FFCP PHASE1:Hg19::chr19:11530043..11530048,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57139 | |EntrezGene=57139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30282 | |HGNC=30282 | ||
|TSSclassifier=strong | |||
|UniProt=Q3MIN7,B5ME84,B7ZL22 | |UniProt=Q3MIN7,B5ME84,B7ZL22 | ||
|association_with_transcript=-25bp_to_ENST00000380456,ENST00000393423,NM_001035223,NM_001161616,uc002mrm.2,uc002mrn.2,uc002mro.2,uc002mrp.2,uc002mrq.2_5end | |association_with_transcript=-25bp_to_ENST00000380456,ENST00000393423,NM_001035223,NM_001161616,uc002mrm.2,uc002mrn.2,uc002mro.2,uc002mrp.2,uc002mrq.2_5end | ||
|cluster_id=chr19:11530043..11530048,- | |||
|description=CAGE_peak_4_at_RGL3_5end | |description=CAGE_peak_4_at_RGL3_5end | ||
|id=chr19:11530043..11530048,- | |id=chr19:11530043..11530048,- | ||
|ontology_enrichment_celltype=CL:0002149;1.54e-15;6!CL:0002255;1.54e-15;6 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0002149;1.54e-15;6!CL:0002255;1.54e-15;6 | ||
|ontology_enrichment_disease=DOID:3001;1.54e-15;6!DOID:3119;4.71e-07;14 | |ontology_enrichment_celltype_v019_2=CL:0002149,1.51e-15,6;CL:0002255,1.51e-15,6 | ||
|ontology_enrichment_uberon=UBERON:0006947;2.11e-30;3!UBERON:0004054;2.11e-30;3!UBERON:0005904;5.55e-23;4!UBERON:0004175;1.15e-16;21!UBERON:0001000;2.54e-11;1!UBERON:0000998;2.54e-11;1!UBERON:0000941;2.54e-11;1!UBERON:0001301;2.54e-11;1!UBERON:0001785;2.54e-11;1!UBERON:0002464;2.54e-11;1!UBERON:0004904;2.54e-11;1!UBERON:0006868;2.54e-11;1!UBERON:0001021;2.54e-11;1!UBERON:0005352;2.54e-11;1!UBERON:0000058;1.51e-09;10!UBERON:0002046;4.40e-09;5!UBERON:0003135;1.00e-08;11!UBERON:0003133;5.54e-07;44 | |ontology_enrichment_development_v019=UBERON:0007297;7.01e-21;2!UBERON:0005754;2.54e-11;1!UBERON:0005425;2.54e-11;1!UBERON:0008425;2.54e-11;1!UBERON:0003918;1.51e-09;10!UBERON:0007687;1.51e-09;10!UBERON:0007123;4.40e-09;5 | ||
|ontology_enrichment_disease=DOID:305!5.38e-12!106;DOID:0050687!6.72e-11!143 | |||
|ontology_enrichment_disease_v019=DOID:3001;1.54e-15;6!DOID:3119;4.71e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,1.51e-15,6;DOID:3119,3.83e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.19e-18!115;UBERON:0000062!1.44e-07!511;UBERON:0002294!2.67e-07!7;UBERON:0001173!2.67e-07!7;UBERON:0004912!2.67e-07!7;UBERON:0000073!3.03e-07!94;UBERON:0001016!3.03e-07!94;UBERON:0001017!6.10e-07!82;UBERON:0005743!7.12e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;2.11e-30;3!UBERON:0004054;2.11e-30;3!UBERON:0005904;5.55e-23;4!UBERON:0004175;1.15e-16;21!UBERON:0001000;2.54e-11;1!UBERON:0000998;2.54e-11;1!UBERON:0000941;2.54e-11;1!UBERON:0001301;2.54e-11;1!UBERON:0001785;2.54e-11;1!UBERON:0002464;2.54e-11;1!UBERON:0004904;2.54e-11;1!UBERON:0006868;2.54e-11;1!UBERON:0001021;2.54e-11;1!UBERON:0005352;2.54e-11;1!UBERON:0000058;1.51e-09;10!UBERON:0002046;4.40e-09;5!UBERON:0003135;1.00e-08;11!UBERON:0003133;5.54e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,5.53e-30,3;UBERON:0004054,5.53e-30,3;UBERON:0005904,1.14e-22,4;UBERON:0004175,7.55e-14,25;UBERON:0001301,1.97e-11,1;UBERON:0000941,3.63e-11,1;UBERON:0001785,3.63e-11,1;UBERON:0002464,3.63e-11,1;UBERON:0004904,3.63e-11,1;UBERON:0001021,3.63e-11,1;UBERON:0003902,3.63e-11,1;UBERON:0005425,3.63e-11,1;UBERON:0000998,4.44e-11,1;UBERON:0006868,4.44e-11,1;UBERON:0001000,4.91e-11,1;UBERON:0005352,4.91e-11,1;UBERON:0002046,3.39e-09,5;UBERON:0004117,3.39e-09,5;UBERON:0007689,3.39e-09,5;UBERON:0007123,3.39e-09,5;UBERON:0003091,3.39e-09,5;UBERON:0003135,1.29e-08,11;UBERON:0003133,5.16e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0.289693037921647,0,1.45990461090791,0.0945348171640679,0,0,0.458426764241994,0,0,0,0,0.26591592103773,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0.312160076830321,0,0.298897361103602,0,0,0,0,0,0.309977343527296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0.323292113637624,0,0,0,0,0,0,0.365921118388786,0.265059536642971,0.116193942869518,0.10366105501537,0,1.45990943630332,0,0,0,0,0,0,0,0.241011029883482,0.220587945464788,0.217879444092406,0,0.269662616320329,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0.50496973370552,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0.451199612907412,0.231046011313244,0,0,0.211103257785751,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.515205058238611,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5740617341532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0.379473173765715,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0.307160702099232,0,0.140669416410513,0,0,0,0.19924798825107,0.276283915531148,0.755798243562828,0.20453736500