FFCP PHASE1:Hg19::chr22:46972975..46973087,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23151 | |EntrezGene=23151 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29113 | |HGNC=29113 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000431155_5end | |association_with_transcript=0bp_to_ENST00000431155_5end | ||
|cluster_id=chr22:46972975..46973087,+ | |||
|description=CAGE_peak_1_at_GRAMD4_5end | |description=CAGE_peak_1_at_GRAMD4_5end | ||
|id=chr22:46972975..46973087,+ | |id=chr22:46972975..46973087,+ | ||
|ontology_enrichment_celltype=CL:0000763!2.37e-15!112;CL:0000049!2.37e-15!112;CL:0000557!2.72e-12!71;CL:0002009!7.65e-11!65;CL:0002194!4.45e-10!63;CL:0000576!4.45e-10!63;CL:0000040!4.45e-10!63;CL:0000559!4.45e-10!63;CL:0000839!1.17e-09!70;CL:0000037!1.38e-09!172;CL:0000566!1.38e-09!172;CL:0000766!1.50e-09!76;CL:0000988!2.55e-08!182;CL:0002032!3.47e-08!165;CL:0000837!3.47e-08!165;CL:0002057!1.63e-07!42 | |ontology_enrichment_celltype=CL:0000763!2.37e-15!112;CL:0000049!2.37e-15!112;CL:0000557!2.72e-12!71;CL:0002009!7.65e-11!65;CL:0002194!4.45e-10!63;CL:0000576!4.45e-10!63;CL:0000040!4.45e-10!63;CL:0000559!4.45e-10!63;CL:0000839!1.17e-09!70;CL:0000037!1.38e-09!172;CL:0000566!1.38e-09!172;CL:0000766!1.50e-09!76;CL:0000988!2.55e-08!182;CL:0002032!3.47e-08!165;CL:0000837!3.47e-08!165;CL:0002057!1.63e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.00e-08;39!CL:0000234;2.00e-08;39!CL:0000860;2.72e-07;33!CL:0002057;2.72e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,2.50e-17,108;CL:0000049,2.50e-17,108;CL:0000557,1.39e-14,67;CL:0002009,4.48e-13,61;CL:0002194,3.03e-12,59;CL:0000576,3.03e-12,59;CL:0000040,3.03e-12,59;CL:0000559,3.03e-12,59;CL:0000839,1.29e-11,66;CL:0000766,2.17e-11,72;CL:0000037,1.02e-10,168;CL:0000473,5.39e-10,48;CL:0000234,5.39e-10,48;CL:0000988,2.77e-09,177;CL:0002032,3.12e-09,161;CL:0000837,3.12e-09,161;CL:0000860,1.63e-07,42;CL:0002057,1.63e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!4.94e-08!31;DOID:1240!5.79e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.25e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,4.94e-08,31;DOID:1240,5.79e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.46e-17!115;UBERON:0001049!1.08e-12!57;UBERON:0005068!1.08e-12!57;UBERON:0006241!1.08e-12!57;UBERON:0007135!1.08e-12!57;UBERON:0002346!1.17e-11!90;UBERON:0003075!2.30e-11!86;UBERON:0007284!2.30e-11!86;UBERON:0005743!7.02e-11!86;UBERON:0001474!1.29e-10!86;UBERON:0002619!2.65e-10!22;UBERON:0003080!2.67e-10!42;UBERON:0002371!2.86e-10!80;UBERON:0001893!2.92e-10!34;UBERON:0000073!3.01e-10!94;UBERON:0001016!3.01e-10!94;UBERON:0001869!3.14e-10!32;UBERON:0002020!3.43e-10!34;UBERON:0003528!3.43e-10!34;UBERON:0002780!3.57e-10!41;UBERON:0001890!3.57e-10!41;UBERON:0006240!3.57e-10!41;UBERON:0002791!6.74e-10!33;UBERON:0001017!1.14e-09!82;UBERON:0000956!1.23e-09!25;UBERON:0000203!1.23e-09!25;UBERON:0001950!1.39e-09!20;UBERON:0002616!6.36e-09!59;UBERON:0000955!1.04e-08!69;UBERON:0006238!1.04e-08!69;UBERON:0002390!1.39e-08!102;UBERON:0003061!1.39e-08!102;UBERON:0003056!1.76e-08!61;UBERON:0002405!3.07e-08!115;UBERON:0002193!2.10e-07!112 | |ontology_enrichment_uberon=UBERON:0007023!6.46e-17!115;UBERON:0001049!1.08e-12!57;UBERON:0005068!1.08e-12!57;UBERON:0006241!1.08e-12!57;UBERON:0007135!1.08e-12!57;UBERON:0002346!1.17e-11!90;UBERON:0003075!2.30e-11!86;UBERON:0007284!2.30e-11!86;UBERON:0005743!7.02e-11!86;UBERON:0001474!1.29e-10!86;UBERON:0002619!2.65e-10!22;UBERON:0003080!2.67e-10!42;UBERON:0002371!2.86e-10!80;UBERON:0001893!2.92e-10!34;UBERON:0000073!3.01e-10!94;UBERON:0001016!3.01e-10!94;UBERON:0001869!3.14e-10!32;UBERON:0002020!3.43e-10!34;UBERON:0003528!3.43e-10!34;UBERON:0002780!3.57e-10!41;UBERON:0001890!3.57e-10!41;UBERON:0006240!3.57e-10!41;UBERON:0002791!6.74e-10!33;UBERON:0001017!1.14e-09!82;UBERON:0000956!1.23e-09!25;UBERON:0000203!1.23e-09!25;UBERON:0001950!1.39e-09!20;UBERON:0002616!6.36e-09!59;UBERON:0000955!1.04e-08!69;UBERON:0006238!1.04e-08!69;UBERON:0002390!1.39e-08!102;UBERON:0003061!1.39e-08!102;UBERON:0003056!1.76e-08!61;UBERON:0002405!3.07e-08!115;UBERON:0002193!2.10e-07!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.45e-10;22!UBERON:0000956;1.16e-09;25!UBERON:0000203;1.16e-09;25!UBERON:0001950;1.33e-09;20!UBERON:0001869;2.75e-09;32!UBERON:0002791;5.21e-09;32!UBERON:0003528;7.16e-09;34!UBERON:0002020;7.16e-09;34!UBERON:0001893;8.75e-09;34!UBERON:0002780;6.88e-08;41!UBERON:0001890;6.88e-08;41!UBERON:0000073;4.58e-07;53!UBERON:0002616;4.58e-07;53 | |||
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| ||
|short_description=p1@GRAMD4 | |short_description=p1@GRAMD4 | ||
}} | }} |
Latest revision as of 05:53, 25 September 2015
Short description: | p1@GRAMD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GRAMD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000431155_5end |
EntrezGene: | GRAMD4 |
HGNC: | 29113 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 2.50e-17 | 108 |
common myeloid progenitor | 2.50e-17 | 108 |
granulocyte monocyte progenitor cell | 1.39e-14 | 67 |
macrophage dendritic cell progenitor | 4.48e-13 | 61 |
monopoietic cell | 3.03e-12 | 59 |
monocyte | 3.03e-12 | 59 |
monoblast | 3.03e-12 | 59 |
promonocyte | 3.03e-12 | 59 |
myeloid lineage restricted progenitor cell | 1.29e-11 | 66 |
myeloid leukocyte | 2.17e-11 | 72 |
hematopoietic stem cell | 1.02e-10 | 168 |
defensive cell | 5.39e-10 | 48 |
phagocyte | 5.39e-10 | 48 |
hematopoietic cell | 2.77e-09 | 177 |
hematopoietic oligopotent progenitor cell | 3.12e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.12e-09 | 161 |
classical monocyte | 1.63e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.63e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.33e-16 | 114 |
neural tube | 1.47e-12 | 56 |
neural rod | 1.47e-12 | 56 |
future spinal cord | 1.47e-12 | 56 |
neural keel | 1.47e-12 | 56 |
bone element | 1.93e-12 | 82 |
bone marrow | 3.86e-12 | 76 |
regional part of nervous system | 1.06e-11 | 53 |
regional part of brain | 1.06e-11 | 53 |
neurectoderm | 3.89e-11 | 86 |
neural plate | 7.62e-11 | 82 |
presumptive neural plate | 7.62e-11 | 82 |
regional part of cerebral cortex | 2.65e-10 | 22 |
telencephalon | 2.92e-10 | 34 |
cerebral hemisphere | 3.14e-10 | 32 |
brain grey matter | 3.43e-10 | 34 |
gray matter | 3.43e-10 | 34 |
regional part of forebrain | 3.57e-10 | 41 |
forebrain | 3.57e-10 | 41 |
anterior neural tube | 3.57e-10 | 41 |
future forebrain | 3.57e-10 | 41 |
hematopoietic system | 5.28e-10 | 98 |
blood island | 5.28e-10 | 98 |
regional part of telencephalon | 6.43e-10 | 32 |
cerebral cortex | 1.23e-09 | 25 |
pallium | 1.23e-09 | 25 |
immune system | 1.30e-09 | 93 |
neocortex | 1.39e-09 | 20 |
central nervous system | 1.58e-09 | 81 |
nervous system | 5.85e-09 | 89 |
skeletal element | 1.25e-08 | 90 |
hemolymphoid system | 1.28e-08 | 108 |
brain | 1.42e-08 | 68 |
future brain | 1.42e-08 | 68 |
pre-chordal neural plate | 1.89e-08 | 61 |
ecto-epithelium | 2.87e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 4.94e-08 | 31 |
leukemia | 5.79e-08 | 39 |