FFCP PHASE1:Hg19::chr4:130014729..130014777,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=132320 | |EntrezGene=132320 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26406 | |HGNC=26406 | ||
|TSSclassifier=strong | |||
|UniProt=Q96NL6 | |UniProt=Q96NL6 | ||
|association_with_transcript=0bp_to_ENST00000281142,ENST00000434680,NM_144643,uc003igp.2,uc003igq.2,uc003igr.2,uc003igt.3,uc010iob.1_5end | |association_with_transcript=0bp_to_ENST00000281142,ENST00000434680,NM_144643,uc003igp.2,uc003igq.2,uc003igr.2,uc003igt.3,uc010iob.1_5end | ||
|cluster_id=chr4:130014729..130014777,- | |||
|description=CAGE_peak_2_at_SCLT1_5end | |description=CAGE_peak_2_at_SCLT1_5end | ||
|id=chr4:130014729..130014777,- | |id=chr4:130014729..130014777,- | ||
|ontology_enrichment_celltype=CL:0000542!3.66e-17!53;CL:0000051!3.66e-17!53;CL:0000838!5.84e-17!52;CL:0000791!5.23e-10!18;CL:0000789!5.23e-10!18;CL:0002420!5.23e-10!18;CL:0002419!5.23e-10!18;CL:0000790!5.23e-10!18;CL:0000084!2.17e-09!25;CL:0000827!2.17e-09!25;CL:0000037!1.12e-08!172;CL:0000566!1.12e-08!172;CL:0000236!8.21e-08!14;CL:0000945!1.96e-07!24;CL:0000826!1.96e-07!24;CL:0002032!8.03e-07!165;CL:0000837!8.03e-07!165 | |ontology_enrichment_celltype=CL:0000542!3.66e-17!53;CL:0000051!3.66e-17!53;CL:0000838!5.84e-17!52;CL:0000791!5.23e-10!18;CL:0000789!5.23e-10!18;CL:0002420!5.23e-10!18;CL:0002419!5.23e-10!18;CL:0000790!5.23e-10!18;CL:0000084!2.17e-09!25;CL:0000827!2.17e-09!25;CL:0000037!1.12e-08!172;CL:0000566!1.12e-08!172;CL:0000236!8.21e-08!14;CL:0000945!1.96e-07!24;CL:0000826!1.96e-07!24;CL:0002032!8.03e-07!165;CL:0000837!8.03e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000542;8.22e-11;53!CL:0000791;2.14e-10;18!CL:0000789;2.14e-10;18!CL:0002419;2.14e-10;18!CL:0000084;1.06e-09;25!CL:0000236;8.87e-08;13!CL:0000945;1.29e-07;24!CL:0000625;7.34e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,2.12e-17,53;CL:0000051,2.12e-17,53;CL:0000838,3.44e-17,52;CL:0000791,2.68e-10,18;CL:0000789,2.68e-10,18;CL:0002420,2.68e-10,18;CL:0002419,2.68e-10,18;CL:0000790,2.68e-10,18;CL:0000037,6.73e-10,168;CL:0000084,2.36e-09,25;CL:0000827,2.36e-09,25;CL:0000236,4.99e-08,14;CL:0000988,6.56e-08,177;CL:0002032,7.45e-08,161;CL:0000837,7.45e-08,161;CL:0000945,1.23e-07,24;CL:0000826,1.23e-07,24;CL:0000625,7.59e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;8.22e-11;53!CL:0000790;2.14e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.70e-27!115;UBERON:0001017!6.00e-21!82;UBERON:0001049!1.09e-20!57;UBERON:0005068!1.09e-20!57;UBERON:0006241!1.09e-20!57;UBERON:0007135!1.09e-20!57;UBERON:0002616!1.55e-20!59;UBERON:0000073!3.50e-20!94;UBERON:0001016!3.50e-20!94;UBERON:0000955!1.31e-19!69;UBERON:0006238!1.31e-19!69;UBERON:0005743!1.73e-19!86;UBERON:0003080!2.69e-17!42;UBERON:0002780!3.21e-17!41;UBERON:0001890!3.21e-17!41;UBERON:0006240!3.21e-17!41;UBERON:0002346!1.50e-15!90;UBERON:0001893!6.71e-15!34;UBERON:0003075!1.36e-14!86;UBERON:0007284!1.36e-14!86;UBERON:0002020!1.44e-14!34;UBERON:0003528!1.44e-14!34;UBERON:0002791!1.90e-14!33;UBERON:0001869!2.66e-14!32;UBERON:0003056!8.17e-12!61;UBERON:0000956!1.01e-10!25;UBERON:0000203!1.01e-10!25;UBERON:0000153!1.27e-10!129;UBERON:0007811!1.27e-10!129;UBERON:0002619!1.66e-10!22;UBERON:0001950!9.46e-10!20;UBERON:0000924!1.90e-09!173;UBERON:0006601!1.90e-09!173;UBERON:0000033!6.61e-09!123;UBERON:0004121!9.89e-09!