65.8228288530102,1.44932244350839,0,0,0,0,0,2.10666630197628,35.7903677413921,20.0035223544209,22.2603931941514,16.9012103732017,98.8113876090247,145.238986632788,92.4386714099331,0,0,0,1.1418387971906,23.5633474118926,0.445326417194474,3.99016251562112,3.95805121805784,2.53677046981664,1.20578112442098,2.58695155698551,0.753999547978053,0,1.3013942122792,0,11.3236794963186,1.32504911076236,1.93950101254089,3.72783522436244,4.09893115816166,5.86450779077674,1.78819938646014,0,0,0,13.9305294646485,10.980014467647,52.9004822395159,35.807809959609,41.1701886301832,13.5062228963714,20.766881672673,9.77657892963036,1.8661045591514,0.252722758433675,2.31486041475121,4.55421550369463,10.3455946995063,11.5239763075424,17.4817588689429,14.2876648217788,14.6049641124729,14.0552586839593,4.13925393182425,3.01795190105979,5.29497024469894,8.09375171154165,7.89104636739269,11.1218899690239,9.05455632957633,8.64284972913362,8.7575077400137,0,0,0,1.86413195281952,1.40715635988658,1.44049649168812,1.18372367792605,1.57411385397923,1.69693824176116,1.39520366850245,3.21928081679543,2.6856028744449,5.26591519723137,4.59668899421467,1.78351381000883,3.21639972335731,1.75640092232841,1.07365135008297,19.767255165028,48.2622632058844,6.27795687669216,1.05780226665418,2.77274725695804,1.16118335930219,2.83508414908605,1.81515172161008,0.667134131534611,1.71203063501303,2.84717436926707,1.4822905925161,1.50801125280162,0.994782360205754,2.33956904542944,3.59527763461689,2.16138049874694,3.78368419183298,1.51734320762465,4.11294645395024,4.50830942692322,4.2766778847516,4.07300223052014,4.55882829287071,5.75452487830741,0.885660887877613,0.627994911365499,0,0,0.333690211432188,0,0.224862112384854,0.405720242777006,0.482354319504834,0,0,0,0,1.43768206527355,0.372140947668503,0.624075346229121,0,0.358794827043824,0.964887042726734,2.77129785249907,2.4633883530163,1.95557971730431,1.35796068620151,1.64283173801951,1.17254380209271,1.90434912708811,1.17080188714679,2.36452716159286,1.7717175171902,2.23236676120482,1.14704320301017,1.89953480052485,2.74833211304872,0,0,1.96705709207614,2.48343071674259,9.47248480927973,9.25972324078405,5.08198330667694,2.01976741763498,12.9358369960665,11.3227235846025,17.0184484208911,28.9152245522588,31.6374117197,42.4614796183249,11.334699646897,11.9824901743638,15.4162233399144,35.9879874392424,2.41298144854057,8.01295216502649,10.5876523579824,5.77395430403874,0,0.242780636154981,1.51161778482376,0.565815239267694,0.295301892880773,2.45948118355142,2.84271122485043,1.81766864738753,3.92147116223193,2.21225730555071,1.05418608574999,5.15677716240934,8.17055053809091,7.56256594931503,4.39819524861365,3.85806663056866,8.33499098118686,12.1290795969408,11.6829804627506,2.13125464380219,0.469343416127421,0,0.661585194164886,5.27636009412736,3.71368181400583,4.52346936961169,3.10368094408155,3.11867709515616,2.62332752966866,12.0526446306831,2.05045056957423,2.88941615148511,2.03713980106683,2.63715839806567,2.46049609897845,5.94823250336959,0,0,0.138199973804424,0.954670618015114,1.10717597753397,2.23651413839534,2.16010681643603,2.09088296014469,0.87345025498471,2.29269388854195,2.47960367176008,4.18809507174447,2.46268449254406,3.10669656543463,0,2.99033092087958,1.32366792365678,1.16670713006429,1.16243841129958,0.844780627453891,1.17357238645754,3.77592716047455,0.209718688851422,0,0.576060012515731,0,2.02725215290164,1.1298205288131,0.51968329191118,0.716106782669926,0.39736270956253,0.480781798079875,1.47689527174577,0.504832249740738,0.457240839929999,0.604957110821043,0.584747284438515,0.962118416403295,0.818138315270983,2.26730383615211,0,0,0.167884616364078,1.73870634628971,6.00583921443782,4.94509385521616,2.57242054894879,1.