FFCP PHASE1:Hg19::chr5:138534029..138534045,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64374 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24624 | |||
|TSSclassifier=strong | |||
|UniProt=F5H0H2 | |||
|association_with_transcript=11bp_to_ENST00000537511_5end | |||
|cluster_id=chr5:138534029..138534045,- | |||
|coexpression_cluster_id=C4467 | |||
|description=CAGE_peak_3_at_SIL1_5end | |||
|id=chr5:138534029..138534045,- | |||
|ontology_enrichment_celltype=CL:0000055!4.18e-11!180;CL:0000183!9.25e-09!59;CL:0000057!1.92e-08!75;CL:0000680!3.65e-08!57;CL:0000056!3.65e-08!57;CL:0000355!3.65e-08!57;CL:0000192!4.53e-08!42;CL:0000514!4.53e-08!42;CL:0000222!9.42e-08!119;CL:0000187!1.48e-07!54;CL:0000359!4.92e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.22e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.00e-09,76;CL:0000222,8.27e-08,121;CL:0000680,9.75e-08,58;CL:0000056,9.75e-08,58;CL:0000355,9.75e-08,58;CL:0000192,1.47e-07,43;CL:0000514,1.47e-07,43;CL:0000187,3.85e-07,55;CL:0000359,4.45e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.05e-12!143;UBERON:0002100!3.55e-12!216;UBERON:0000486!8.38e-11!82;UBERON:0004290!3.62e-10!70;UBERON:0000914!4.05e-10!83;UBERON:0002329!4.05e-10!83;UBERON:0003077!4.05e-10!83;UBERON:0003059!4.05e-10!83;UBERON:0007282!4.05e-10!83;UBERON:0009618!4.05e-10!83;UBERON:0007285!4.05e-10!83;UBERON:0003914!6.47e-10!118;UBERON:0000475!3.23e-09!365;UBERON:0001134!7.75e-09!61;UBERON:0002036!7.75e-09!61;UBERON:0003082!7.75e-09!61;UBERON:0002385!1.83e-08!63;UBERON:0001015!1.83e-08!63;UBERON:0000383!1.83e-08!63;UBERON:0003104!2.34e-08!238;UBERON:0009142!2.34e-08!238;UBERON:0009569!3.88e-08!113;UBERON:0000481!9.29e-08!347;UBERON:0000468!1.07e-07!659;UBERON:0000483!1.36e-07!309;UBERON:0000119!1.50e-07!312;UBERON:0004872!1.77e-07!84;UBERON:0000480!2.57e-07!626;UBERON:0000926!2.59e-07!448;UBERON:0004120!2.59e-07!448;UBERON:0006603!2.59e-07!448;UBERON:0000467!3.37e-07!625;UBERON:0001637!4.29e-07!42;UBERON:0003509!4.29e-07!42;UBERON:0004572!4.29e-07!42;UBERON:0000490!8.48e-07!138 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,4.82e-12,122;UBERON:0002100,1.60e-11,199;UBERON:0003104,1.81e-11,160;UBERON:0009142,1.81e-11,160;UBERON:0007503,2.18e-11,78;UBERON:0003914,2.09e-10,117;UBERON:0000486,2.18e-10,83;UBERON:0007524,9.80e-10,73;UBERON:0002329,9.96e-10,71;UBERON:0003059,9.96e-10,71;UBERON:0007282,9.96e-10,71;UBERON:0004290,9.96e-10,71;UBERON:0009618,9.96e-10,71;UBERON:0003077,1.60e-09,72;UBERON:0007285,1.60e-09,72;UBERON:0001134,2.10e-08,62;UBERON:0002036,2.10e-08,62;UBERON:0003082,2.10e-08,62;UBERON:0002385,4.73e-08,64;UBERON:0001015,4.73e-08,64;UBERON:0000383,4.73e-08,64;UBERON:0009569,7.54e-08,112;UBERON:0000490,9.41e-08,148;UBERON:0004872,3.09e-07,83;UBERON:0000483,3.34e-07,306;UBERON:0000119,3.67e-07,309;UBERON:0001637,3.91e-07,42;UBERON:0003509,3.91e-07,42;UBERON:0004572,3.91e-07,42;UBERON:0002417,4.40e-07,60;UBERON:0000916,4.40e-07,60 | |||
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| |||
|short_description=p3@SIL1 | |||
}} |
Latest revision as of 23:43, 24 September 2015
Short description: | p3@SIL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SIL1_5end |
Coexpression cluster: | C4467_Smooth_Fibroblast_Hepatocyte_pancreas_Mesenchymal_somatostatinoma_Adipocyte |
Association with transcript: | 11bp_to_ENST00000537511_5end |
EntrezGene: | SIL1 |
HGNC: | 24624 |
UniProt: | F5H0H2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.00e-09 | 76 |
mesodermal cell | 8.27e-08 | 121 |
muscle precursor cell | 9.75e-08 | 58 |
myoblast | 9.75e-08 | 58 |
multi-potent skeletal muscle stem cell | 9.75e-08 | 58 |
smooth muscle cell | 1.47e-07 | 43 |
smooth muscle myoblast | 1.47e-07 | 43 |
muscle cell | 3.85e-07 | 55 |
vascular associated smooth muscle cell | 4.45e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 4.82e-12 | 122 |
trunk | 1.60e-11 | 199 |
mesenchyme | 1.81e-11 | 160 |
entire embryonic mesenchyme | 1.81e-11 | 160 |
epithelial vesicle | 2.18e-11 | 78 |
epithelial tube | 2.09e-10 | 117 |
multilaminar epithelium | 2.18e-10 | 83 |
dense mesenchyme tissue | 9.80e-10 | 73 |
somite | 9.96e-10 | 71 |
presomitic mesoderm | 9.96e-10 | 71 |
presumptive segmental plate | 9.96e-10 | 71 |
dermomyotome | 9.96e-10 | 71 |
trunk paraxial mesoderm | 9.96e-10 | 71 |
paraxial mesoderm | 1.60e-09 | 72 |
presumptive paraxial mesoderm | 1.60e-09 | 72 |
skeletal muscle tissue | 2.10e-08 | 62 |
striated muscle tissue | 2.10e-08 | 62 |
myotome | 2.10e-08 | 62 |
muscle tissue | 4.73e-08 | 64 |
musculature | 4.73e-08 | 64 |
musculature of body | 4.73e-08 | 64 |
subdivision of trunk | 7.54e-08 | 112 |
unilaminar epithelium | 9.41e-08 | 148 |
splanchnic layer of lateral plate mesoderm | 3.09e-07 | 83 |
epithelium | 3.34e-07 | 306 |
cell layer | 3.67e-07 | 309 |
artery | 3.91e-07 | 42 |
arterial blood vessel | 3.91e-07 | 42 |
arterial system | 3.91e-07 | 42 |
abdominal segment of trunk | 4.40e-07 | 60 |
abdomen | 4.40e-07 | 60 |