FFCP PHASE1:Mm9::chr8:4259173..4259185,-: Difference between revisions
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{{FFCP|EntrezGene=330695|HGNC=|MCL_coexpression_id=2|UniProt=Q8K129,Q3TYB7|association_with_transcript=88bp_to_ENSMUST00000053252,NM_183315,uc009ktp.2_5end|description=CAGE_peak_4_at_Ctxn1_5end|id=chr8:4259173..4259185,-|ontology_enrichment_celltype=CL:0000221!1.30e-13!44;CL:0000133!1.30e-13!44;CL:0002319!1.87e-13!43;CL:0000540!5.17e-12!33;CL:0000047!5.17e-12!33;CL:0000031!5.17e-12!33;CL:0000404!5.17e-12!33;CL:0000117!2.80e-11!23;CL:0000337!2.80e-11!23;CL:0000055!2.41e-10!50;CL:0000393!1.95e-09!39;CL:0000211!1.95e-09!39|ontology_enrichment_celltype_v019_2=CL:0000221,2.22e-14,44;CL:0000133,2.22e-14,44;CL:0002319,3.31e-14,43;CL:0000540,5.54e-13,33;CL:0000047,5.54e-13,33;CL:0000031,5.54e-13,33;CL:0000404,5.54e-13,33;CL:0000117,3.51e-12,23;CL:0000337,3.51e-12,23;CL:0000393,8.70e-10,39;CL:0000211,8.70e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.90e-26!73;UBERON:0005743!1.90e-26!73;UBERON:0000073!6.10e-26!75;UBERON:0001016!6.10e-26!75;UBERON:0004121!6.09e-22!102;UBERON:0000924!6.09e-22!102;UBERON:0006601!6.09e-22!102;UBERON:0003056!1.46e-21!49;UBERON:0002346!3.66e-21!71;UBERON:0003075!3.66e-21!71;UBERON:0007284!3.66e-21!71;UBERON:0001049!8.24e-21!52;UBERON:0005068!8.24e-21!52;UBERON:0006241!8.24e-21!52;UBERON:0007135!8.24e-21!52;UBERON:0000033!1.49e-20!63;UBERON:0000955!2.48e-20!50;UBERON:0006238!2.48e-20!50;UBERON:0003080!3.68e-20!40;UBERON:0002780!7.25e-20!39;UBERON:0001890!7.25e-20!39;UBERON:0006240!7.25e-20!39;UBERON:0002616!1.15e-19!49;UBERON:0002020!1.52e-19!34;UBERON:0002791!1.24e-17!29;UBERON:0003528!1.24e-17!29;UBERON:0001893!1.24e-17!29;UBERON:0000956!1.05e-13!21;UBERON:0001869!1.05e-13!21;UBERON:0000203!1.05e-13!21;UBERON:0002619!3.06e-11!17;UBERON:0000153!6.67e-10!94;UBERON:0007811!1.38e-09!86;UBERON:0002021!4.39e-08!10;UBERON:0000411!4.39e-08!10;UBERON:0001950!4.39e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.47e-29,73;UBERON:0001016,5.92e-28,75;UBERON:0002346,9.76e-25,64;UBERON:0003075,9.76e-25,64;UBERON:0007284,9.76e-25,64;UBERON:0000073,7.52e-24,54;UBERON:0004121,1.79e-23,95;UBERON:0000924,1.79e-23,95;UBERON:0006601,1.79e-23,95;UBERON:0003056,4.57e-23,49;UBERON:0001049,9.47e-23,52;UBERON:0005068,9.47e-23,52;UBERON:0006241,9.47e-23,52;UBERON:0007135,9.47e-23,52;UBERON:0003080,6.86e-22,40;UBERON:0002780,1.44e-21,39;UBERON:0001890,1.44e-21,39;UBERON:0006240,1.44e-21,39;UBERON:0000955,2.77e-21,47;UBERON:0006238,2.77e-21,47;UBERON:0002020,3.24e-21,34;UBERON:0002616,1.46e-20,46;UBERON:0010371,4.63e-20,73;UBERON:0003528,3.97e-19,29;UBERON:0002791,3.97e-19,29;UBERON:0001893,3.97e-19,29;UBERON:0000956,7.84e-15,21;UBERON:0001869,7.84e-15,21;UBERON:0000203,7.84e-15,21;UBERON:0010314,4.96e-14,92;UBERON:0002619,3.86e-12,17;UBERON:0002021,1.08e-08,10;UBERON:0000411,1.08e-08,10;UBERON:0001950,1.08e-08,10|phase1_expression=1.92178616525753,0,0.454999239389536,0,0,0,0,0,0,0.234064526321993,0,0,0.171200729931206,0,0,0,