FFCP PHASE1:Hg19::chr19:8567505..8567540,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84106 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30091 | |||
|TSSclassifier=strong | |||
|UniProt=Q96QH2 | |||
|association_with_transcript=0bp_to_ENST00000423345,NM_032152_5end | |||
|cluster_id=chr19:8567505..8567540,- | |||
|coexpression_cluster_id=C3836 | |||
|description=CAGE_peak_1_at_PRAM1_5end | |||
|id=chr19:8567505..8567540,- | |||
|ontology_enrichment_celltype=CL:0000763!3.59e-50!112;CL:0000049!3.59e-50!112;CL:0000037!1.93e-47!172;CL:0000566!1.93e-47!172;CL:0000766!1.22e-46!76;CL:0002032!8.68e-44!165;CL:0000837!8.68e-44!165;CL:0000988!3.45e-42!182;CL:0002194!4.97e-41!63;CL:0000576!4.97e-41!63;CL:0000040!4.97e-41!63;CL:0000559!4.97e-41!63;CL:0002009!5.92e-39!65;CL:0000557!2.88e-38!71;CL:0000839!2.60e-37!70;CL:0000738!8.34e-37!140;CL:0002057!1.32e-36!42;CL:0002087!2.27e-33!119;CL:0000860!8.71e-33!45;CL:0002031!4.98e-29!124;CL:0002393!9.32e-10!9;CL:0002397!9.32e-10!9;CL:0000094!1.05e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.04e-29;39!CL:0000234;2.04e-29;39!CL:0000860;2.39e-29;33!CL:0002057;2.39e-29;33!CL:0000576;2.95e-29;48!CL:0000766;5.76e-23;69!CL:0000763;2.04e-18;100!CL:0000094;8.63e-10;8!CL:0002087;2.23e-09;104!CL:0000738;1.26e-08;136!CL:0002393;6.19e-08;6!CL:0002397;6.19e-08;6!CL:0000988;6.85e-08;177!CL:0000235;5.00e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,8.39e-57,108;CL:0000049,8.39e-57,108;CL:0000766,2.51e-55,72;CL:0002194,1.25e-52,59;CL:0000576,1.25e-52,59;CL:0000040,1.25e-52,59;CL:0000559,1.25e-52,59;CL:0002009,4.12e-50,61;CL:0000473,9.84e-48,48;CL:0000234,9.84e-48,48;CL:0000557,1.28e-45,67;CL:0000037,1.69e-45,168;CL:0000839,1.69e-44,66;CL:0000860,5.69e-42,42;CL:0002057,5.69e-42,42;CL:0002032,1.86e-41,161;CL:0000837,1.86e-41,161;CL:0000988,3.41e-41,177;CL:0000738,1.86e-35,136;CL:0002087,3.62e-33,115;CL:0002031,8.35e-27,120;CL:0002393,5.28e-11,9;CL:0002397,5.28e-11,9;CL:0000094,8.61e-10,8;CL:0000235,5.06e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;4.03e-30;42!CL:0000049;2.05e-17;108 | |||
|ontology_enrichment_disease=DOID:8692!6.78e-11!31;DOID:1240!5.68e-09!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.78e-10;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.23e-10,31;DOID:1240,1.33e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.26e-43!115;UBERON:0002390!1.54e-41!102;UBERON:0003061!1.54e-41!102;UBERON:0002193!5.10e-37!112;UBERON:0002371!2.84e-33!80;UBERON:0001474!4.61e-29!86;UBERON:0002405!3.41e-24!115;UBERON:0004765!1.65e-22!101;UBERON:0001434!1.65e-22!101;UBERON:0001049!1.98e-18!57;UBERON:0005068!1.98e-18!57;UBERON:0006241!1.98e-18!57;UBERON:0007135!1.98e-18!57;UBERON:0003080!2.18e-14!42;UBERON:0002780!3.52e-14!41;UBERON:0001890!3.52e-14!41;UBERON:0006240!3.52e-14!41;UBERON:0002616!3.70e-14!59;UBERON:0002020!1.20e-11!34;UBERON:0003528!1.20e-11!34;UBERON:0001893!1.48e-11!34;UBERON:0000955!3.44e-11!69;UBERON:0006238!3.44e-11!69;UBERON:0002791!3.59e-11!33;UBERON:0001017!4.97e-11!82;UBERON:0003075!5.89e-11!86;UBERON:0007284!5.89e-11!86;UBERON:0005743!1.95e-10!86;UBERON:0001869!1.99e-10!32;UBERON:0002346!3.29e-10!90;UBERON:0003081!4.17e-10!216;UBERON:0002619!5.02e-09!22;UBERON:0000073!5.64e-09!94;UBERON:0001016