FFCP PHASE1:Hg19::chr19:11529968..11529975,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57139 | |EntrezGene=57139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30282 | |HGNC=30282 | ||
|TSSclassifier=strong | |||
|UniProt=B4DE00 | |UniProt=B4DE00 | ||
|association_with_transcript=14bp_to_ENST00000453604_5end | |association_with_transcript=14bp_to_ENST00000453604_5end | ||
|cluster_id=chr19:11529968..11529975,- | |||
|coexpression_cluster_id=C3748 | |coexpression_cluster_id=C3748 | ||
|description=CAGE_peak_2_at_RGL3_5end | |description=CAGE_peak_2_at_RGL3_5end | ||
|id=chr19:11529968..11529975,- | |id=chr19:11529968..11529975,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!8.71e-11!106;DOID:0050687!1.25e-08!143 | |ontology_enrichment_disease=DOID:305!8.71e-11!106;DOID:0050687!1.25e-08!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.02e-26!115;UBERON:0001049!8.39e-15!57;UBERON:0005068!8.39e-15!57;UBERON:0006241!8.39e-15!57;UBERON:0007135!8.39e-15!57;UBERON:0005743!8.79e-13!86;UBERON:0001017!1.20e-12!82;UBERON:0000073!1.05e-11!94;UBERON:0001016!1.05e-11!94;UBERON:0003075!1.18e-11!86;UBERON:0007284!1.18e-11!86;UBERON:0002780!1.92e-11!41;UBERON:0001890!1.92e-11!41;UBERON:0006240!1.92e-11!41;UBERON:0003080!6.19e-11!42;UBERON:0000955!6.54e-11!69;UBERON:0006238!6.54e-11!69;UBERON:0002616!6.75e-11!59;UBERON:0000062!1.21e-10!511;UBERON:0000025!1.34e-10!194;UBERON:0002020!1.61e-10!34;UBERON:0003528!1.61e-10!34;UBERON:0002346!1.91e-10!90;UBERON:0001893!6.18e-10!34;UBERON:0002791!9.09e-10!33;UBERON:0004111!1.67e-09!241;UBERON:0001869!8.56e-09!32;UBERON:0000477!1.72e-08!286;UBERON:0002619!4.22e-08!22;UBERON:0005177!4.43e-08!107;UBERON:0000468!2.87e-07!659;UBERON:0003056!3.79e-07!61;UBERON:0000466!7.22e-07!126 | |ontology_enrichment_uberon=UBERON:0007023!2.02e-26!115;UBERON:0001049!8.39e-15!57;UBERON:0005068!8.39e-15!57;UBERON:0006241!8.39e-15!57;UBERON:0007135!8.39e-15!57;UBERON:0005743!8.79e-13!86;UBERON:0001017!1.20e-12!82;UBERON:0000073!1.05e-11!94;UBERON:0001016!1.05e-11!94;UBERON:0003075!1.18e-11!86;UBERON:0007284!1.18e-11!86;UBERON:0002780!1.92e-11!41;UBERON:0001890!1.92e-11!41;UBERON:0006240!1.92e-11!41;UBERON:0003080!6.19e-11!42;UBERON:0000955!6.54e-11!69;UBERON:0006238!6.54e-11!69;UBERON:0002616!6.75e-11!59;UBERON:0000062!1.21e-10!511;UBERON:0000025!1.34e-10!194;UBERON:0002020!1.61e-10!34;UBERON:0003528!1.61e-10!34;UBERON:0002346!1.91e-10!90;UBERON:0001893!6.18e-10!34;UBERON:0002791!9.09e-10!33;UBERON:0004111!1.67e-09!241;UBERON:0001869!8.56e-09!32;UBERON:0000477!1.72e-08!286;UBERON:0002619!4.22e-08!22;UBERON:0005177!4.43e-08!107;UBERON:0000468!2.87e-07!659;UBERON:0003056!3.79e-07!61;UBERON:0000466!7.22e-07!126 | ||
|ontology_enrichment_uberon_v019=UBERON:0000125;4.31e-09;9!UBERON:0002308;4.31e-09;9!UBERON:0006947;6.86e-09;3!UBERON:0004054;6.86e-09;3!UBERON:0007023;9.11e-07;114!UBERON:0005904;9.95e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.34e-16,114;UBERON:0001049,4.76e-09,56;UBERON:0005068,4.76e-09,56;UBERON:0006241,4.76e-09,56;UBERON:0007135,4.76e-09,56;UBERON:0006947,5.30e-09,3;UBERON:0004054,5.30e-09,3;UBERON:0000125,5.75e-09,9;UBERON:0002308,5.75e-09,9;UBERON:0003075,2.16e-08,82;UBERON:0007284,2.16e-08,82;UBERON:0000025,6.93e-08,192;UBERON:0002346,9.20e-08,86;UBERON:0000073,2.19e-07,53;UBERON:0002616,2.19e-07,53;UBERON:0003528,3.42e-07,34;UBERON:0002020,3.42e-07,34;UBERON:0005904,8.24e-07,4 | |||
|phase1_expression=0,0,0.422863212287913,0,0,0.872338524100369,0,0,0,0.491467873003018,2.79120467188971,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45990461090791,0,0,0,0.982343066232845,0,0,0.649094787309367,0.870648686496336,0.26591592103773,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0.805658634218294,0,0.488124115096339,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0,0,0.149448680551801,0,0,0,0.204154171254893,0,0.516628905878827,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0,0,0.161646056818812,0.355009592516614,0,0,0,0,0,0.487894824518382,0.265059536642971,0.232387885739037,0.414644220061482,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0.653638332277218,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,1.26755034821831,3.9313088667105,1.77236972004421,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.880484340132261,0.621984346622316,0.720599767084807,1.13618190083742,0,0.381988425558278,1.17217447210047,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