0,0,0,0,4.84746753861098,0.893618560807968,0.522399578277871,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,1.65192076945513,5.47673941043627,3.48840250208714,4.39372365468944,2.72201858703997,1.25987779462826,1.43752564364972,0.167782606057736,0,0.336093799142464,0.257259436035947,0.286533439938757,1.54701627683233,10.9250888864183,12.6957835025288,6.97214543856797,3.72728985276045,2.66788438833342,0.449949858640699,0.988866362566974,0,8.08920298399693,15.3687322128622,11.6132365785495,14.1756235248275,12.1988477583802,4.28476476605705,2.65042249141936,10.1667363348412,7.47594673942244,8.27296907949019,3.30347642998166,4.85211884723713,2.61131106535614,13.7161739239402,12.8997577479398,8.33461392890816,2.23346399201105,5.6276261003168,7.63991238884051,7.36571463684169,6.40672563595963,5.59198337475902,0.757261933331841,1.81371744256285,0,0,0,0,0,0,1.40444420131752,1.87473354835864,1.29893002301434,0,2.67602497575693,1.28326477414318,0,0,0.216491041011214,0.760079596425296,1.01104889002957,0.45673551887624,0,0.148442139064825,2.94925055502431,2.43572382649713,1.38369298353635,0.904335843315735,1.52865319276416,0.125666591329675,0.741584903203122,0.289198713839823,0,0.485300549842228,0.883366073841574,0,0,0,0.209446706813455,0.510914110417183,0.359445373517761,0,0,3.59497534571574,35.2275464170342,11.1832373380449,38.9366477230699,39.3801804288709,5.61027720310812,17.1975738851823,2.44414473240759,0.870848794270651,1.76905930903572,0.631325567659422,3.6433724029557,4.36813998423599,5.40186389416048,3.76762044589288,3.53789795586905,4.61209393025459,2.90475346135159,1.03481348295606,3.66465587985832,3.9712276835242,3.69497360744293,1.7535658594206,3.05851974148158,1.39300866608867,0.205782136407943,1.19420560091096,0,0,0,1.44988040774851,1.87620847984877,1.44049649168812,2.13070262026689,0.983821158737019,0.771335564436891,0.697601834251224,0.804820204198858,0.700592054203017,0.493679549740441,0.164167464079095,0.405344047729279,0,0,0,34.0669716673886,19.4489717396848,0,0,4.26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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=330695 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K129,Q3TYB7 | |||
|association_with_transcript=88bp_to_ENSMUST00000053252,NM_183315,uc009ktp.2_5end | |||
|cluster_id=chr8:4259173..4259185,- | |||
|description=CAGE_peak_4_at_Ctxn1_5end | |||
|id=chr8:4259173..4259185,- | |||
|ontology_enrichment_celltype=CL:0000221!1.30e-13!44;CL:0000133!1.30e-13!44;CL:0002319!1.87e-13!43;CL:0000540!5.17e-12!33;CL:0000047!5.17e-12!33;CL:0000031!5.17e-12!33;CL:0000404!5.17e-12!33;CL:0000117!2.80e-11!23;CL:0000337!2.80e-11!23;CL:0000055!2.41e-10!50;CL:0000393!1.95e-09!39;CL:0000211!1.95e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.22e-14,44;CL:0000133,2.22e-14,44;CL:0002319,3.31e-14,43;CL:0000540,5.54e-13,33;CL:0000047,5.54e-13,33;CL:0000031,5.54e-13,33;CL:0000404,5.54e-13,33;CL:0000117,3.51e-12,23;CL:0000337,3.51e-12,23;CL:0000393,8.70e-10,39;CL:0000211,8.70e