!5.64e-09!94;UBERON:0001950!5.63e-08!20;UBERON:0000178!6.52e-08!15;UBERON:0000179!6.52e-08!15;UBERON:0000463!6.52e-08!15;UBERON:0003056!1.44e-07!61;UBERON:0002204!2.04e-07!167;UBERON:0000479!2.24e-07!787;UBERON:0000956!2.93e-07!25;UBERON:0000203!2.93e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.62e-11;41!UBERON:0001890;3.62e-11;41!UBERON:0001893;3.94e-11;34!UBERON:0003528;1.51e-10;34!UBERON:0002020;1.51e-10;34!UBERON:0002791;1.96e-10;32!UBERON:0007023;2.20e-10;114!UBERON:0001869;3.01e-10;32!UBERON:0000073;3.20e-10;53!UBERON:0002616;3.20e-10;53!UBERON:0002619;1.74e-09;22!UBERON:0000178;3.70e-09;15!UBERON:0000179;3.70e-09;15!UBERON:0000463;3.70e-09;15!UBERON:0001950;2.65e-08;20!UBERON:0000956;9.18e-08;25!UBERON:0000203;9.18e-08;25!UBERON:0000125;4.71e-07;9!UBERON:0002308;4.71e-07;9!UBERON:0002420;9.24e-07;9!UBERON:0007245;9.24e-07;9!UBERON:0010009;9.24e-07;9!UBERON:0010011;9.24e-07;9!UBERON:0000454;9.24e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.48e-48,98;UBERON:0003061,5.48e-48,98;UBERON:0002193,3.09e-43,108;UBERON:0002371,4.64e-39,76;UBERON:0007023,1.33e-38,114;UBERON:0002405,1.08e-34,93;UBERON:0001474,1.93e-34,82;UBERON:0004765,2.75e-29,90;UBERON:0001434,4.45e-25,100;UBERON:0001049,1.04e-19,56;UBERON:0005068,1.04e-19,56;UBERON:0006241,1.04e-19,56;UBERON:0007135,1.04e-19,56;UBERON:0000073,6.29e-18,53;UBERON:0002616,6.29e-18,53;UBERON:0003081,5.48e-15,203;UBERON:0002780,7.78e-15,41;UBERON:0001890,7.78e-15,41;UBERON:0003080,7.78e-15,41;UBERON:0006240,7.78e-15,41;UBERON:0003528,8.95e-13,34;UBERON:0002020,8.95e-13,34;UBERON:0001893,1.13e-12,34;UBERON:0001017,1.37e-12,81;UBERON:0000955,1.98e-12,68;UBERON:0006238,1.98e-12,68;UBERON:0003075,1.05e-11,82;UBERON:0007284,1.05e-11,82;UBERON:0002791,1.41e-11,32;UBERON:0001869,2.20e-11,32;UBERON:0001016,1.32e-10,89;UBERON:0002346,1.54e-10,86;UBERON:0002619,1.67e-09,22;UBERON:0000178,3.71e-09,15;UBERON:0000179,3.71e-09,15;UBERON:0000463,3.71e-09,15;UBERON:0001950,2.58e-08,20;UBERON:0002204,3.24e-08,167;UBERON:0003056,3.58e-08,61;UBERON:0000479,5.94e-08,773;UBERON:0000956,8.89e-08,25;UBERON:0000203,8.89e-08,25;UBERON:0000125,4.63e-07,9;UBERON:0002308,4.63e-07,9;UBERON:0002420,8.62e-07,9;UBERON:0007245,8.62e-07,9;UBERON:0010009,8.62e-07,9;UBERON:0010011,8.62e-07,9;UBERON:0000454,8.62e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,167.179817660784,66.0186564727206,93.1993062362777,0,0,0,0,0,50.2056751262589,153.45672816333,224.609781166559,132.159620265954,22.6154628982324,33.3610475999549,31.4242192513708,97.7076164598675,89.178722710559,104.553730371949,74.6097208467248,49.3401465626191,46.7656620051606,67.3200198033832,69.4195514693863,34.2899233338449,82.0494720153152,87.1404322838165,81.2558919566051,81.885417701033,52.1250746610485,30.5623938845315,63.3593657207768,52.9532894675554,68.4090724604974,73.226988641451,65.6235433575169,61.376364076708,40.6292934080018,45.9582031999823,32.3867569477699,100.499466102697,102.210652010359,59.0753657597917,36.9293696606355,58.5561441220228,33.2285506812929,96.1211552719335,110.129027381893,72.5418913458981,178.939509416367,129.152127843695,299.110316843266,97.1893456157658,98.8615885679478,98.0906505716084,0,0.546138611262131,0,2.98711155796555,0.400395987036012,1.72425731