FFCP PHASE1:Hg19::chr17:43861598..43861616,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1394 | |EntrezGene=1394 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2357 | |HGNC=2357 | ||
|TSSclassifier=strong | |||
|UniProt=P34998 | |UniProt=P34998 | ||
|association_with_transcript=-29bp_to_ENST00000314537,ENST00000347197,ENST00000352855,ENST00000398285,NM_001145146,NM_001145147,NM_001145148,NM_004382,uc002ijm.2,uc002ijn.2,uc010dao.2,uc010dap.2,uc010daq.2,uc010dar.2_5end | |association_with_transcript=-29bp_to_ENST00000314537,ENST00000347197,ENST00000352855,ENST00000398285,NM_001145146,NM_001145147,NM_001145148,NM_004382,uc002ijm.2,uc002ijn.2,uc010dao.2,uc010dap.2,uc010daq.2,uc010dar.2_5end | ||
|cluster_id=chr17:43861598..43861616,+ | |||
|coexpression_cluster_id=C2412 | |coexpression_cluster_id=C2412 | ||
|description=CAGE_peak_4_at_CRHR1_5end | |description=CAGE_peak_4_at_CRHR1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!6.62e-08!5;CL:0002319!2.54e-07!25 | |ontology_enrichment_celltype=CL:0002322!6.62e-08!5;CL:0002319!2.54e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000453;1.24e-21;5!CL:0000540;2.62e-18;6!CL:0000404;2.62e-18;6!CL:0000990;2.65e-12;8!CL:0000451;3.61e-10;10!CL:0002319;3.06e-07;25 | |ontology_enrichment_celltype_v019=CL:0000453;1.24e-21;5!CL:0000540;2.62e-18;6!CL:0000404;2.62e-18;6!CL:0000990;2.65e-12;8!CL:0000451;3.61e-10;10!CL:0002319;3.06e-07;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000453,8.40e-22,5;CL:0000540,2.78e-18,6;CL:0000031,2.78e-18,6;CL:0000404,2.78e-18,6;CL:0000047,7.18e-14,8;CL:0000990,2.15e-12,8;CL:0000451,3.04e-10,10;CL:0002319,3.19e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.64e-36;3!CL:0000031;2.62e-18;6 | |ontology_enrichment_development_v019=UBERON:0006215;2.64e-36;3!CL:0000031;2.62e-18;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.28e-41!82;UBERON:0005743!3.00e-41!86;UBERON:0000073!1.70e-38!94;UBERON:0001016!1.70e-38!94;UBERON:0000955!4.04e-38!69;UBERON:0006238!4.04e-38!69;UBERON:0001049!7.25e-38!57;UBERON:0005068!7.25e-38!57;UBERON:0006241!7.25e-38!57;UBERON:0007135!7.25e-38!57;UBERON:0002616!6.01e-34!59;UBERON:0003075!1.36e-32!86;UBERON:0007284!1.36e-32!86;UBERON:0002346!1.75e-32!90;UBERON:0002780!1.90e-30!41;UBERON:0001890!1.90e-30!41;UBERON:0006240!1.90e-30!41;UBERON:0003080!1.44e-29!42;UBERON:0001893!5.31e-29!34;UBERON:0002791!4.64e-27!33;UBERON:0001869!1.95e-25!32;UBERON:0002619!2.30e-24!22;UBERON:0000956!6.69e-24!25;UBERON:0000203!6.69e-24!25;UBERON:0003056!1.08e-23!61;UBERON:0001950!1.22e-23!20;UBERON:0002020!1.39e-23!34;UBERON:0003528!1.39e-23!34;UBERON:0000924!3.62e-22!173;UBERON:0006601!3.62e-22!173;UBERON:0004121!7.79e-22!169;UBERON:0000033!7.65e-21!123;UBERON:0000153!1.11e-20!129;UBERON:0007811!1.11e-20!129;UBERON:0007023!8.60e-18!115;UBERON:0001871!1.28e-10!7;UBERON:0000200!3.57e-10!6;UBERON:0004733!2.14e-09!12;UBERON:0002028!2.14e-09!12;UBERON:0007277!2.14e-09!12;UBERON:0003076!2.43e-09!15;UBERON:0003057!2.43e-09!15;UBERON:0004732!1.39e-08!13;UBERON:0002021!1.46e-08!5;UBERON:0002771!7.74e-08!3;UBERON:0002037!2.46e-07!6;UBERON:0006215!2.46e-07!6;UBERON:0002680!3.52e-07!9;UBERON:0001895!3.52e-07!9;UBERON:0010092!3.52e-07!9;UBERON:0000025!5.28e-07!194;UBERON:0000064!8.74e-07!219 | |ontology_enrichment_uberon=UBERON:0001017!1.28e-41!82;UBERON:0005743!3.00e-41!86;UBERON:0000073!1.70e-38!94;UBERON:0001016!1.70e-38!94;UBERON:0000955!4.04e-38!69;UBERON:0006238!4.04e-38!69;UBERON:0001049!7.25e-38!57;UBERON:0005068!7.25e-38!57;UBERON:0006241!7.25e-38!57;UBERON:0007135!7.25e-38!57;UBERON:0002616!6.01e-34!59;UBERON:0003075!1.36e-32!86;UBERON:0007284!1.36e-32!86;UBERON:0002346!1.75e-32!90;UBERON:0002780!1.90e-30!41;UBERON:0001890!1.90e-30!41;UBERON:0006240!1.90e-30!41;UBERON:0003080!1.44e-29!42;UBERON:0001893!5.31e-29!34;UBERON:0002791!4.64e-27!33;UBERON:0001869!1.95e-25!32;UBERON:0002619!2.30e-24!22;UBERON:0000956!6.69e-24!25;UBERON:0000203!6.69e-24!25;UBERON:0003056!1.08e-23!61;UBERON:0001950!1.22e-23!20;UBERON:0002020!1.39e-23!34;UBERON:0003528!1.39e-23!34;UBERON:0000924!3.62e-22!173;UBERON:0006601!3.62e-22!173;UBERON:0004121!7.79e-22!169;UBERON:0000033!7.65e-21!123;UBERON:0000153!1.11e-20!129;UBERON:0007811!1.11e-20!129;UBERON:0007023!8.60e-18!115;UBERON:0001871!1.28e-10!7;UBERON:0000200!3.57e-10!6;UBERON:0004733!2.14e-09!12;UBERON:0002028!2.14e-09!12;UBERON:0007277!2.14e-09!12;UBERON:0003076!2.43e-09!15;UBERON:0003057!2.43e-09!15;UBERON:0004732!1.39e-08!13;UBERON:0002021!1.46e-08!5;UBERON:0002771!7.74e-08!3;UBERON:0002037!2.46e-07!6;UBERON:0006215!2.46e-07!6;UBERON:0002680!3.52e-07!9;UBERON:0001895!3.52e-07!9;UBERON:0010092!3.52e-07!9;UBERON:0000025!5.28e-07!194;UBERON:0000064!8.74e-07!219 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.63e-18;6!UBERON:0002680;1.51e-12;9!UBERON:0001895;1.51e-12;9!UBERON:0004733;1.51e-09;12!UBERON:0002028;1.51e-09;12!UBERON:0004732;7.46e-09;13 | |ontology_enrichment_uberon_v019=UBERON:0002037;1.63e-18;6!UBERON:0002680;1.51e-12;9!UBERON:0001895;1.51e-12;9!UBERON:0004733;1.51e-09;12!UBERON:0002028;1.51e-09;12!UBERON:0004732;7.46e-09;13 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.54e-18,6;UBERON:0006215,1.54e-18,6;UBERON:0001016,5.24e-14,89;UBERON:0001017,7.63e-13,81;UBERON:0002680,1.45e-12,9;UBERON:0001895,1.45e-12,9;UBERON:0010092,1.45e-12,9;UBERON:0004733,1.46e-09,12;UBERON:0002028,1.46e-09,12;UBERON:0007277,1.46e-09,12;UBERON:0004732,7.27e-09,13;UBERON:0003076,9.50e-08,15;UBERON:0003057,9.50e-08,15;UBERON:0000955,1.42e-07,68;UBERON:0006238,1.42e-07,68;UBERON:0000073,1.94e-07,53;UBERON:0002616,1.94e-07,53;UBERON:0001049,5.02e-07,56;UBERON:0005068,5.02e-07,56;UBERON:0006241,5.02e-07,56;UBERON:0007135,5.02e-07,56;UBERON:0011216,5.96e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31986643833309,1.17261385734044,3.82763250991898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.844016498463076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.556608588971108,0,0,0,0,0,0,0,1.72371686620732,0,0.173624994933292,0,0,4.5774520895125,2.87506075821184,2.06883333267483,0.658156191461918,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.937057782901357,0,0,0,0,0,1.22429104652196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.569797163602908,0,0,0,0,0,0.229073192331831,0,0,0,0,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.728994679896296,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.3755727921195,0,0.221858103073705,0.0620964029413835,0.138348634936231,0,0,0,0,0.936669811613763,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,1.55888247071511,1.86010776438708,3.27130788511688,0,0,0,0,0,0,0,0,0,0,5.37156359475337,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0.385375350578757,0,0.478901577171454,0.615349092722265,1.00828678488687,0.414943514785307,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.742913430802341,0,0,0.507326481551255,1.09394961803644,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.611727596791485,0.328863867814245,0,0,0.078493092850514,0,0,0,0.215927591218621,0,0.142953088353313,2.05417695252545,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0.994753875806841,0.713520544665411,0,1.20934568419972,