FFCP PHASE1:Hg19::chr3:14444209..14444220,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:14444209..14444220,+ to FFCP PHASE1:Hg19::chr3:14444209..14444220,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6533 | |EntrezGene=6533 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11052 | |HGNC=11052 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=61bp_to_ENST00000484191_5end | |||
|cluster_id=chr3:14444209..14444220,+ | |||
|description=CAGE_peak_3_at_SLC6A6_5end | |||
|id=chr3:14444209..14444220,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.87e-25!112;CL:0000049!1.87e-25!112;CL:0000988!1.61e-23!182;CL:0000037!1.23e-22!172;CL:0000566!1.23e-22!172;CL:0000766!2.92e-22!76;CL:0002032!2.39e-21!165;CL:0000837!2.39e-21!165;CL:0000738!7.50e-21!140;CL:0000557!1.02e-19!71;CL:0000134!1.08e-19!358;CL:0002320!2.26e-19!365;CL:0000219!1.71e-17!390;CL:0002009!3.40e-17!65;CL:0000839!3.75e-17!70;CL:0002194!4.13e-16!63;CL:0000576!4.13e-16!63;CL:0000040!4.13e-16!63;CL:0000559!4.13e-16!63;CL:0002057!5.67e-15!42;CL:0002031!6.84e-14!124;CL:0000048!2.65e-13!430;CL:0000860!5.83e-13!45;CL:0002087!6.13e-13!119;CL:0000034!1.92e-12!444;CL:0000723!2.12e-12!436 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.04e-18;39!CL:0000234;8.04e-18;39!CL:0000860;1.25e-17;33!CL:0002057;1.25e-17;33!CL:0000766;1.83e-12;69!CL:0000576;1.12e-11;48!CL:0000763;2.44e-08;100!CL:0000094;9.04e-08;8!CL:0000738;3.74e-07;136!CL:0000451;5.43e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,2.68e-30,108;CL:0000049,2.68e-30,108;CL:0000766,7.33e-30,72;CL:0000988,5.64e-28,177;CL:0000738,3.80e-27,136;CL:0000037,7.58e-27,168;CL:0000557,4.29e-26,67;CL:0002032,1.24e-24,161;CL:0000837,1.24e-24,161;CL:0000473,5.69e-23,48;CL:0000234,5.69e-23,48;CL:0000839,2.06e-22,66;CL:0002009,2.33e-22,61;CL:0000134,1.80e-21,354;CL:0002194,9.20e-21,59;CL:0000576,9.20e-21,59;CL:0000040,9.20e-21,59;CL:0000559,9.20e-21,59;CL:0002320,1.41e-20,361;CL:0000219,2.77e-20,386;CL:0000860,1.15e-18,42;CL:0002057,1.15e-18,42;CL:0002031,1.24e-17,120;CL:0002087,8.54e-16,115;CL:0000048,1.64e-13,427;CL:0000034,5.50e-13,441;CL:0000723,1.08e-12,433;CL:0000094,4.53e-08,8;CL:0000451,4.12e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;2.42e-14;42!CL:0000049;2.00e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.83e-23!102;UBERON:0003061!6.83e-23!102;UBERON:0002193!5.29e-22!112;UBERON:0002384!1.68e-18!375;UBERON:0002371!8.56e-17!80;UBERON:0001474!1.34e-14!86;UBERON:0002405!1.21e-11!115;UBERON:0004765!1.52e-11!101;UBERON:0001434!1.52e-11!101;UBERON:0003081!1.02e-08!216;UBERON:0000178!6.77e-07!15;UBERON:0000179!6.77e-07!15;UBERON:0000463!6.77e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.53e-08;15!UBERON:0000179;1.53e-08;15!UBERON:0000463;1.53e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.03e-31,98;UBERON:0003061,1.03e-31,98;UBERON:0002193,7.03e-28,108;UBERON:0002371,1.10e-23,76;UBERON:0002405,1.12e-20,93;UBERON:0001474,1.90e-20,82;UBERON:0002384,7.24e-20,371;UBERON:0004765,7.15e-17,90;UBERON:0001434,1.05e-14,100;UBERON:0003081,2.99e-12,203;UBERON:0000178,9.19e-09,15;UBERON:0000179,9.19e-09,15;UBERON:0000463,9.19e-09,15 | |||
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| ||
|short_description=p3@SLC6A6 | |||
}} | }} |
Latest revision as of 05:41, 25 September 2015
Short description: | p3@SLC6A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC6A6_5end |
Coexpression cluster: | NA |
Association with transcript: | 61bp_to_ENST00000484191_5end |
EntrezGene: | SLC6A6 |
HGNC: | 11052 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 2.68e-30 | 108 |
common myeloid progenitor | 2.68e-30 | 108 |
myeloid leukocyte | 7.33e-30 | 72 |
hematopoietic cell | 5.64e-28 | 177 |
leukocyte | 3.80e-27 | 136 |
hematopoietic stem cell | 7.58e-27 | 168 |
granulocyte monocyte progenitor cell | 4.29e-26 | 67 |
hematopoietic oligopotent progenitor cell | 1.24e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.24e-24 | 161 |
defensive cell | 5.69e-23 | 48 |
phagocyte | 5.69e-23 | 48 |
myeloid lineage restricted progenitor cell | 2.06e-22 | 66 |
macrophage dendritic cell progenitor | 2.33e-22 | 61 |
mesenchymal cell | 1.80e-21 | 354 |
monopoietic cell | 9.20e-21 | 59 |
monocyte | 9.20e-21 | 59 |
monoblast | 9.20e-21 | 59 |
promonocyte | 9.20e-21 | 59 |
connective tissue cell | 1.41e-20 | 361 |
motile cell | 2.77e-20 | 386 |
classical monocyte | 1.15e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.15e-18 | 42 |
hematopoietic lineage restricted progenitor cell | 1.24e-17 | 120 |
nongranular leukocyte | 8.54e-16 | 115 |
multi fate stem cell | 1.64e-13 | 427 |
stem cell | 5.50e-13 | 441 |
somatic stem cell | 1.08e-12 | 433 |
granulocyte | 4.53e-08 | 8 |
dendritic cell | 4.12e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.03e-31 | 98 |
blood island | 1.03e-31 | 98 |
hemolymphoid system | 7.03e-28 | 108 |
bone marrow | 1.10e-23 | 76 |
immune system | 1.12e-20 | 93 |
bone element | 1.90e-20 | 82 |
connective tissue | 7.24e-20 | 371 |
skeletal element | 7.15e-17 | 90 |
skeletal system | 1.05e-14 | 100 |
lateral plate mesoderm | 2.99e-12 | 203 |
blood | 9.19e-09 | 15 |
haemolymphatic fluid | 9.19e-09 | 15 |
organism substance | 9.19e-09 | 15 |