FFCP PHASE1:Hg19::chr16:20775312..20775352,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6296 | |EntrezGene=6296 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10522 | |HGNC=10522 | ||
|TSSclassifier=strong | |||
|UniProt=Q53FZ2 | |UniProt=Q53FZ2 | ||
|association_with_transcript=0bp_to_ENST00000289416,ENST00000440284,NM_005622,NM_202000,uc002dhq.2,uc002dhr.2_5end | |association_with_transcript=0bp_to_ENST00000289416,ENST00000440284,NM_005622,NM_202000,uc002dhq.2,uc002dhr.2_5end | ||
|cluster_id=chr16:20775312..20775352,+ | |||
|coexpression_cluster_id=C3542 | |coexpression_cluster_id=C3542 | ||
|description=CAGE_peak_1_at_ACSM3_5end | |description=CAGE_peak_1_at_ACSM3_5end | ||
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|ontology_enrichment_celltype=CL:0000791!2.62e-09!18;CL:0000789!2.62e-09!18;CL:0002420!2.62e-09!18;CL:0002419!2.62e-09!18;CL:0000790!2.62e-09!18;CL:0000838!6.48e-09!52;CL:0000542!6.52e-09!53;CL:0000051!6.52e-09!53;CL:0000037!9.16e-08!172;CL:0000566!9.16e-08!172;CL:0000988!1.17e-07!182;CL:0000084!3.32e-07!25;CL:0000827!3.32e-07!25 | |ontology_enrichment_celltype=CL:0000791!2.62e-09!18;CL:0000789!2.62e-09!18;CL:0002420!2.62e-09!18;CL:0002419!2.62e-09!18;CL:0000790!2.62e-09!18;CL:0000838!6.48e-09!52;CL:0000542!6.52e-09!53;CL:0000051!6.52e-09!53;CL:0000037!9.16e-08!172;CL:0000566!9.16e-08!172;CL:0000988!1.17e-07!182;CL:0000084!3.32e-07!25;CL:0000827!3.32e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.31e-13;18!CL:0000789;1.31e-13;18!CL:0002419;1.31e-13;18!CL:0000084;1.06e-10;25!CL:0000625;1.92e-09;11 | |ontology_enrichment_celltype_v019=CL:0000791;1.31e-13;18!CL:0000789;1.31e-13;18!CL:0002419;1.31e-13;18!CL:0000084;1.06e-10;25!CL:0000625;1.92e-09;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.21e-13,18;CL:0000789,1.21e-13,18;CL:0002420,1.21e-13,18;CL:0002419,1.21e-13,18;CL:0000790,1.21e-13,18;CL:0000838,1.50e-12,52;CL:0000542,4.10e-12,53;CL:0000051,4.10e-12,53;CL:0000084,7.50e-11,25;CL:0000827,7.50e-11,25;CL:0000625,1.64e-09,11;CL:0000037,1.21e-08,168;CL:0000988,1.28e-08,177;CL:0002032,3.81e-07,161;CL:0000837,3.81e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.31e-13;18!UBERON:0003104;3.98e-08;31 | |ontology_enrichment_development_v019=CL:0000790;1.31e-13;18!UBERON:0003104;3.98e-08;31 | ||
|ontology_enrichment_disease=DOID:2531!9.85e-07!51;DOID:0060083!9.85e-07!51 | |ontology_enrichment_disease=DOID:2531!9.85e-07!51;DOID:0060083!9.85e-07!51 | ||
|ontology_enrichment_disease_v019=DOID:8692;5.06e-08;31!DOID:1240;2.48e-07;39 | |ontology_enrichment_disease_v019=DOID:8692;5.06e-08;31!DOID:1240;2.48e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,2.84e-08,31;DOID:1240,4.20e-08,39;DOID:2531,4.35e-08,51;DOID:0060083,4.35e-08,51 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.11e-07;15!UBERON:0000179;3.11e-07;15!UBERON:0000463;3.11e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;3.11e-07;15!UBERON:0000179;3.11e-07;15!UBERON:0000463;3.11e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.50e-07,15;UBERON:0000179,2.50e-07,15;UBERON:0000463,2.50e-07,15;UBERON:0004921,7.81e-07,118 | |||