00314420807073,71.7234840123675,63.0645574014832,56.7166558305003,72.3501897666925,43.1601987455505,56.6545423042275,44.5514850152992,38.727623477283,32.17311103787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|phase1_expression=12.9720566154883,0.348975407639361,0.454999239389536,0.30246421130683,0.500895729946347,51.3710572050383,23.127651418957,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69790044012167,0.496454756004426,0,4.63978026100879,7.57050627521661,1.14846392823004,5.59990595006797,4.52489588640367,0.190023419456374,0,0.886922042621219,0,0,0,10.3986583110459,4.98703936075477,7.9626048942324,0,0,0,0,0,0,58.7938139945946,57.1765892078062,103.520368219188,10.1710874765245,4.79655344036982,4.39372365468944,4.08302788055995,5.5994568650145,7.18762821824858,0.167782606057736,0,0,12.8629718017974,26.0745430344269,8.76642556871652,50.5791152148994,63.4789175126439,49.438849473482,6.09920157724438,4.4464739805557,2.2497492932035,1.97773272513395,0,8.68840320503374,12.6792040756113,34.2175720617976,37.3966449178783,36.1758933524377,32.2785612376298,31.8050698970323,38.0946385558507,42.7470800741334,50.5570332635512,15.4162233399144,21.1960981221412,20.5832754563366,54.0733779693795,68.7987079890121,61.4677777256977,12.0048689570594,24.1987922313622,28.1148775909331,51.2653738724182,50.3995750028824,45.295065335548,38.6203585999239,65.8228288530102,1.44932244350839,0,0,0,0,0,2.10666630197628,35.7903677413921,20.0035223544209,22.2603931941514,16.9012103732017,98.8113876090247,145.238986632788,92.4386714099331,0,0,0,1.1418387971906,23.5633474118926,0.445326417194474,3.99016251562112,3.95805121805784,2.53677046981664,1.20578112442098,2.58695155698551,0.753999547978053,0,1.3013942122792,0,11.3236794963186,1.32504911076236,1.93950101254089,3.72783522436244,4.09893115816166,5.86450779077674,1.78819938646014,0,0,0,13.9305294646485,10.980014467647,52.9004822395159,35.807809959609,41.1701886301832,13.5062228963714,20.766881672673,9.77657892963036,1.8661045591514,0.252722758433675,2.31486041475121,4.55421550369463,10.3455946995063,11.5239763075424,17.4817588689429,14.2876648217788,14.6049641124729,14.0552586839593,4.13925393182425,3.01795190105979,5.29497024469894,8.09375171154165,7.89104636739269,11.1218899690239,9.05455632957633,8.64284972913362,8.7575077400137,0,0,0,1.86413195281952,1.40715635988658,1.44049649168812,1.18372367792605,1.57411385397923,1.69693824176116,1.39520366850245,3.21928081679543,2.6856028744449,5.26591519723137,4.59668899421467,1.78351381000883,3.21639972335731,1.75640092232841,1.07365135008297,19.767255165028,48.2622632058844,6.27795687669216,1.05780226665418,2.77274725695804,1.16118335930219,2.83508414908605,1.81515172161008,0.667134131534611,1.71203063501303,2.84717436926707,1.4822905925161,1.50801125280162,0.994782360205754,2.33956904542944,3.59527763461689,2.16138049874694,3.78368419183298,1.51734320762465,4.11294645395024,4.50830942692322,4.2766778847516,4.07300223052014,4.55882829287071,5.75452487830741,0.885660887877613,0.627994911365499,0,0,0.333690211432188,0,0.224862112384854,0.405720242777006,0.482354319504834,0,0,0,0,1.43768206527355,0.372140947668503,0.624075346229121,0,0.358794827043824,0.964887042726734,2.77129785249907,2.4633883530163,1.95557971730431,1.35796068620151,1.64283173801951,1.17254380209271,1.90434912708811,1.17080188714679,2.36452716159286,1.7717175171902,2.23236676120482,1.14704320301017,1.89953480052485,2.74833211304872,0,0,1.96705709207614,2.48343071674259,9.47248480927973,9.25972324078405,5.08198330667694,2.01976741763498,12.9358369960665,11.3227235846025,17.0184484208911,28.9152245522588,31.6374117197,42.4614796183249,11.334699646897,11.9824901743638,15.4162233399144,35.9879874392