FFCP PHASE1:Hg19::chr19:11200163..11200180,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:11200163..11200180,+
|short_description=p2@LDLR
|description=CAGE_peak_2_at_LDLR_5end
|association_with_transcript=9bp_to_ENST00000558013_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3949 | |EntrezGene=3949 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6547 | |HGNC=6547 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=9bp_to_ENST00000558013_5end | |||
|cluster_id=chr19:11200163..11200180,+ | |||
|coexpression_cluster_id=C2475 | |||
|description=CAGE_peak_2_at_LDLR_5end | |||
|id=chr19:11200163..11200180,+ | |||
|ontology_enrichment_celltype=CL:0000012!3.29e-27!682;CL:0000548!3.25e-26!679;CL:0000004!3.25e-26!679;CL:0000255!3.25e-26!679;CL:0002371!4.26e-25!591;CL:0000144!1.35e-24!625;CL:0000003!1.60e-16!722;CL:0000063!2.49e-13!578;CL:0000220!2.79e-12!246;CL:0002321!2.88e-12!248;CL:0000066!1.40e-08!254;CL:0000223!2.85e-08!59;CL:0002057!8.08e-08!42;CL:1000449!1.27e-07!16;CL:0002076!4.68e-07!43;CL:0000860!6.20e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.48e-07;33!CL:0002057;1.48e-07;33!CL:1000449;2.23e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.46e-12,250;CL:0000066,2.25e-08,253;CL:0000223,5.87e-08,58;CL:0000860,8.70e-08,42;CL:0002057,8.70e-08,42;CL:1000449,1.93e-07,15;CL:0000473,2.94e-07,48;CL:0000234,2.94e-07,48;CL:0002076,9.81e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.01e-10!143;UBERON:0000926!9.49e-09!448;UBERON:0004120!9.49e-09!448;UBERON:0006603!9.49e-09!448;UBERON:0003914!1.56e-08!118;UBERON:0004211!1.27e-07!16;UBERON:0001285!1.27e-07!16;UBERON:0007684!1.27e-07!16;UBERON:0003220!1.27e-07!16;UBERON:0004208!1.27e-07!16;UBERON:0002100!1.97e-07!216;UBERON:0000480!5.06e-07!626;UBERON:0000467!8.64e-07!625;UBERON:0006555!8.79e-07!17;UBERON:0005103!8.79e-07!17;UBERON:0000083!8.79e-07!17;UBERON:0009201!8.79e-07!17;UBERON:0004819!8.79e-07!17;UBERON:0006553!8.79e-07!17;UBERON:0003074!8.79e-07!17;UBERON:0003060!8.79e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.23e-07;15!UBERON:0004819;2.23e-07;15!UBERON:0001285;2.23e-07;15!UBERON:0007684;2.23e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,2.14e-08,117;UBERON:0005256,8.20e-08,122;UBERON:0003104,1.47e-07,160;UBERON:0009142,1.47e-07,160;UBERON:0004211,1.93e-07,15;UBERON:0009773,1.93e-07,15;UBERON:0001231,1.93e-07,15;UBERON:0001285,1.93e-07,15;UBERON:0007684,1.93e-07,15;UBERON:0004208,1.93e-07,15;UBERON:0005423,3.03e-07,581;UBERON:0002204,7.12e-07,167;UBERON:0002050,8.38e-07,564;UBERON:0000490,8.47e-07,148;UBERON:0002100,9.73e-07,199 | |||
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| ||
|short_description=p2@LDLR | |||
}} | }} |
Latest revision as of 04:14, 25 September 2015
Short description: | p2@LDLR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LDLR_5end |
Coexpression cluster: | C2475_immature_mature_Small_serous_Bronchial_Alveolar_Tracheal |
Association with transcript: | 9bp_to_ENST00000558013_5end |
EntrezGene: | LDLR |
HGNC: | 6547 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.46e-12 | 250 |
epithelial cell | 2.25e-08 | 253 |
endodermal cell | 5.87e-08 | 58 |
classical monocyte | 8.70e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.70e-08 | 42 |
epithelial cell of nephron | 1.93e-07 | 15 |
defensive cell | 2.94e-07 | 48 |
phagocyte | 2.94e-07 | 48 |
endo-epithelial cell | 9.81e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 2.14e-08 | 117 |
trunk mesenchyme | 8.20e-08 | 122 |
mesenchyme | 1.47e-07 | 160 |
entire embryonic mesenchyme | 1.47e-07 | 160 |
nephron epithelium | 1.93e-07 | 15 |
renal tubule | 1.93e-07 | 15 |
nephron tubule | 1.93e-07 | 15 |
nephron | 1.93e-07 | 15 |
uriniferous tubule | 1.93e-07 | 15 |
nephrogenic mesenchyme | 1.93e-07 | 15 |
developing anatomical structure | 3.03e-07 | 581 |
musculoskeletal system | 7.12e-07 | 167 |
embryonic structure | 8.38e-07 | 564 |
unilaminar epithelium | 8.47e-07 | 148 |
trunk | 9.73e-07 | 199 |