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.90e-26!73;UBERON:0005743!1.90e-26!73;UBERON:0000073!6.10e-26!75;UBERON:0001016!6.10e-26!75;UBERON:0004121!6.09e-22!102;UBERON:0000924!6.09e-22!102;UBERON:0006601!6.09e-22!102;UBERON:0003056!1.46e-21!49;UBERON:0002346!3.66e-21!71;UBERON:0003075!3.66e-21!71;UBERON:0007284!3.66e-21!71;UBERON:0001049!8.24e-21!52;UBERON:0005068!8.24e-21!52;UBERON:0006241!8.24e-21!52;UBERON:0007135!8.24e-21!52;UBERON:0000033!1.49e-20!63;UBERON:0000955!2.48e-20!50;UBERON:0006238!2.48e-20!50;UBERON:0003080!3.68e-20!40;UBERON:0002780!7.25e-20!39;UBERON:0001890!7.25e-20!39;UBERON:0006240!7.25e-20!39;UBERON:0002616!1.15e-19!49;UBERON:0002020!1.52e-19!34;UBERON:0002791!1.24e-17!29;UBERON:0003528!1.24e-17!29;UBERON:0001893!1.24e-17!29;UBERON:0000956!1.05e-13!21;UBERON:0001869!1.05e-13!21;UBERON:0000203!1.05e-13!21;UBERON:0002619!3.06e-11!17;UBERON:0000153!6.67e-10!94;UBERON:0007811!1.38e-09!86;UBERON:0002021!4.39e-08!10;UBERON:0000411!4.39e-08!10;UBERON:0001950!4.39e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.47e-29,73;UBERON:0001016,5.92e-28,75;UBERON:0002346,9.76e-25,64;UBERON:0003075,9.76e-25,64;UBERON:0007284,9.76e-25,64;UBERON:0000073,7.52e-24,54;UBERON:0004121,1.79e-23,95;UBERON:0000924,1.79e-23,95;UBERON:0006601,1.79e-23,95;UBERON:0003056,4.57e-23,49;UBERON:0001049,9.47e-23,52;UBERON:0005068,9.47e-23,52;UBERON:0006241,9.47e-23,52;UBERON:0007135,9.47e-23,52;UBERON:0003080,6.86e-22,40;UBERON:0002780,1.44e-21,39;UBERON:0001890,1.44e-21,39;UBERON:0006240,1.44e-21,39;UBERON:0000955,2.77e-21,47;UBERON:0006238,2.77e-21,47;UBERON:0002020,3.24e-21,34;UBERON:0002616,1.46e-20,46;UBERON:0010371,4.63e-20,73;UBERON:0003528,3.97e-19,29;UBERON:0002791,3.97e-19,29;UBERON:0001893,3.97e-19,29;UBERON:0000956,7.84e-15,21;UBERON:0001869,7.84e-15,21;UBERON:0000203,7.84e-15,21;UBERON:0010314,4.96e-14,92;UBERON:0002619,3.86e-12,17;UBERON:0002021,1.08e-08,10;UBERON:0000411,1.08e-08,10;UBERON:0001950,1.08e-08,10 | |||
|phase1_expression=1.92178616525753,0,0.454999239389536,0,0,0,0,0,0,0.234064526321993,0,0,0.171200729931206,0,0,0,0,0,0,0,4.84746753861098,0.893618560807968,0.522399578277871,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,1.65192076945513,5.47673941043627,3.48840250208714,4.39372365468944,2.72201858703997,1.25987779462826,1.43752564364972,0.167782606057736,0,0.336093799142464,0.257259436035947,0.286533439938757,1.54701627683233,10.9250888864183,12.6957835025288,6.97214543856797,3.72728985276045,2.66788438833342,0.449949858640699,0.988866362566974,0,8.08920298399693,15.3687322128622,11.6132365785495,14.1756235248275,12.1988477583802,4.28476476605705,2.65042249141936,10.1667363348412,7.47594673942244,8.27296907949019,3.30347642998166,4.85211884723713,2.61131106535614,13.7161739239402,12.8997577479398,8.33461392890816,2.23346399201105,5.6276261003168,7.63991238884051,7.36571463684169,6.40672563595963,5.59198337475902,0.757261933331841,1.81371744256285,0,0,0,0,0,0,1.40444420131752,1.87473354835864,1.29893002301434,0,2.67602497575