424,2.41298144854057,8.01295216502649,10.5876523579824,5.77395430403874,0,0.242780636154981,1.51161778482376,0.565815239267694,0.295301892880773,2.45948118355142,2.84271122485043,1.81766864738753,3.92147116223193,2.21225730555071,1.05418608574999,5.15677716240934,8.17055053809091,7.56256594931503,4.39819524861365,3.85806663056866,8.33499098118686,12.1290795969408,11.6829804627506,2.13125464380219,0.469343416127421,0,0.661585194164886,5.27636009412736,3.71368181400583,4.52346936961169,3.10368094408155,3.11867709515616,2.62332752966866,12.0526446306831,2.05045056957423,2.88941615148511,2.03713980106683,2.63715839806567,2.46049609897845,5.94823250336959,0,0,0.138199973804424,0.954670618015114,1.10717597753397,2.23651413839534,2.16010681643603,2.09088296014469,0.87345025498471,2.29269388854195,2.47960367176008,4.18809507174447,2.46268449254406,3.10669656543463,0,2.99033092087958,1.32366792365678,1.16670713006429,1.16243841129958,0.844780627453891,1.17357238645754,3.77592716047455,0.209718688851422,0,0.576060012515731,0,2.02725215290164,1.1298205288131,0.51968329191118,0.716106782669926,0.39736270956253,0.480781798079875,1.47689527174577,0.504832249740738,0.457240839929999,0.604957110821043,0.584747284438515,0.962118416403295,0.818138315270983,2.26730383615211,0,0,0.167884616364078,1.73870634628971,6.00583921443782,4.94509385521616,2.57242054894879,1.00314420807073,71.7234840123675,63.0645574014832,56.7166558305003,72.3501897666925,43.1601987455505,56.6545423042275,44.5514850152992,38.727623477283,32.17311103787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| ||
|short_description=p3@Dclk1 | |short_description=p3@Dclk1 | ||
}} | }} |
Latest revision as of 14:32, 25 September 2015
Short description: | p3@Dclk1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dclk1_5end |
Coexpression cluster: | MCL_coexpression_mm9:794 |
Association with transcript: | -26bp_to_ENSMUST00000107963_5end |
EntrezGene: | Dclk1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.18e-18 | 39 |
electrically active cell | 2.18e-18 | 39 |
ectodermal cell | 8.07e-17 | 44 |
neurectodermal cell | 8.07e-17 | 44 |
neural cell | 1.90e-16 | 43 |
neuron | 1.24e-15 | 33 |
neuronal stem cell | 1.24e-15 | 33 |
neuroblast | 1.24e-15 | 33 |
electrically signaling cell | 1.24e-15 | 33 |
embryonic cell | 3.04e-13 | 70 |
CNS neuron (sensu Vertebrata) | 6.77e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.77e-13 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.00e-27 | 75 |
ectoderm-derived structure | 3.64e-26 | 95 |
ectoderm | 3.64e-26 | 95 |
presumptive ectoderm | 3.64e-26 | 95 |
central nervous system | 1.17e-25 | 73 |
neurectoderm | 7.87e-20 | 64 |
neural plate | 7.87e-20 | 64 |
presumptive neural plate | 7.87e-20 | 64 |
ecto-epithelium | 3.07e-19 | 73 |
regional part of nervous system | 5.34e-19 | 54 |
neural tube | 5.57e-18 | 52 |
neural rod | 5.57e-18 | 52 |
future spinal cord | 5.57e-18 | 52 |
neural keel | 5.57e-18 | 52 |
gray matter | 1.23e-17 | 34 |
pre-chordal neural plate | 8.18e-16 | 49 |
brain | 1.68e-15 | 47 |
future brain | 1.68e-15 | 47 |
anterior neural tube | 5.43e-15 | 40 |
regional part of brain | 5.50e-15 | 46 |
brain grey matter | 8.20e-15 | 29 |
regional part of telencephalon | 8.20e-15 | 29 |
telencephalon | 8.20e-15 | 29 |
regional part of forebrain | 9.53e-15 | 39 |
forebrain | 9.53e-15 | 39 |
future forebrain | 9.53e-15 | 39 |
structure with developmental contribution from neural crest | 2.95e-14 | 92 |
cerebral cortex | 3.86e-11 | 21 |
cerebral hemisphere | 3.86e-11 | 21 |
pallium | 3.86e-11 | 21 |
regional part of cerebral cortex | 3.61e-09 | 17 |
occipital lobe | 2.54e-07 | 10 |
visual cortex | 2.54e-07 | 10 |
neocortex | 2.54e-07 | 10 |