|phase1_expression=0,0.428201047781966,0.845726424575827,0,1.34088328328186,0,2.53299878168311,0,0.522371256399677,0,0,0.218441372130172,0,0.247532705920093,0.662794751455832,0,0,0,0,0,0,0,0,0,0.125542639594803,12.7610387599079,7.88165658719479,10.2324015707783,0,1.15148819429164,0.77408061658038,0,0,0,0.309868802321207,1.70603078984906,15.8544237240817,0,0.802177789880567,0.434021741431704,0,0.32389366601898,0.257575567634187,0,0,0,0,0.411167888021826,0.309706370895104,0,0,0.47296445977717,0,1.29096936716765,0,0.376484679085209,0.272906150057846,0.224723484445085,0.306083892370903,0,0,0,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0.736555271975129,0,0,0.212604299965044,0.628975936525128,0.22465726229299,0.150176892841506,0,0,0.19891667719909,0.365328307529268,0,0,0,0.426730222566507,0.800791974072025,0.574752439954483,0,0,0.569212969109448,0,0,19.8256992868539,10.6496626966492,20.543958612456,4.13090517239049,1.96505381374582,1.23360899399706,1.67186495390678,5.21475626613745,4.73447805734733,1.94826728407911,0.891283655081389,2.06224135232386,3.98761010250518,1.89562704635511,0.640456598628376,1.56071217071854,1.31550323682941,0.829050053357545,1.44901542867526,5.33831627383417,6.95606153033254,5.22677619024884,0.113309342697566,1.53288197440768,3.09264700934367,2.53019692019503,4.45991580053735,2.60433381542567,3.8018081777935,5.42070428679982,4.22355816809581,2.49861453104692,3.31488152861624,2.46338399076314,3.62892137804518,2.67440195783507,3.18613688542158,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0.378139268656271,0,0,4.58426764241994,0,0.741568885568859,0.649094787309367,0.174129737299267,0,1.19245312152671,1.14398982156026,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0.22452937262617,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0.149448680551801,0.352303495931295,0.161872944368132,0.421352420106746,0.204154171254893,0.491337269247072,0.103325781175765,0,0,0,0,0.505008341862199,0.500474079487857,0,0,0.30648779579902,0,0.226864366320042,0,0,0,0.300091096084402,0.103052529238439,0,0,0,0,0,0.0920498986422993,0.969876340912871,0.355009592516614,0,0.339121184620975,0,0,0.286804595389004,1.58565817968474,1.72288698817931,1.2781333715647,0.621966330092223,1.51392510525377,0,0,1.28648187638577,0,0.928735856063958,0,0.354920400119532,0,0.241011029883482,0.330881918197182,0.217879444092406,0.237270619111097,0,0,0,0,0,0.4115740113314,0,57.0397656698239,44.2272247504932,33.0842347741586,0.441463099414651,5.411491295897,0.171567810298526,0.219500570817251,0,0,1.66659201285353,0,1.03993478527958,0,0.115930404975077,0.117408694235822,0,0,0,1.58040879591855,0,0.246217006087397,0,0.297262324577456,0,0.335964256397719,0.141775097242386,0.179117045405697,0,0,0.985326475791887,2.20121085033065,0.621984346622316,1.29707958075265,1.13618190083742,0.190493682876507,0.381988425558278,0,0,0.102827492703324,0,0.285826432630578,0.224262168690721,0,0.36669142910475,0.129271715757778,0,0.845302752556,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0.65147236858747,0,0.791951872933429,0.602878754119172,0,0,1.2162378064119,0.502257091432126,0,0.239624855491583,0,0,0,0,0,3.13838403181876,2.56139988262505,1.50939302401662,1.79680250791648,0,0,0,0,0,0,5.9832291840805,0,1.71768088406796,1.00034104211935,0.542530047399471,0,0