986345,1.32208974556972,0,0.569212969109448,2.93618594685469,0.382273228125229,10.5737062863221,11.2101712596307,38.4540763771613,0,0.393010762749165,1.43921049299656,0,0,0,0,0,0,0,0,0,0.130059347559878,0.493313713811028,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0,1.59282707162048,1.30216690771284,0.950452044448374,8.2816315492775,4.8634912238679,2.49861453104692,7.34009481336452,2.46338399076314,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0.263504357079378,7.07287007687648,0,0,21.0955805875544,23.8557740099996,23.0017271697637,7.15471872916026,5.14795419702115,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,77.7504462872773,65.9226449052153,0,0,0,0,0,1.77334191099179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91413608338813,3.54473944008842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.8073897122255,95.7077444419482,95.2725750270748,0,0,0,0,0,0,0,0.616339038092582,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,65.6768415462429,35.1579964002489,86.441915188043,0,0,0,0,0,0,0.336255431980582,9.45747648969251,1.07813787429759,6.54549485026717,0,0,0,1.00509759200609,0,211.219980753105,143.597500417932,149.189584836973,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,106.278765427164,91.8942495487308,81.6465817196349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.91555844261345,0,0,0,0,0,0,0,0,0,0,0,0.255679882248303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0.422215270595328,0,0,0,0,0.670302275535787,0,3.76575203107117,0,0,0,0,45.6702848308952,45.1135952214001,75.1934287069895,50.2669046215935,64.1725146014463,66.1442777416572,39.4222949183824,53.9325119880104,0,0.962479855263359,0,0,0,0,0.956557636372934,9.18065108590956,22.7891390457516,31.7510374085824,20.451182237297,35.6612416204093,49.0704559921363,112.026125477712,162.912410108544,8.12600533447696,2.08764497634809,32.6915525649497,123.495408930195,142.898223418398,20.5851312086667,14.9862992287919,22.5246341311076,99.2571524642365,0,0,0,33.6402687677798,18.3283106614204,0,7.47191714286659,0,0,0,0,1.78178808499583,0,2.98244294329889,13.0822557261777,0,0,0,2.19172787076177,1.10513566212459,0,0,0,0,0,0,5.11572370226872,1.57829449019094,81.4242513979595,0,6.78532922266653,5.75162208603478,0,0,0,0.724999575434793,0,0,0,0,0,0,5.31444831488303,6.99459344027366,6.10326945268333,3.64911557773041,1.18219047581419,3.29078095730959,0,0,1.15425387755696,0,0,0,0,0.31900115973192,0,0.533034776018635,4.08773192782946,15.6980256395025,0.997270091400938,0.225595660617181,0,0,0,1.11255605286265,0,0,0,0,0.995261931078505,1.23840590304675,2.4441205797345,0,0,0,24.6688146709278,0.802577647298789,4.68528891450678,0,0,0,0.394584402849391,1.20990716048664,1.22429104652196,14.2801669960383,0,0,0,0,0,1.19472429772959,0,0,0,0,0,2.79562669187248,0,0,0,0,0.775912131907355,0,0.90392296312213,0,0,4.49506651286739,0,0,2.98834192635094,0,0,0,0,0,0,0,0,0,0,0,7.80546375322726,28.8870349462105,152.018439799697,0,0,1.39641200636127,0.458320848023367,1.43574604915363,0.599037001496973,0,1.33902874465124,6.24806294126554,0,0,0,0,0,0,0,11.9284453471395,13.8927474233807,0,0,0,0,0,6.25720433577654,0,1.73372556058236,3.93409411012486,0,0,0,0.714695326373367,3.97255182219259,0,0,0,0,0,0.082092520749339