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.430018749454354,0,0.135982980381829,1.30905207102113,0,0,0,0,0,0,0,0,0.26721740526556,0,0.250707539292375,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31986643833309,1.17261385734044,3.82763250991898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.844016498463076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.556608588971108,0,0,0,0,0,0,0,1.72371686620732,0,0.173624994933292,0,0,4.5774520895125,2.87506075821184,2.06883333267483,0.658156191461918,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.937057782901357,0,0,0,0,0,1.22429104652196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.569797163602908,0,0,0,0,0,0.229073192331831,0,0,0,0,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.728994679896296,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.3755727921195,0,0.221858103073705,0.0620964029413835,0.138348634936231,0,0,0,0,0.936669811613763,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,1.55888247071511,1.86010776438708,3.27130788511688,0,0,0,0,0,0,0,0,0,0,5.37156359475337,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0.385375350578757,0,0.478901577171454,0.615349092722265,1.00828678488687,0.414943514785307,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.742913430802341,0,0,0.507326481551255,1.09394961803644,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.611727596791485,0.328863867814245,0,0,0.078493092850514,0,0,0,0.215927591218621,0,0.142953088353313,2.05417695252545,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0.994753875806841,0.713520544665411,0,1.20934568419972,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.430018749454354,0,0.135982980381829,1.30905207102113,0,0,0,0,0,0,0,0,0.26721740526556,0,0.250707539292375,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p4@CRHR1 | |short_description=p4@CRHR1 | ||
}} | }} |
Latest revision as of 02:03, 25 September 2015
Short description: | p4@CRHR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CRHR1_5end |
Coexpression cluster: | C2412_neuroblastoma_cerebellum_Neurons_migratory_thalamus_parietal_amygdala |
Association with transcript: | -29bp_to_ENST00000314537, ENST00000347197, ENST00000352855, ENST00000398285, NM_001145146, NM_001145147, NM_001145148, NM_004382, uc002ijm.2, uc002ijn.2, uc010dao.2, uc010dap.2, uc010daq.2, uc010dar.2_5end |
EntrezGene: | CRHR1 |
HGNC: | 2357 |
UniProt: | P34998 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 8.40e-22 | 5 |
neuron | 2.78e-18 | 6 |
neuroblast | 2.78e-18 | 6 |
electrically signaling cell | 2.78e-18 | 6 |
neuronal stem cell | 7.18e-14 | 8 |
conventional dendritic cell | 2.15e-12 | 8 |
dendritic cell | 3.04e-10 | 10 |
neural cell | 3.19e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.54e-18 | 6 |
rhombic lip | 1.54e-18 | 6 |
nervous system | 5.24e-14 | 89 |
central nervous system | 7.63e-13 | 81 |
regional part of metencephalon | 1.45e-12 | 9 |
metencephalon | 1.45e-12 | 9 |
future metencephalon | 1.45e-12 | 9 |
segmental subdivision of hindbrain | 1.46e-09 | 12 |
hindbrain | 1.46e-09 | 12 |
presumptive hindbrain | 1.46e-09 | 12 |
segmental subdivision of nervous system | 7.27e-09 | 13 |
posterior neural tube | 9.50e-08 | 15 |
chordal neural plate | 9.50e-08 | 15 |
brain | 1.42e-07 | 68 |
future brain | 1.42e-07 | 68 |
regional part of nervous system | 1.94e-07 | 53 |
regional part of brain | 1.94e-07 | 53 |
neural tube | 5.02e-07 | 56 |
neural rod | 5.02e-07 | 56 |
future spinal cord | 5.02e-07 | 56 |
neural keel | 5.02e-07 | 56 |
organ system subdivision | 5.96e-07 | 223 |