FFCP PHASE1:Hg19::chr19:11530012..11530023,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:11530012..11530023,- to FFCP PHASE1:Hg19::chr19:11530012..11530023,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57139 | |EntrezGene=57139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30282 | |HGNC=30282 | ||
|TSSclassifier=strong | |||
|UniProt=Q3MIN7,B5ME84,B7ZL22 | |UniProt=Q3MIN7,B5ME84,B7ZL22 | ||
|association_with_transcript=0bp_to_ENST00000380456,ENST00000393423,NM_001035223,NM_001161616,uc002mrm.2,uc002mrn.2,uc002mro.2,uc002mrp.2,uc002mrq.2_5end | |||
|cluster_id=chr19:11530012..11530023,- | |||
|coexpression_cluster_id=C3748 | |||
|description=CAGE_peak_3_at_RGL3_5end | |||
|id=chr19:11530012..11530023,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.19e-07;31 | |||
|ontology_enrichment_disease=DOID:305!2.28e-15!106;DOID:0050687!5.76e-13!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.85e-09,106;DOID:0050687,9.06e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.46e-29!115;UBERON:0000062!6.03e-14!511;UBERON:0000466!8.67e-10!126;UBERON:0005177!1.89e-09!107;UBERON:0001017!3.09e-09!82;UBERON:0001049!3.10e-09!57;UBERON:0005068!3.10e-09!57;UBERON:0006241!3.10e-09!57;UBERON:0007135!3.10e-09!57;UBERON:0005743!6.53e-09!86;UBERON:0000077!8.19e-09!130;UBERON:0000468!1.58e-08!659;UBERON:0000064!5.24e-08!219;UBERON:0004921!5.58e-08!129;UBERON:0004185!5.58e-08!129;UBERON:0000955!5.65e-08!69;UBERON:0006238!5.65e-08!69;UBERON:0000477!6.36e-08!286;UBERON:0004111!7.02e-08!241;UBERON:0000073!7.36e-08!94;UBERON:0001016!7.36e-08!94;UBERON:0000025!7.53e-08!194;UBERON:0003075!1.17e-07!86;UBERON:0007284!1.17e-07!86;UBERON:0000467!1.85e-07!625;UBERON:0003886!1.99e-07!63;UBERON:0000464!1.99e-07!104;UBERON:0000480!2.31e-07!626;UBERON:0002417!4.14e-07!61;UBERON:0000916!4.14e-07!61;UBERON:0001007!4.47e-07!155;UBERON:0001555!4.47e-07!155;UBERON:0007026!4.47e-07!155;UBERON:0001041!5.69e-07!98;UBERON:0002616!5.79e-07!59;UBERON:0005172!7.24e-07!55;UBERON:0005173!7.24e-07!55;UBERON:0000475!7.66e-07!365;UBERON:0002553!8.01e-07!70;UBERON:0002780!8.14e-07!41;UBERON:0001890!8.14e-07!41;UBERON:0006240!8.14e-07!41;UBERON:0002346!8.90e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0004175;1.75e-09;21!UBERON:0006947;1.14e-08;3!UBERON:0004054;1.14e-08;3!UBERON:0003978;9.86e-08;3!UBERON:0000946;9.86e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.27e-13,114;UBERON:0004175,3.38e-09,25;UBERON:0006947,1.03e-08,3;UBERON:0004054,1.03e-08,3;UBERON:0005177,6.85e-08,101;UBERON:0003978,1.72e-07,3;UBERON:0009751,1.72e-07,3;UBERON:0000946,1.72e-07,3;UBERON:0002523,1.72e-07,3;UBERON:0005983,1.72e-07,3;UBERON:0002165,1.72e-07,3;UBERON:0002062,1.72e-07,3;UBERON:0007280,1.72e-07,3;UBERON:0003133,2.49e-07,48 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0.245733936501509,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0.486634870302636,0,0,0,0.785874452986276,0,0,1.29818957461873,0.522389211897802,0.132957960518865,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61246251376468,0,0.413303124703062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0.515281080091258,0.18611685633159,0.337552664482532,0,0,0,0.646584227275248,0,0.10075209822764,0,0,0,0,0.487894824518382,1.19276791489337,0.116193942869518,0.518305275076852,0,0,0,0,0,0,0,0.946454400318751,0.674338760312407,0.241011029883482,0.330881918197182,0.217879444092406,0,0.539325232640658,1.37355025587742,0.38474715694639,0,0,0,0,2.53510069643662,0,0.590789906681404,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0.492663237895943,0.44024217006613,0,0.288239906833923,0.12624243342638,0.126995788584338,0,0,0,0.102827492703324,0.600686115687835,0.285826432630578,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0.356857977594324,0.473107245101804,0.937131319941706,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0.483437798366489,0,0,0,0.546273504020151,0,1.80479845162965,0.539107359730903,0,0,0.211103257785751,0,0,0,0,0.270946437543853,0,0.764628819135