FFCP PHASE1:Hg19::chr9:130913939..130913973,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3934 | |EntrezGene=3934 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6526 | |HGNC=6526 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000494317_5end | |association_with_transcript=0bp_to_ENST00000494317_5end | ||
|cluster_id=chr9:130913939..130913973,+ | |||
|coexpression_cluster_id=C484 | |coexpression_cluster_id=C484 | ||
|description=CAGE_peak_3_at_LCN2_5end | |description=CAGE_peak_3_at_LCN2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002076!1.61e-13!43;CL:0000066!1.42e-11!254;CL:0000223!5.20e-10!59;CL:1000415!7.80e-07!2 | |ontology_enrichment_celltype=CL:0002076!1.61e-13!43;CL:0000066!1.42e-11!254;CL:0000223!5.20e-10!59;CL:1000415!7.80e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002231;6.58e-13;3!CL:0002178;9.94e-13;3!CL:1001319;3.10e-10;1!CL:1000600;3.10e-10;1!CL:0002076;2.93e-09;42!CL:0002251;3.14e-07;20 | |ontology_enrichment_celltype_v019=CL:0002231;6.58e-13;3!CL:0002178;9.94e-13;3!CL:1001319;3.10e-10;1!CL:1000600;3.10e-10;1!CL:0002076;2.93e-09;42!CL:0002251;3.14e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002231,6.98e-13,3;CL:0002178,9.38e-13,3;CL:0002076,2.17e-12,42;CL:1001319,2.84e-10,1;CL:1000600,2.84e-10,1;CL:0000223,1.10e-08,58;CL:0002251,3.04e-07,20;CL:0000066,4.43e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0006298;7.54e-10;1 | |ontology_enrichment_development_v019=UBERON:0006298;7.54e-10;1 | ||
|ontology_enrichment_disease=DOID:305!7.86e-13!106;DOID:299!8.43e-10!25;DOID:1749!1.69e-09!14;DOID:0050687!8.66e-08!143;DOID:3493!5.19e-07!2 | |ontology_enrichment_disease=DOID:305!7.86e-13!106;DOID:299!8.43e-10!25;DOID:1749!1.69e-09!14;DOID:0050687!8.66e-08!143;DOID:3493!5.19e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.08e-10;14!DOID:3111;7.54e-10;1!DOID:3603;7.54e-10;1!DOID:299;1.14e-08;25 | |ontology_enrichment_disease_v019=DOID:1749;3.08e-10;14!DOID:3111;7.54e-10;1!DOID:3603;7.54e-10;1!DOID:299;1.14e-08;25 | ||
|ontology_enrichment_disease_v019_2=DOID:305,9.36e-12,106;DOID:1749,3.40e-10,14;DOID:3111,9.82e-10,1;DOID:3603,9.82e-10,1;DOID:299,1.20e-08,25;DOID:0050687,3.86e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.75e-14!169;UBERON:0000925!3.75e-14!169;UBERON:0006595!3.75e-14!169;UBERON:0001007!3.85e-11!155;UBERON:0001555!3.85e-11!155;UBERON:0007026!3.85e-11!155;UBERON:0002294!2.05e-10!7;UBERON:0001173!2.05e-10!7;UBERON:0004912!2.05e-10!7;UBERON:0004921!9.82e-10!129;UBERON:0004185!9.82e-10!129;UBERON:0000077!1.09e-09!130;UBERON:0001723!1.31e-09!3;UBERON:0001033!1.31e-09!3;UBERON:0010056!1.31e-09!3;UBERON:0000161!1.89e-09!35;UBERON:0006562!6.81e-09!11;UBERON:0001004!4.52e-08!72;UBERON:0000166!1.40e-07!21;UBERON:0002394!2.85e-07!4;UBERON:0003928!2.85e-07!4;UBERON:0001041!2.97e-07!98;UBERON:0000065!5.62e-07!53;UBERON:0001042!7.85e-07!10;UBERON:0009145!7.85e-07!10 | |ontology_enrichment_uberon=UBERON:0004119!3.75e-14!169;UBERON:0000925!3.75e-14!169;UBERON:0006595!3.75e-14!169;UBERON:0001007!3.85e-11!155;UBERON:0001555!3.85e-11!155;UBERON:0007026!3.85e-11!155;UBERON:0002294!2.05e-10!7;UBERON:0001173!2.05e-10!7;UBERON:0004912!2.05e-10!7;UBERON:0004921!9.82e-10!129;UBERON:0004185!9.82e-10!129;UBERON:0000077!1.09e-09!130;UBERON:0001723!1.31e-09!3;UBERON:0001033!1.31e-09!3;UBERON:0010056!1.31e-09!3;UBERON:0000161!1.89e-09!35;UBERON:0006562!6.81e-09!11;UBERON:0001004!4.52e-08!72;UBERON:0000166!1.40e-07!21;UBERON:0002394!2.85e-07!4;UBERON:0003928!2.85e-07!4;UBERON:0001041!2.97e-07!98;UBERON:0000065!5.62e-07!53;UBERON:0001042!7.85e-07!10;UBERON:0009145!7.85e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0001723;2.67e-12;3!UBERON:0001033;2.67e-12;3!UBERON:0004645;3.10e-10;1!UBERON:0001256;3.10e-10;1!UBERON:0001259;3.10e-10;1!UBERON:0001736;7.54e-10;1!UBERON:0000945;5.49e-08;5!UBERON:0010039;5.49e-08;5 | |ontology_enrichment_uberon_v019=UBERON:0001723;2.67e-12;3!UBERON:0001033;2.67e-12;3!UBERON:0004645;3.10e-10;1!UBERON:0001256;3.10e-10;1!UBERON:0001259;3.10e-10;1!UBERON:0001736;7.54e-10;1!UBERON:0000945;5.49e-08;5!UBERON:0010039;5.49e-08;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,2.67e-12,3;UBERON:0001033,2.67e-12,3;UBERON:0010056,2.67e-12,3;UBERON:0000161,4.19e-11,36;UBERON:0004645,2.84e-10,1;UBERON:0001256,2.84e-10,1;UBERON:0001259,2.84e-10,1;UBERON:0001736,4.85e-10,1;UBERON:0006298,4.85e-10,1;UBERON:0004119,3.36e-08,160;UBERON:0000925,3.36e-08,160;UBERON:0006595,3.36e-08,160;UBERON:0001007,6.71e-08,145;UBERON:0001555,6.71e-08,145;UBERON:0007026,6.71e-08,145;UBERON:0006562,1.16e-07,11;UBERON:0004921,3.79e-07,118 | |||
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| ||
|short_description=p3@LCN2 | |short_description=p3@LCN2 | ||
}} | }} |
Latest revision as of 07:17, 25 September 2015
Short description: | p3@LCN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LCN2_5end |
Coexpression cluster: | C484_squamous_pharyngeal_bile_transitionalcell_Prostate_signet_trachea |
Association with transcript: | 0bp_to_ENST00000494317_5end |
EntrezGene: | LCN2 |
HGNC: | 6526 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of prostate | 6.98e-13 | 3 |
epithelial cell of stomach | 9.38e-13 | 3 |
endo-epithelial cell | 2.17e-12 | 42 |
bladder cell | 2.84e-10 | 1 |
lower urinary tract cell | 2.84e-10 | 1 |
endodermal cell | 1.10e-08 | 58 |
epithelial cell of alimentary canal | 3.04e-07 | 20 |
epithelial cell | 4.43e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
tongue | 2.67e-12 | 3 |
gustatory system | 2.67e-12 | 3 |
future tongue | 2.67e-12 | 3 |
orifice | 4.19e-11 | 36 |
urinary bladder urothelium | 2.84e-10 | 1 |
wall of urinary bladder | 2.84e-10 | 1 |
mucosa of urinary bladder | 2.84e-10 | 1 |
submandibular gland | 4.85e-10 | 1 |
submandibular gland primordium | 4.85e-10 | 1 |
endoderm-derived structure | 3.36e-08 | 160 |
endoderm | 3.36e-08 | 160 |
presumptive endoderm | 3.36e-08 | 160 |
digestive system | 6.71e-08 | 145 |
digestive tract | 6.71e-08 | 145 |
primitive gut | 6.71e-08 | 145 |
pharynx | 1.16e-07 | 11 |
subdivision of digestive tract | 3.79e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.36e-12 | 106 |
squamous cell carcinoma | 3.40e-10 | 14 |
cystadenocarcinoma | 9.82e-10 | 1 |
mucinous cystadenocarcinoma | 9.82e-10 | 1 |
adenocarcinoma | 1.20e-08 | 25 |
cell type cancer | 3.86e-08 | 143 |