431,0,0,0.539210106883961,0.537063524026827,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,1.83665999992011,0,0,0.254253650292766,0.472775363535873,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0.32681539055697,0,0.230850775511391,0.113942055847001,0.46112780877612,0.359030577639089,0.217294743844016,0.31900115973192,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0.816164040795739,0.424059214301822,0,0,0.265372693510018,0,0.296521128680622,0.123563938946503,0,0.202203398942031,0,0.234264445725339,0,0,0.242780379534093,1.18375320854817,0,0,0.31593289814244,0,0,0.664653872707185,0,0,0,1.13843818411917,1.8027707491708,1.56203764501618,0,0,1.57254001417827,0,0,0.146178634172371,0.328461828212837,0.0969890164884194,0,0,0,0,0.0633107959558787,0.586654148204409,0.0801588202515337,0.426905989478705,0,1.58499458869517,0,0.343189995723929,0,0.49701014226173,0.471388069233591,0.271808412147228,0.104602846312333,0.101998217636322,0,0,0.410716136675979,0,0,0.262887354279314,0.558564802544508,0.687481272035051,0.717873024576814,0.199679000498991,0,0.223171457441873,0.201550417460179,0,1.16495949527454,0.0787831823072236,0.0824158583811665,0,0.295282444544246,0,0,0.681017030557878,0.643012593860077,0.550157746388935,0.415440338029185,0,0,0.121499113316049,0,0.394028536495991,1.31136470337495,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0.129282956361551,0.52893040697076,0,0.704815022316672,0.320362237703084,0.471612915298998,0,0.496166021811951,0,0,0,0,0,0,0.327872630709804,0.785270481251171,0,0,0.3755727921195,0,0.554645257684261,0.372578417648301,0,0.124980407962107,0,0.856396000634902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453411851024545,0,0,0,0,0,0.176689145945881,0,0,0.256241518587947,0,0,0.276516872303462,0,0,0,0.327609848846413,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.256916900385838,0,0.638535436228605,0.205116364240755,0,0.138314504928436,0.161475645631851,1.42769420259154,0,0,0,0.346576998451015,0,0,0,0.300841313397029,0,0,0,0.327543835020193,0.591424344868181,0.135075169236789,0,0,0.19024743058172,0,0,0.496211178389294,0,0,0,0.336283722218824,0,0,0.887023701626388,0,0.171488009437418,0,0.131545547125698,0.354581522651905,0.222462803784138,0.313972371402056,0.157115589916002,0.560544326627578,0,0.431855182437243,1.43325506366115,0.714765441766563,0,0,0,0,0,0,0,0,0.591660003652827,0.681707238073262,1.27016115057279,0.9164274741762,0,0,0.111855431797792,0,0.243835849964539,0,0,0,0,0,1.59160620129095,0,0.11294608203896,0,0,0,0,3.29222107453066,0,0.471353094203252,0,0.297046400327086,0,0,0.187967835959707,0.322289439867886,0,0,0,0.160482733378337,0,0,0.430018749454354,0,0.203974470572744,0,0,0,0,0,0,0,0,0.509944148709909,0.801652215796681,0.918948995348449,0,0,0,0,0.310298987585686,1.49263787330687,0.714193294391221,0,0.186224142887574,0,1.65482611523229,2.22328907854041,0,0,0.134704106029175,0.215166616178029,0,0,0.213454691755431,0,0,0,0.611207220914332,0,0,0.201273793591026,0 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| ||
|short_description=p4@RGL3 | |short_description=p4@RGL3 | ||
}} | }} |
Latest revision as of 05:16, 25 September 2015
Short description: | p4@RGL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RGL3_5end |
Coexpression cluster: | NA |
Association with transcript: | -25bp_to_ENST00000380456, ENST00000393423, NM_001035223, NM_001161616, uc002mrm.2, uc002mrn.2, uc002mro.2, uc002mrp.2, uc002mrq.2_5end |
EntrezGene: | RGL3 |
HGNC: | 30282 |
UniProt: | Q3MIN7B5ME84B7ZL22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 1.51e-15 | 6 |
stromal cell of endometrium | 1.51e-15 | 6 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 5.53e-30 | 3 |
internal male genitalia | 5.53e-30 | 3 |
duct of male reproductive system | 1.14e-22 | 4 |
internal genitalia | 7.55e-14 | 25 |
epididymis | 1.97e-11 | 1 |
cranial nerve II | 3.63e-11 | 1 |
cranial nerve | 3.63e-11 | 1 |
nerve trunk | 3.63e-11 | 1 |
nerve connecting eye with brain | 3.63e-11 | 1 |
nerve | 3.63e-11 | 1 |
retinal neural layer | 3.63e-11 | 1 |
presumptive neural retina | 3.63e-11 | 1 |
seminal vesicle | 4.44e-11 | 1 |
seminal fluid secreting gland | 4.44e-11 | 1 |
vas deferens | 4.91e-11 | 1 |
spermatic cord | 4.91e-11 | 1 |
thyroid gland | 3.39e-09 | 5 |
pharyngeal pouch | 3.39e-09 | 5 |
thyroid diverticulum | 3.39e-09 | 5 |
pharyngeal pouch 2 | 3.39e-09 | 5 |
thyroid primordium | 3.39e-09 | 5 |
male reproductive organ | 1.29e-08 | 11 |
reproductive organ | 5.16e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 1.51e-15 | 6 |
gastrointestinal system cancer | 3.83e-07 | 14 |