FFCP PHASE1:Hg19::chr14:64522718..64522734,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23224 | |EntrezGene=23224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=17084 | |HGNC=17084 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=72bp_to_uc010apw.1_5end | |association_with_transcript=72bp_to_uc010apw.1_5end | ||
|cluster_id=chr14:64522718..64522734,+ | |||
|coexpression_cluster_id=C2307 | |||
|description=CAGE_peak_4_at_SYNE2_5end | |description=CAGE_peak_4_at_SYNE2_5end | ||
|id=chr14:64522718..64522734,+ | |id=chr14:64522718..64522734,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000624;2.88e-17;6!CL:0000775;3.42e-16;3!CL:0000623;1.42e-15;3!CL:0000791;2.82e-15;18!CL:0000789;2.82e-15;18!CL:0002419;2.82e-15;18!CL:0000313;8.34e-13;1!CL:0000084;5.55e-11;25!CL:0000159;4.96e-07;2!CL:0000815;8.76e-07;2!CL:0000792;8.76e-07;2!CL:0002677;8.76e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.81e-17,6;CL:0000775,3.69e-16,3;CL:0000623,1.22e-15,3;CL:0000825,1.22e-15,3;CL:0000791,2.79e-15,18;CL:0000789,2.79e-15,18;CL:0002420,2.79e-15,18;CL:0002419,2.79e-15,18;CL:0000790,2.79e-15,18;CL:0000313,7.89e-13,1;CL:0000838,1.07e-12,52;CL:0000542,1.92e-12,53;CL:0000051,1.92e-12,53;CL:0000084,5.50e-11,25;CL:0000827,5.50e-11,25;CL:0000159,4.83e-07,2;CL:0000815,6.80e-07,2;CL:0000792,6.80e-07,2;CL:0002677,6.80e-07,2;CL:0000738,9.30e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;2.82e-15;18!UBERON:0004874;2.60e-12;1 | |||
|ontology_enrichment_disease=DOID:305!2.00e-10!106;DOID:0050687!6.10e-10!143;DOID:162!3.24e-08!235;DOID:14566!1.32e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:2152;8.34e-13;1!DOID:4468;8.76e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,7.89e-13,1;DOID:4468,7.61e-07,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;8.34e-13;1!UBERON:0000989;2.60e-12;1!UBERON:0008811;2.60e-12;1!UBERON:0004909;4.96e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,7.89e-13,1;UBERON:0000989,2.75e-12,1;UBERON:0008811,2.75e-12,1;UBERON:0006258,2.75e-12,1;UBERON:0005876,2.75e-12,1;UBERON:0004874,2.75e-12,1;UBERON:0004909,4.83e-07,2 | |||
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| ||
|short_description=p4@SYNE2 | |short_description=p4@SYNE2 | ||
}} | }} |
Latest revision as of 00:46, 25 September 2015
Short description: | p4@SYNE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SYNE2_5end |
Coexpression cluster: | C2307_Neutrophils_serous_CD8_Natural_CD4_thyroid_carcinosarcoma |
Association with transcript: | 72bp_to_uc010apw.1_5end |
EntrezGene: | SYNE2 |
HGNC: | 17084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 2.81e-17 | 6 |
neutrophil | 3.69e-16 | 3 |
natural killer cell | 1.22e-15 | 3 |
pro-NK cell | 1.22e-15 | 3 |
mature alpha-beta T cell | 2.79e-15 | 18 |
alpha-beta T cell | 2.79e-15 | 18 |
immature T cell | 2.79e-15 | 18 |
mature T cell | 2.79e-15 | 18 |
immature alpha-beta T cell | 2.79e-15 | 18 |
serous secreting cell | 7.89e-13 | 1 |
lymphoid lineage restricted progenitor cell | 1.07e-12 | 52 |
lymphocyte | 1.92e-12 | 53 |
common lymphoid progenitor | 1.92e-12 | 53 |
T cell | 5.50e-11 | 25 |
pro-T cell | 5.50e-11 | 25 |
seromucus secreting cell | 4.83e-07 | 2 |
regulatory T cell | 6.80e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.80e-07 | 2 |
naive regulatory T cell | 6.80e-07 | 2 |
leukocyte | 9.30e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 7.89e-13 | 1 |
penis | 2.75e-12 | 1 |
intromittent organ | 2.75e-12 | 1 |
lateral plate mesenchyme | 2.75e-12 | 1 |
undifferentiated genital tubercle | 2.75e-12 | 1 |
somatopleure | 2.75e-12 | 1 |
epithelium of gonad | 4.83e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 7.89e-13 | 1 |
clear cell adenocarcinoma | 7.61e-07 | 2 |