.178428988797162,0.473107245101804,0.234282829985426,0,0,0,0,0,0.260650843404249,0,0,1.24060815673732,1.72571360654893,1.38745825144478,0,0,0.30239029332968,0.248107807818777,0,0.280660094433074,0,0,0.321707842287215,0,0,0.355123450626254,0.657017248110473,0,0.116210378459959,2.41718899183244,0,1.38121483403844,0,0,0.131124414959424,0.451199612907412,1.92538342761037,0.784349769176855,0,1.58327443339314,0,0,0.215915916102139,0,0.541892875087706,0.501689773854853,0.509752546090077,0,0.447749509444357,2.85037839639715,3.13722541229881,0.256450125116389,0,0,42.7620198338047,0,0,0.574265537996172,0,0,0.193341436584244,1.07834031980251,0.921022048356777,0.551346289938122,3.86712881525785,1.0151168573996,1.02271952899321,0.890320356467374,0.165284915360978,0,0,0.2023155617111,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0.255897791311334,0.855877976067841,0,0,0.179872457583315,0.823611089208164,0.117812402345686,0,0,0,0.48763373908959,0.243713489631284,0,0.272999822815972,0,0,0,0.66343897524122,0,0,0,0,0,0,0.286822704408103,0,0,0.354761064070598,0.211107635297664,0,0.379473173765715,0.349934720244983,0.192444225451024,0,0,46.2246061813986,0,0,0,0.689170200620878,3.04468565539302,0.764637207142375,2.84823593587081,2.62054953003568,4.52498500394814,2.59389324477087,1.62009431171434,3.17250070517708,0,0,2.45040215981032,0.371606350251437,5.91503773203424,0,0,1.79621434289535,4.0216127727797,1.05836791361941,0.973865820823666,14.8822504400133,2.05411211129873,3.13359791546046,20.0507581672054,0,0.802940375518498,0,1.70338495076131,0,0,0,0.166849141711909,5.47086667125713,0.835218521685727,8.61611792633986,9.73640442513539,0,4.22961015263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| ||
|short_description=p1@ACSM3 | |short_description=p1@ACSM3 | ||
}} | }} |
Latest revision as of 02:30, 25 September 2015
Short description: | p1@ACSM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ACSM3_5end |
Coexpression cluster: | C3542_signet_adenocarcinoma_chronic_liver_Hepatocyte_kidney_gastric |
Association with transcript: | 0bp_to_ENST00000289416, ENST00000440284, NM_005622, NM_202000, uc002dhq.2, uc002dhr.2_5end |
EntrezGene: | ACSM3 |
HGNC: | 10522 |
UniProt: | Q53FZ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.21e-13 | 18 |
alpha-beta T cell | 1.21e-13 | 18 |
immature T cell | 1.21e-13 | 18 |
mature T cell | 1.21e-13 | 18 |
immature alpha-beta T cell | 1.21e-13 | 18 |
lymphoid lineage restricted progenitor cell | 1.50e-12 | 52 |
lymphocyte | 4.10e-12 | 53 |
common lymphoid progenitor | 4.10e-12 | 53 |
T cell | 7.50e-11 | 25 |
pro-T cell | 7.50e-11 | 25 |
CD8-positive, alpha-beta T cell | 1.64e-09 | 11 |
hematopoietic stem cell | 1.21e-08 | 168 |
hematopoietic cell | 1.28e-08 | 177 |
hematopoietic oligopotent progenitor cell | 3.81e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.81e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 2.50e-07 | 15 |
haemolymphatic fluid | 2.50e-07 | 15 |
organism substance | 2.50e-07 | 15 |
subdivision of digestive tract | 7.81e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.84e-08 | 31 |
leukemia | 4.20e-08 | 39 |
hematologic cancer | 4.35e-08 | 51 |
immune system cancer | 4.35e-08 | 51 |