115,1.66215201785745,0.223874754722178,0,0,0,0,0,1.03041011647722,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25924938732256,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,1.31857361344705,0,0,0,0.47748896947538,0.296964680832639,0,0,0.844016498463076,0,0,0,0.796991953004279,0.552567831062295,3.02319297425131,1.22722419002586,0,0,1.25815691606258,0.179021174675609,0,0.394573622547734,0,0,0.969332746095218,0.0927680981618513,0,0,3.49839999984783,0,0,0.762760950878299,1.65471377237555,0,0,0,0,0.482385754501632,1.52581736317083,0.331737779793674,0,0.658156191461918,0.21787692703798,0,1.00035336054936,0,0.46112780877612,1.43612231055635,0.108647371922008,1.91400695839152,0.274792780205587,1.06606955203727,0,0,0,0,0.19606253431774,0,0,0,0,1.95879369790977,0.706765357169704,0,0,0.619202951523374,0,0,0,0.208843899010911,0.741412462787447,0,0.468528891450678,0,0,0.728341138602278,4.3404284313433,0,0,0.568679216656392,0,0,0,0,1.2557316736289,1.19472429772959,1.42304773014896,0.416024019039416,3.81831424337288,0,0,4.19344003780872,0,0.580537987734511,0.803982487948041,0.985385484638511,0.0969890164884194,0,0,0,0,0.126621591911757,1.75996244461323,0.721429382263803,2.34798294213288,0,2.59362750877391,0,0,0,0.49701014226173,1.64985824231757,0.135904206073614,0.523014231561666,0.203996435272644,1.15580235960608,0.600420288709789,0.821432273351958,0,0.429765441419957,0,1.11712960508902,1.3749625440701,4.30723814746088,0.998395002494955,0,1.11585728720936,0.739018197353989,0.360299883542404,5.82479747637269,0.157566364614447,0.0824158583811665,0.26961417541674,0.78741985211799,0,0,0.953423842781029,1.44677833618517,1.78801267576404,0.415440338029185,0,0,0.485996453264197,0,2.12775409707835,3.93409411012486,0,0.717149357331379,0,0,1.32418394073086,0,0,0,0,1.19730191562487,0,0.170388021785422,0.453248366080503,0.293104467356165,2.65013777824443,0.517131825446202,1.45455861916959,0.342173675768659,2.81926008926669,1.38823636338003,0.943225830597996,4.14239055347196,0.496166021811951,0,0,0,0,0,0,0,1.25643277000187,0,0.732157589411779,1.6274820991845,1.14681839138014,1.77486482458964,0.683060432355218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0,0.226705925512272,0,0.489473409012935,0,0,0,0.530067437837643,0,0,0.76872455576384,0,0,1.10606748921385,0,0,0,0.327609848846413,0.245772908753719,1.47918486351039,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,1.75597244962866,1.02558182120378,0,0.553258019713743,0.161475645631851,0,0,0,0,1.61735932610474,0.381382095467167,0,0,0.601682626794058,0,1.56302802246618,1.04762677792569,0,0.295712172434091,0.540300676947157,0,1.65349437200947,0.380494861163441,0,0,0.496211178389294,0,0,0.535701835878287,1.3451348888753,0,0.227662191351298,1.5966426629275,0,0.51446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| 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| ||
|short_description=p3@RGL3 | |||
}} | }} |
Latest revision as of 05:16, 25 September 2015
Short description: | p3@RGL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RGL3_5end |
Coexpression cluster: | C3748_smallcell_thyroid_seminal_ductus_breast_somatostatinoma_small |
Association with transcript: | 0bp_to_ENST00000380456, ENST00000393423, NM_001035223, NM_001161616, uc002mrm.2, uc002mrn.2, uc002mro.2, uc002mrp.2, uc002mrq.2_5end |
EntrezGene: | RGL3 |
HGNC: | 30282 |
UniProt: | Q3MIN7B5ME84B7ZL22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.27e-13 | 114 |
internal genitalia | 3.38e-09 | 25 |
male genital duct | 1.03e-08 | 3 |
internal male genitalia | 1.03e-08 | 3 |
trunk region element | 6.85e-08 | 101 |
valve | 1.72e-07 | 3 |
cardiac mesenchyme | 1.72e-07 | 3 |
cardial valve | 1.72e-07 | 3 |
tunica intima | 1.72e-07 | 3 |
heart layer | 1.72e-07 | 3 |
endocardium | 1.72e-07 | 3 |
endocardial cushion | 1.72e-07 | 3 |
presumptive endocardium | 1.72e-07 | 3 |
reproductive organ | 2.49e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.85e-09 | 106 |
cell type cancer | 9.06e-07 | 143 |