693,1.28326477414318,0,0,0.216491041011214,0.760079596425296,1.01104889002957,0.45673551887624,0,0.148442139064825,2.94925055502431,2.43572382649713,1.38369298353635,0.904335843315735,1.52865319276416,0.125666591329675,0.741584903203122,0.289198713839823,0,0.485300549842228,0.883366073841574,0,0,0,0.209446706813455,0.510914110417183,0.359445373517761,0,0,3.59497534571574,35.2275464170342,11.1832373380449,38.9366477230699,39.3801804288709,5.61027720310812,17.1975738851823,2.44414473240759,0.870848794270651,1.76905930903572,0.631325567659422,3.6433724029557,4.36813998423599,5.40186389416048,3.76762044589288,3.53789795586905,4.61209393025459,2.90475346135159,1.03481348295606,3.66465587985832,3.9712276835242,3.69497360744293,1.7535658594206,3.05851974148158,1.39300866608867,0.205782136407943,1.19420560091096,0,0,0,1.44988040774851,1.87620847984877,1.44049649168812,2.13070262026689,0.983821158737019,0.771335564436891,0.697601834251224,0.804820204198858,0.700592054203017,0.493679549740441,0.164167464079095,0.405344047729279,0,0,0,34.0669716673886,19.4489717396848,0,0,4.26576501070468,3.0190767341857,2.57734922644187,2.62188582010345,1.77902435075896,2.09248188723815,0,1.64698954724011,0.502670417600539,1.59165177632921,1.16978452271472,0,1.08069024937347,0.398282546508734,4.36236172192088,3.31320686568214,7.88954149711563,2.03651327845314,1.55161989734101,1.26244475802573,1.20149420536089,0.147610147979602,0.156998727841375,0,0,0.166845105716094,0.196558995113203,0.224862112384854,0.202860121388503,0.482354319504834,0,0,0.162135226775035,0.549122826376163,0,0.744281895337007,0,0,0,0,0.369506380333209,3.03186258832776,1.95557971730431,2.37643120085263,2.34690248288502,1.17254380209271,1.19021820443007,0.390267295715598,1.26108115284953,0.8858587585951,1.59454768657487,0.491589944147214,1.38147985492716,0.144649058581512,0,0,0,0,1.9266070798535,2.46144541843627,0.983609672260053,0,2.2085575359138,1.95219372148319,3.66219776145758,3.10659437338318,3.34198011123591,2.26461224631066,4.45291771842384,2.92255857911312,1.18586333383957,21.8498495166829,4.5420827266646,3.02711526234334,2.11753047159649,10.3931177472697,0,2.91336763385978,1.51161778482376,1.13163047853539,1.47650946440386,1.84461088766356,0.516856586336442,1.09060118843252,1.06949213515416,0.632073515871632,0,0,1.36175842301515,5.221771726908,6.98536892426874,4.28674070063185,2.30542303734956,2.31879462882692,4.11372551505302,2.13125464380219,1.17335854031855,0.63549621259146,0,0.65954501176592,1.45317984026315,0.72375509913787,0.716234064018819,0.492422699235184,0,1.8542530201051,0,2.27025554759545,1.11116716421827,0.188368457004691,0,0,0.849892149969277,0.279902904647316,0.552799895217695,4.77335309007557,3.47969592939249,3.04979200690273,2.70013352054503,2.50905955217362,5.8957892211468,4.5853877770839,4.87655388779482,2.09404753587224,0.777689839750757,0,2.25477175473676,2.54178128274764,2.64733584731356,1.94451188344048,1.42075805825504,1.01373675294467,1.29092962510329,1.0416350787516,0.524296722