,0,0,1.90517903781507,6.62534444561107,12.4111638107089,15.0745165986667,0,0,20.289608387862,4.24451623769098,27.7540167082621,17.3658107634183,0,0,0,0,0,0,0,0,0,4.51497180137264,9.51451073369399,5.73409195690071,19.8563002250966,23.161958297136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.95460740292461,0,0,0,0,0,0,0,29.0201504768063,0.172214979660816,0,0,0,2.48830904013189,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,6.16600560926011,7.08482881627925,15.3248504694865,3.69209455633359,0.252071696221718,4.70269316756682,6.45902582527404,4.28308260777463,0,0,0,0,0,0,0,3.53488543241509,0,0.781514011233092,0,0,0,3.71456715401171,3.12431239445539,7.64741147054381,5.77083872764552,0,2.19303106742873,1.48863353516788,0,0,1.07140367175657,4.37168838884471,0.606965604236632,1.13831095675649,3.28198769601764,0,0,11.8267335379687,3.94636641377094,0,0,2.8257513426185,7.07020154622009,0,0,0.215927591218621,0,4.43154573895269,0,0,0,0,0,0,0,1.72090943528111,0,0.0852134047591577,0,0,0,0,0,0,0,0,1.02662806856247,0,0.485710993059139,0,0,0,0,0,0,1.389134845943,3.93407208907123,0,0.980593287015622,0,14.9194435007358,49.6067488546234,2.5359343655004,0,14.8494590408169,30.1018336836605,0,0,0,0,2.19100916473955,2.2936464170227,20.640899973809,0,5.575302195655,0,1.5870805215462,0,0,0,0,0,0.506794004045748,0,0,0,0,0.833565680400634,0.535928260312357,13.2667110313405,20.5831661765171,8.74259325794022,0.714193294391221,2.51896748360424,9.12498300149111,0,1.0820016907288,0.606351566874658,0,0.684466602170562,1.88585748440845,5.1639987882727,0.332660356546013,0,0,0,0,0,1.71138021856013,1.62758471326295,1.99727032255654,3.42165449104745,0 | |||
|short_description=p1@PRAM1 | |||
}} |
Latest revision as of 00:54, 25 September 2015
Short description: | p1@PRAM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRAM1_5end |
Coexpression cluster: | C3836_CD14_Neutrophils_acute_Basophils_granulocyte_Peripheral_CD14CD16 |
Association with transcript: | 0bp_to_ENST00000423345, NM_032152_5end |
EntrezGene: | PRAM1 |
HGNC: | 30091 |
UniProt: | Q96QH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 8.39e-57 | 108 |
common myeloid progenitor | 8.39e-57 | 108 |
myeloid leukocyte | 2.51e-55 | 72 |
monopoietic cell | 1.25e-52 | 59 |
monocyte | 1.25e-52 | 59 |
monoblast | 1.25e-52 | 59 |
promonocyte | 1.25e-52 | 59 |
macrophage dendritic cell progenitor | 4.12e-50 | 61 |
defensive cell | 9.84e-48 | 48 |
phagocyte | 9.84e-48 | 48 |
granulocyte monocyte progenitor cell | 1.28e-45 | 67 |
hematopoietic stem cell | 1.69e-45 | 168 |
myeloid lineage restricted progenitor cell | 1.69e-44 | 66 |
classical monocyte | 5.69e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.69e-42 | 42 |
hematopoietic oligopotent progenitor cell | 1.86e-41 | 161 |
hematopoietic multipotent progenitor cell | 1.86e-41 | 161 |
hematopoietic cell | 3.41e-41 | 177 |
leukocyte | 1.86e-35 | 136 |
nongranular leukocyte | 3.62e-33 | 115 |
hematopoietic lineage restricted progenitor cell | 8.35e-27 | 120 |
intermediate monocyte | 5.28e-11 | 9 |
CD14-positive, CD16-positive monocyte | 5.28e-11 | 9 |
granulocyte | 8.61e-10 | 8 |
macrophage | 5.06e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.23e-10 | 31 |
leukemia | 1.33e-07 | 39 |