FFCP PHASE1:Hg19::chrX:38429930..38429939,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7102 | |EntrezGene=7102 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11854 | |HGNC=11854 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000488893_5end | |association_with_transcript=0bp_to_ENST00000488893_5end | ||
|cluster_id=chrX:38429930..38429939,+ | |||
|coexpression_cluster_id=C125 | |coexpression_cluster_id=C125 | ||
|description=CAGE_peak_12_at_TSPAN7_5end | |description=CAGE_peak_12_at_TSPAN7_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000319!6.59e-08!1 | |ontology_enrichment_celltype=CL:0000319!6.59e-08!1 | ||
|ontology_enrichment_celltype_v019=CL:0000319;1.46e-50;1!CL:0000159;4.32e-26;2!CL:0000082;1.81e-11;19 | |ontology_enrichment_celltype_v019=CL:0000319;1.46e-50;1!CL:0000159;4.32e-26;2!CL:0000082;1.81e-11;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000319,1.46e-50,1;CL:0000159,4.32e-26,2;CL:0000082,1.72e-11,19 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.06e-15;30!UBERON:0008947;7.15e-08;29 | |ontology_enrichment_development_v019=UBERON:0001041;1.06e-15;30!UBERON:0008947;7.15e-08;29 | ||
|ontology_enrichment_disease=DOID:3030!6.59e-08!1;DOID:3151!1.42e-07!1;DOID:3149!1.42e-07!1 | |ontology_enrichment_disease=DOID:3030!6.59e-08!1;DOID:3151!1.42e-07!1;DOID:3149!1.42e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3030;1.46e-50;1!DOID:4556;9.45e-18;3!DOID:1324;3.15e-14;15!DOID:0050615;2.07e-13;16!DOID:3908;3.26e-11;5!DOID:3905;8.37e-07;9 | |ontology_enrichment_disease_v019=DOID:3030;1.46e-50;1!DOID:4556;9.45e-18;3!DOID:1324;3.15e-14;15!DOID:0050615;2.07e-13;16!DOID:3908;3.26e-11;5!DOID:3905;8.37e-07;9 | ||
|ontology_enrichment_disease_v019_2=DOID:3030,1.46e-50,1;DOID:4556,9.46e-18,3;DOID:1324,2.94e-14,15;DOID:0050615,1.95e-13,16;DOID:3908,3.26e-11,5;DOID:305,2.62e-08,106;DOID:3905,8.37e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0002780!2.55e-18!41;UBERON:0001890!2.55e-18!41;UBERON:0006240!2.55e-18!41;UBERON:0003080!7.69e-18!42;UBERON:0000369!1.99e-14!4;UBERON:0002435!1.99e-14!4;UBERON:0000204!1.99e-14!4;UBERON:0010082!1.99e-14!4;UBERON:0001869!2.91e-13!32;UBERON:0002791!7.89e-13!33;UBERON:0001049!1.23e-12!57;UBERON:0005068!1.23e-12!57;UBERON:0006241!1.23e-12!57;UBERON:0007135!1.23e-12!57;UBERON:0002020!2.02e-12!34;UBERON:0003528!2.02e-12!34;UBERON:0001893!2.02e-12!34;UBERON:0002616!3.85e-12!59;UBERON:0000955!8.35e-12!69;UBERON:0006238!8.35e-12!69;UBERON:0003056!1.12e-11!61;UBERON:0001017!2.85e-11!82;UBERON:0002420!4.67e-11!9;UBERON:0007245!4.67e-11!9;UBERON:0010009!4.67e-11!9;UBERON:0010011!4.67e-11!9;UBERON:0000454!4.67e-11!9;UBERON:0005743!1.24e-10!86;UBERON:0000033!2.02e-10!123;UBERON:0004121!7.45e-10!169;UBERON:0000153!8.69e-10!129;UBERON:0007811!8.69e-10!129;UBERON:0001950!1.10e-09!20;UBERON:0000924!1.54e-09!173;UBERON:0006601!1.54e-09!173;UBERON:0005383!2.06e-09!3;UBERON:0005382!2.06e-09!3;UBERON:0000073!2.15e-09!94;UBERON:0001016!2.15e-09!94;UBERON:0003075!3.83e-09!86;UBERON:0007284!3.83e-09!86;UBERON:0002619!8.53e-09!22;UBERON:0007023!1.16e-08!115;UBERON:0002346!1.24e-08!90;UBERON:0001894!1.88e-08!7;UBERON:0009663!1.88e-08!7;UBERON:0006222!1.88e-08!7;UBERON:0001874!9.10e-08!1;UBERON:0000956!1.02e-07!25;UBERON:0000203!1.02e-07!25;UBERON:0004111!1.06e-07!241;UBERON:0002372!4.09e-07!1;UBERON:0001961!4.09e-07!1;UBERON:0001744!4.09e-07!1;UBERON:0001735!4.09e-07!1;UBERON:0001882!4.34e-07!1;UBERON:0005403!4.34e-07!1;UBERON:0003343!4.49e-07!4;UBERON:0004785!4.49e-07!4;UBERON:0002022!4.90e-07!1 | |ontology_enrichment_uberon=UBERON:0002780!2.55e-18!41;UBERON:0001890!2.55e-18!41;UBERON:0006240!2.55e-18!41;UBERON:0003080!7.69e-18!42;UBERON:0000369!1.99e-14!4;UBERON:0002435!1.99e-14!4;UBERON:0000204!1.99e-14!4;UBERON:0010082!1.99e-14!4;UBERON:0001869!2.91e-13!32;UBERON:0002791!7.89e-13!33;UBERON:0001049!1.23e-12!57;UBERON:0005068!1.23e-12!57;UBERON:0006241!1.23e-12!57;UBERON:0007135!1.23e-12!57;UBERON:0002020!2.02e-12!34;UBERON:0003528!2.02e-12!34;UBERON:0001893!2.02e-12!34;UBERON:0002616!3.85e-12!59;UBERON:0000955!8.35e-12!69;UBERON:0006238!8.35e-12!69;UBERON:0003056!1.12e-11!61;UBERON:0001017!2.85e-11!82;UBERON:0002420!4.67e-11!9;UBERON:0007245!4.67e-11!9;UBERON:0010009!4.67e-11!9;UBERON:0010011!4.67e-11!9;UBERON:0000454!4.67e-11!9;UBERON:0005743!1.24e-10!86;UBERON:0000033!2.02e-10!123;UBERON:0004121!7.45e-10!169;UBERON:0000153!8.69e-10!129;UBERON:0007811!8.69e-10!129;UBERON:0001950!1.10e-09!20;UBERON:0000924!1.54e-09!173;UBERON:0006601!1.54e-09!173;UBERON:0005383!2.06e-09!3;UBERON:0005382!2.06e-09!3;UBERON:0000073!2.15e-09!94;UBERON:0001016!2.15e-09!94;UBERON:0003075!3.83e-09!86;UBERON:0007284!3.83e-09!86;UBERON:0002619!8.53e-09!22;UBERON:0007023!1.16e-08!115;UBERON:0002346!1.24e-08!90;UBERON:0001894!1.88e-08!7;UBERON:0009663!1.88e-08!7;UBERON:0006222!1.88e-08!7;UBERON:0001874!9.10e-08!1;UBERON:0000956!1.02e-07!25;UBERON:0000203!1.02e-07!25;UBERON:0004111!1.06e-07!241;UBERON:0002372!4.09e-07!1;UBERON:0001961!4.09e-07!1;UBERON:0001744!4.09e-07!1;UBERON:0001735!4.09e-07!1;UBERON:0001882!4.34e-07!1;UBERON:0005403!4.34e-07!1;UBERON:0003343!4.49e-07!4;UBERON:0004785!4.49e-07!4;UBERON:0002022!4.90e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002394;1.13e-13;4!UBERON:0003928;1.13e-13;4!UBERON:0004802;1.81e-11;19!UBERON:0000115;1.81e-11;19!UBERON:0002048;4.74e-10;22!UBERON:0004807;4.74e-10;22!UBERON:0000117;4.74e-10;22!UBERON:0000171;4.74e-10;22!UBERON:0000170;4.74e-10;22!UBERON:0002294;2.18e-08;7!UBERON:0001173;2.18e-08;7 | |ontology_enrichment_uberon_v019=UBERON:0002394;1.13e-13;4!UBERON:0003928;1.13e-13;4!UBERON:0004802;1.81e-11;19!UBERON:0000115;1.81e-11;19!UBERON:0002048;4.74e-10;22!UBERON:0004807;4.74e-10;22!UBERON:0000117;4.74e-10;22!UBERON:0000171;4.74e-10;22!UBERON:0000170;4.74e-10;22!UBERON:0002294;2.18e-08;7!UBERON:0001173;2.18e-08;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,1.72e-11,19;UBERON:0000115,1.72e-11,19;UBERON:0002048,4.53e-10,22;UBERON:0000117,4.53e-10,22;UBERON:0000171,4.53e-10,22;UBERON:0000170,4.53e-10,22;UBERON:0005597,4.53e-10,22;UBERON:0000118,4.53e-10,22;UBERON:0002394,1.57e-09,6;UBERON:0003928,1.57e-09,6;UBERON:0004807,3.92e-08,28;UBERON:0005178,7.16e-07,34;UBERON:0002224,7.16e-07,34;UBERON:0002294,8.85e-07,9;UBERON:0001173,8.85e-07,9;UBERON:0004912,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,1.25314822272926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0.509991088181609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,0,0,0.0607495566580247,0.335434687599266,0,0,0,1.25501137532991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88195521672762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,10.5682350764099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,0.0981477185010256,0.825788063434183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0.628462359664008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,1.25314822272926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0.509991088181609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,0,0,0.0607495566580247,0.335434687599266,0,0,0,1.25501137532991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88195521672762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,10.5682350764099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,0.0981477185010256,0.825788063434183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0.628462359664008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p12@TSPAN7 | |short_description=p12@TSPAN7 | ||
}} | }} |
Latest revision as of 00:05, 25 September 2015
Short description: | p12@TSPAN7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_TSPAN7_5end |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | 0bp_to_ENST00000488893_5end |
EntrezGene: | TSPAN7 |
HGNC: | 11854 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 1.46e-50 | 1 |
seromucus secreting cell | 4.32e-26 | 2 |
epithelial cell of lung | 1.72e-11 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 1.72e-11 | 19 |
lung epithelium | 1.72e-11 | 19 |
lung | 4.53e-10 | 22 |
respiratory tube | 4.53e-10 | 22 |
respiration organ | 4.53e-10 | 22 |
pair of lungs | 4.53e-10 | 22 |
lung primordium | 4.53e-10 | 22 |
lung bud | 4.53e-10 | 22 |
bile duct | 1.57e-09 | 6 |
digestive system duct | 1.57e-09 | 6 |
respiratory system epithelium | 3.92e-08 | 28 |
thoracic cavity element | 7.16e-07 | 34 |
thoracic cavity | 7.16e-07 | 34 |
biliary system | 8.85e-07 | 9 |
biliary tree | 8.85e-07 | 9 |
biliary bud | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.46e-50 | 1 |
lung large cell carcinoma | 9.46e-18 | 3 |
lung cancer | 2.94e-14 | 15 |
respiratory system cancer | 1.95e-13 | 16 |
non-small cell lung carcinoma | 3.26e-11 | 5 |
carcinoma | 2.62e-08 | 106 |
lung carcinoma | 8.37e-07 | 9 |