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;8.87e-14;32!UBERON:0002791;1.51e-13;32!UBERON:0001893;1.63e-13;34!UBERON:0003528;1.93e-13;34!UBERON:0002020;1.93e-13;34!UBERON:0002780;2.17e-13;41!UBERON:0001890;2.17e-13;41!UBERON:0000073;5.22e-12;53!UBERON:0002616;5.22e-12;53!UBERON:0000956;2.84e-11;25!UBERON:0000203;2.84e-11;25!UBERON:0002619;4.96e-11;22!UBERON:0001950;3.00e-10;20!UBERON:0000955;3.91e-10;68!UBERON:0001017;9.58e-10;75!UBERON:0001016;6.89e-09;83!UBERON:0007023;6.37e-08;114 | |||
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| ||
|short_description=p2@SCLT1 | |short_description=p2@SCLT1 | ||
}} | }} |
Latest revision as of 03:39, 25 September 2015
Short description: | p2@SCLT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCLT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000281142, ENST00000434680, NM_144643, uc003igp.2, uc003igq.2, uc003igr.2, uc003igt.3, uc010iob.1_5end |
EntrezGene: | SCLT1 |
HGNC: | 26406 |
UniProt: | Q96NL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 2.12e-17 | 53 |
common lymphoid progenitor | 2.12e-17 | 53 |
lymphoid lineage restricted progenitor cell | 3.44e-17 | 52 |
mature alpha-beta T cell | 2.68e-10 | 18 |
alpha-beta T cell | 2.68e-10 | 18 |
immature T cell | 2.68e-10 | 18 |
mature T cell | 2.68e-10 | 18 |
immature alpha-beta T cell | 2.68e-10 | 18 |
hematopoietic stem cell | 6.73e-10 | 168 |
T cell | 2.36e-09 | 25 |
pro-T cell | 2.36e-09 | 25 |
B cell | 4.99e-08 | 14 |
hematopoietic cell | 6.56e-08 | 177 |
hematopoietic oligopotent progenitor cell | 7.45e-08 | 161 |
hematopoietic multipotent progenitor cell | 7.45e-08 | 161 |
lymphocyte of B lineage | 1.23e-07 | 24 |
pro-B cell | 1.23e-07 | 24 |
CD8-positive, alpha-beta T cell | 7.59e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.74e-27 | 114 |
nervous system | 4.04e-22 | 89 |
central nervous system | 1.87e-21 | 81 |
neural tube | 5.78e-21 | 56 |
neural rod | 5.78e-21 | 56 |
future spinal cord | 5.78e-21 | 56 |
neural keel | 5.78e-21 | 56 |
regional part of nervous system | 4.41e-20 | 53 |
regional part of brain | 4.41e-20 | 53 |
brain | 7.30e-20 | 68 |
future brain | 7.30e-20 | 68 |
regional part of forebrain | 9.27e-18 | 41 |
forebrain | 9.27e-18 | 41 |
anterior neural tube | 9.27e-18 | 41 |
future forebrain | 9.27e-18 | 41 |
neurectoderm | 1.04e-15 | 86 |
telencephalon | 2.33e-15 | 34 |
brain grey matter | 5.13e-15 | 34 |
gray matter | 5.13e-15 | 34 |
cerebral hemisphere | 9.70e-15 | 32 |
neural plate | 1.01e-14 | 82 |
presumptive neural plate | 1.01e-14 | 82 |
regional part of telencephalon | 2.17e-14 | 32 |
pre-chordal neural plate | 3.24e-12 | 61 |
cerebral cortex | 4.91e-11 | 25 |
pallium | 4.91e-11 | 25 |
regional part of cerebral cortex | 8.18e-11 | 22 |
neocortex | 4.94e-10 | 20 |
ectoderm-derived structure | 6.19e-09 | 171 |
ectoderm | 6.19e-09 | 171 |
presumptive ectoderm | 6.19e-09 | 171 |
ecto-epithelium | 7.02e-09 | 104 |
structure with developmental contribution from neural crest | 2.62e-07 | 132 |