FFCP PHASE1:Hg19::chr5:142780280..142780294,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:142780280..142780294,-
|short_description=p16@NR3C1
|description=CAGE_peak_16_at_NR3C1_5end
|association_with_transcript=109bp_to_AB307716,AB527290,EU44647...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2908 | |EntrezGene=2908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7978 | |HGNC=7978 | ||
|TSSclassifier=strong | |||
|UniProt=B6ZGU6,F5ATB7,F5ATB8,F1D8N4 | |UniProt=B6ZGU6,F5ATB7,F5ATB8,F1D8N4 | ||
|association_with_transcript=109bp_to_AB307716,AB527290,EU446477,HQ450643,HQ450644,HQ692822_5end | |||
|cluster_id=chr5:142780280..142780294,- | |||
|coexpression_cluster_id=C4472 | |||
|description=CAGE_peak_16_at_NR3C1_5end | |||
|id=chr5:142780280..142780294,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.25e-11;24!CL:0002568;1.90e-07;1!CL:0000817;4.08e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.09e-11,24;CL:0000826,1.09e-11,24;CL:0002568,1.85e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;1.58e-07;1!DOID:0050177;1.58e-07;1!DOID:0050427;1.58e-07;1!DOID:3571;4.08e-07;1!DOID:2355;4.08e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.54e-07,1;DOID:0050177,1.54e-07,1;DOID:0050427,1.54e-07,1;DOID:2355,4.34e-07,1;DOID:3571,5.19e-07,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;7.41e-10;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,6.10e-10,10;UBERON:0000358,6.10e-10,10;UBERON:0000307,6.10e-10,10;UBERON:0000091,6.10e-10,10;UBERON:0000087,6.10e-10,10;UBERON:0007010,6.10e-10,10;UBERON:0007806,6.10e-10,10;UBERON:0008780,6.10e-10,10;UBERON:0005728,6.10e-10,10 | |||
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| ||
|short_description=p16@NR3C1 | |||
}} | }} |
Latest revision as of 07:41, 25 September 2015
Short description: | p16@NR3C1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_NR3C1_5end |
Coexpression cluster: | C4472_renal_B_splenic_b_xeroderma_Mesenchymal_cord |
Association with transcript: | 109bp_to_AB307716, AB527290, EU446477, HQ450643, HQ450644, HQ692822_5end |
EntrezGene: | NR3C1 |
HGNC: | 7978 |
UniProt: | B6ZGU6F5ATB7F5ATB8F1D8N4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.09e-11 | 24 |
pro-B cell | 1.09e-11 | 24 |
mesenchymal stem cell of Wharton's jelly | 1.85e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 6.10e-10 | 10 |
blastocyst | 6.10e-10 | 10 |
blastula | 6.10e-10 | 10 |
bilaminar disc | 6.10e-10 | 10 |
inner cell mass | 6.10e-10 | 10 |
cleaving embryo | 6.10e-10 | 10 |
connecting stalk | 6.10e-10 | 10 |
inner cell mass derived epiblast | 6.10e-10 | 10 |
extraembryonic mesoderm | 6.10e-10 | 10 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.54e-07 | 1 |
monogenic disease | 1.54e-07 | 1 |
xeroderma pigmentosum | 1.54e-07 | 1 |
anemia | 4.34e-07 | 1 |
liver cancer | 5.19e-07 | 1 |