0.823240336780769,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0.535286966391485,0.630809660135739,0.468565659970853,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0.61384789315225,0,0,0,0,1.48418066444991,0,0,0,0,0,0.966875596732978,0,0,0,0,0,0.902399225814824,0.847168708148562,0,0,0.527758144464379,0,0,0,0,0,0,1.27438136522519,0,0,0,0,0.256450125116389,0,0,1.13345112812495,0,0.330037999682352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.929691098594572,1.88887408098384,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0.379473173765715,0,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0,0.23874448473769,0.296964680832639,0,0.994147647766298,2.11004124615769,0,0,0,1.39473591775749,0,2.26739473068848,1.1249555075237,0,0,1.07842021376792,0.716084698702437,0,0.394573622547734,0,2.22273980289274,0,0.278304294485554,0,0,4.54791999980218,0,0,0.762760950878299,0.472775363535873,0,0,0.173624994933292,2.65722415744152,1.4471572635049,0,0.442317039724898,0.295547618953547,0.219385397153973,1.0893846351899,0,1.38510465306835,0.113942055847001,0.69169171316418,0.718061155278177,0.325942115766024,1.5950057986596,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,2.28525931422807,0.848118428603645,0,0,0.707660516026713,0,0,0,0,0.876214728748802,0.802577647298789,0.234264445725339,0,0,0.242780379534093,4.3404284313433,1.20990716048664,0,0.379119477770928,0,0,0,0,0.313932918407225,0,0.853828638089378,0.277349346026277,0.867798691675654,0,0,2.97035336011451,0,1.64485763191445,2.19267951258557,1.06750094169172,0.0969890164884194,0,0.677942222341597,0,0.397429223405979,0.253243183823515,2.34661659281764,0.400794101257669,1.06726497369676,0,2.01726584015748,0,0.171594997861965,0,1.36677789121976,1.41416420770077,0.135904206073614,0.104602846312333,0.407992870545287,0.577901179803038,0,2.19048606227189,0,0,0,3.0721064139948,0.916641696046735,4.30723814746088,0.399358000997982,0.429226048136571,0.446342914883745,0.470284307407084,0,2.32991899054908,0.157566364614447,0.247247575143499,0.202210631562555,0.295282444544246,0,1.59045937961861,2.58786471611994,0.964518890790115,1.37539436597234,0.83088067605837,0,0,0.971992906528395,0,1.33969702408637,3.30463905250488,0,0.537862017998534,0,0,0,0,0,0,0,2.39460383124975,0,0,0.566560457600628,1.02586563574658,0,1.0342636508924,2.38018683136842,0.171086837884329,2.11444506695002,0.854299300541557,3.45849471219265,1.24271716604159,0,0,0,0,0,0.7520696820681,0.306345576763462,0.327872630709804,1.57054096250234,0,0.488105059607853,1.6274820991845,0.573409195690071,3.54972964917927,1.05563885000352,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,0,0,0.530067437837643,0,0,0.256241518587947,0,0.303859956177382,0.829550616910385,0,0,0,0,0,1.90180911022764,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0.6124909547064,0.385375350578757,0,2.39450788585727,0.41023272848151,0,0.276629009856872,0.968853873791107,0,0,0,0,1.15525666150338,0.381382095467167,0,0,0.300841313397029,0.20170506870352,2.34454203369928,0.261906694481422,0.163771917510097,1.47856086217045,0.135075169236789,0.781078098613847,0.826747186004736,0.760989722326882,0,0,0,0,0,0,1.3451348888753,0,0.682986574053893,1.24183318227694,0,0,0.611727596791485,0.526182188502793,0.472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| ||
|short_description=p2@RGL3 | |short_description=p2@RGL3 | ||
}} | }} |
Latest revision as of 05:13, 25 September 2015
Short description: | p2@RGL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RGL3_5end |
Coexpression cluster: | C3748_smallcell_thyroid_seminal_ductus_breast_somatostatinoma_small |
Association with transcript: | 14bp_to_ENST00000453604_5end |
EntrezGene: | RGL3 |
HGNC: | 30282 |
UniProt: | B4DE00 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.34e-16 | 114 |
neural tube | 4.76e-09 | 56 |
neural rod | 4.76e-09 | 56 |
future spinal cord | 4.76e-09 | 56 |
neural keel | 4.76e-09 | 56 |
male genital duct | 5.30e-09 | 3 |
internal male genitalia | 5.30e-09 | 3 |
neural nucleus | 5.75e-09 | 9 |
nucleus of brain | 5.75e-09 | 9 |
neural plate | 2.16e-08 | 82 |
presumptive neural plate | 2.16e-08 | 82 |
tube | 6.93e-08 | 192 |
neurectoderm | 9.20e-08 | 86 |
regional part of nervous system | 2.19e-07 | 53 |
regional part of brain | 2.19e-07 | 53 |
brain grey matter | 3.42e-07 | 34 |
gray matter | 3.42e-07 | 34 |
duct of male reproductive system | 8.24e-07 | 4 |