128554,0.241584120826006,0.864090018773596,0.948033361884535,2.02725215290164,0.513554785824136,0.77952493786677,0.716106782669926,0.596044064343795,0.480781798079875,0,0.201932899896295,0.15241361331,0.100826185136841,0.194915761479505,0.192423683280659,0,0.453460767230423,0.665957860122194,1.61484941897056,0.503653849092235,3.86379188064381,3.75364950902364,7.69236821922513,2.14368379079066,2.00628841614145,39.5326289831947,42.8102469951675,35.5195218332426,24.9187114398347,34.9392085083028,32.4819375877571,29.0259675099676,31.9728054289197,29.9073989929575,34.6899408873719,2.69847103718859,7.18244772121856,4.60980735536162,2.91728060481953,4.61148957781561,2.94149613520023,2.889207461421,2.88449080134452,4.1719497246936,2.77966932940177,3.54871019846336,3.39527414494937,2.34103768674706,3.64943368707755,3.79074095107048,0.952587382566147,2.54945517078682,2.12200142510076,2.47251540481984,2.20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| |||
|short_description=p4@Ctxn1 | |||
}} |
Latest revision as of 13:32, 25 September 2015
Short description: | p4@Ctxn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ctxn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 88bp_to_ENSMUST00000053252, NM_183315, uc009ktp.2_5end |
EntrezGene: | Ctxn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.22e-14 | 44 |
neurectodermal cell | 2.22e-14 | 44 |
neural cell | 3.31e-14 | 43 |
neuron | 5.54e-13 | 33 |
neuronal stem cell | 5.54e-13 | 33 |
neuroblast | 5.54e-13 | 33 |
electrically signaling cell | 5.54e-13 | 33 |
CNS neuron (sensu Vertebrata) | 3.51e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.51e-12 | 23 |
electrically responsive cell | 8.70e-10 | 39 |
electrically active cell | 8.70e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.47e-29 | 73 |
nervous system | 5.92e-28 | 75 |
neurectoderm | 9.76e-25 | 64 |
neural plate | 9.76e-25 | 64 |
presumptive neural plate | 9.76e-25 | 64 |
regional part of nervous system | 7.52e-24 | 54 |
ectoderm-derived structure | 1.79e-23 | 95 |
ectoderm | 1.79e-23 | 95 |
presumptive ectoderm | 1.79e-23 | 95 |
pre-chordal neural plate | 4.57e-23 | 49 |
neural tube | 9.47e-23 | 52 |
neural rod | 9.47e-23 | 52 |
future spinal cord | 9.47e-23 | 52 |
neural keel | 9.47e-23 | 52 |
anterior neural tube | 6.86e-22 | 40 |
regional part of forebrain | 1.44e-21 | 39 |
forebrain | 1.44e-21 | 39 |
future forebrain | 1.44e-21 | 39 |
brain | 2.77e-21 | 47 |
future brain | 2.77e-21 | 47 |
gray matter | 3.24e-21 | 34 |
regional part of brain | 1.46e-20 | 46 |
ecto-epithelium | 4.63e-20 | 73 |
brain grey matter | 3.97e-19 | 29 |
regional part of telencephalon | 3.97e-19 | 29 |
telencephalon | 3.97e-19 | 29 |
cerebral cortex | 7.84e-15 | 21 |
cerebral hemisphere | 7.84e-15 | 21 |
pallium | 7.84e-15 | 21 |
structure with developmental contribution from neural crest | 4.96e-14 | 92 |
regional part of cerebral cortex | 3.86e-12 | 17 |
occipital lobe | 1.08e-08 | 10 |
visual cortex | 1.08e-08 | 10 |
neocortex | 1.08e-08 | 10 |