FFCP PHASE1:Hg19::chr4:139937032..139937054,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:139937032..139937054,+
|short_description=p2@CCRN4L
|description=CAGE_peak_2_at_CCRN4L_5end
|association_with_transcript=89bp_to_ENST00000280614,NM_012118,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25819 | |EntrezGene=25819 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14254 | |HGNC=14254 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UK39,Q8WTX0 | |UniProt=Q9UK39,Q8WTX0 | ||
|association_with_transcript=89bp_to_ENST00000280614,NM_012118,uc003ihk.1,uc003ihl.2_5end | |||
|cluster_id=chr4:139937032..139937054,+ | |||
|coexpression_cluster_id=C2759 | |||
|description=CAGE_peak_2_at_CCRN4L_5end | |||
|id=chr4:139937032..139937054,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.50e-20!42;CL:0000738!1.82e-19!140;CL:0000860!5.09e-18!45;CL:0000012!2.31e-16!682;CL:0000766!5.07e-16!76;CL:0000548!1.65e-15!679;CL:0000004!1.65e-15!679;CL:0000255!1.65e-15!679;CL:0000144!2.14e-14!625;CL:0000557!1.61e-13!71;CL:0000063!2.66e-13!578;CL:0002087!3.50e-13!119;CL:0000037!4.82e-13!172;CL:0000566!4.82e-13!172;CL:0002371!4.89e-13!591;CL:0000988!6.19e-13!182;CL:0002031!8.47e-13!124;CL:0002009!2.59e-12!65;CL:0002032!5.23e-12!165;CL:0000837!5.23e-12!165;CL:0002194!2.45e-11!63;CL:0000576!2.45e-11!63;CL:0000040!2.45e-11!63;CL:0000559!2.45e-11!63;CL:0000839!3.41e-11!70;CL:0000763!3.30e-10!112;CL:0000049!3.30e-10!112;CL:0000003!1.31e-09!722;CL:0000034!9.62e-08!444;CL:0000723!4.59e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.75e-17;33!CL:0002057;4.75e-17;33!CL:0000576;2.48e-11;48!CL:0000473;5.93e-11;39!CL:0000234;5.93e-11;39!CL:0000766;7.00e-10;69!CL:0002087;3.71e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.28e-25,136;CL:0000860,9.24e-23,42;CL:0002057,9.24e-23,42;CL:0000766,4.32e-20,72;CL:0000473,4.40e-18,48;CL:0000234,4.40e-18,48;CL:0002087,5.89e-18,115;CL:0002031,1.04e-17,120;CL:0000037,2.20e-17,168;CL:0000988,3.51e-17,177;CL:0000557,4.07e-17,67;CL:0002032,5.94e-16,161;CL:0000837,5.94e-16,161;CL:0002009,6.30e-16,61;CL:0000839,8.85e-15,66;CL:0002194,9.53e-15,59;CL:0000576,9.53e-15,59;CL:0000040,9.53e-15,59;CL:0000559,9.53e-15,59;CL:0000763,1.16e-12,108;CL:0000049,1.16e-12,108;CL:0000034,8.08e-10,441;CL:0000723,4.93e-09,433;CL:0000048,1.28e-08,427 | |||
|ontology_enrichment_development_v019=CL:0002057;6.75e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.01e-11!80;UBERON:0001474!3.88e-10!86;UBERON:0002193!2.21e-09!112;UBERON:0002405!1.63e-08!115;UBERON:0002390!3.29e-08!102;UBERON:0003061!3.29e-08!102;UBERON:0003081!3.49e-08!216;UBERON:0004765!4.84e-08!101;UBERON:0001434!4.84e-08!101;UBERON:0002204!1.48e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.60e-14,76;UBERON:0002405,2.11e-13,93;UBERON:0002193,1.92e-12,108;UBERON:0001474,2.08e-12,82;UBERON:0002390,2.73e-11,98;UBERON:0003061,2.73e-11,98;UBERON:0004765,5.31e-11,90;UBERON:0003081,4.34e-09,203;UBERON:0001434,2.42e-08,100;UBERON:0002204,9.93e-07,167 | |||
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| ||
|short_description=p2@CCRN4L | |||
}} | }} |
Latest revision as of 06:32, 25 September 2015
Short description: | p2@CCRN4L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCRN4L_5end |
Coexpression cluster: | C2759_CD14_CD8_immature_Natural_CD34_CD19_Peripheral |
Association with transcript: | 89bp_to_ENST00000280614, NM_012118, uc003ihk.1, uc003ihl.2_5end |
EntrezGene: | CCRN4L |
HGNC: | 14254 |
UniProt: | Q9UK39Q8WTX0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.28e-25 | 136 |
classical monocyte | 9.24e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.24e-23 | 42 |
myeloid leukocyte | 4.32e-20 | 72 |
defensive cell | 4.40e-18 | 48 |
phagocyte | 4.40e-18 | 48 |
nongranular leukocyte | 5.89e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 1.04e-17 | 120 |
hematopoietic stem cell | 2.20e-17 | 168 |
hematopoietic cell | 3.51e-17 | 177 |
granulocyte monocyte progenitor cell | 4.07e-17 | 67 |
hematopoietic oligopotent progenitor cell | 5.94e-16 | 161 |
hematopoietic multipotent progenitor cell | 5.94e-16 | 161 |
macrophage dendritic cell progenitor | 6.30e-16 | 61 |
myeloid lineage restricted progenitor cell | 8.85e-15 | 66 |
monopoietic cell | 9.53e-15 | 59 |
monocyte | 9.53e-15 | 59 |
monoblast | 9.53e-15 | 59 |
promonocyte | 9.53e-15 | 59 |
myeloid cell | 1.16e-12 | 108 |
common myeloid progenitor | 1.16e-12 | 108 |
stem cell | 8.08e-10 | 441 |
somatic stem cell | 4.93e-09 | 433 |
multi fate stem cell | 1.28e-08 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.60e-14 | 76 |
immune system | 2.11e-13 | 93 |
hemolymphoid system | 1.92e-12 | 108 |
bone element | 2.08e-12 | 82 |
hematopoietic system | 2.73e-11 | 98 |
blood island | 2.73e-11 | 98 |
skeletal element | 5.31e-11 | 90 |
lateral plate mesoderm | 4.34e-09 | 203 |
skeletal system | 2.42e-08 | 100 |
musculoskeletal system | 9.93e-07 | 167 |