FFCP PHASE1:Hg19::chr5:138533973..138534006,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64374 | |EntrezGene=64374 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24624 | |HGNC=24624 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H173,D6RG16,D6RAI3,D6RIU8 | |UniProt=Q9H173,D6RG16,D6RAI3,D6RIU8 | ||
|association_with_transcript=0bp_to_ENST00000265195,ENST00000440765,ENST00000505830,ENST00000507002,ENST00000508639_5end | |association_with_transcript=0bp_to_ENST00000265195,ENST00000440765,ENST00000505830,ENST00000507002,ENST00000508639_5end | ||
|cluster_id=chr5:138533973..138534006,- | |||
|coexpression_cluster_id=C4467 | |coexpression_cluster_id=C4467 | ||
|description=CAGE_peak_1_at_SIL1_5end | |description=CAGE_peak_1_at_SIL1_5end | ||
|id=chr5:138533973..138534006,- | |id=chr5:138533973..138534006,- | ||
|ontology_enrichment_celltype=CL:0000183!2.31e-09!59;CL:0000192!3.06e-09!42;CL:0000514!3.06e-09!42;CL:0000055!4.75e-09!180;CL:0000680!4.72e-08!57;CL:0000056!4.72e-08!57;CL:0000355!4.72e-08!57;CL:0000187!9.14e-08!54;CL:0000359!1.65e-07!32;CL:0000057!4.79e-07!75 | |ontology_enrichment_celltype=CL:0000183!2.31e-09!59;CL:0000192!3.06e-09!42;CL:0000514!3.06e-09!42;CL:0000055!4.75e-09!180;CL:0000680!4.72e-08!57;CL:0000056!4.72e-08!57;CL:0000355!4.72e-08!57;CL:0000187!9.14e-08!54;CL:0000359!1.65e-07!32;CL:0000057!4.79e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0000359;4.10e-07;32!CL:0000136;4.40e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,7.55e-09,43;CL:0000514,7.55e-09,43;CL:0000680,9.07e-08,58;CL:0000056,9.07e-08,58;CL:0000355,9.07e-08,58;CL:0000359,1.65e-07,32;CL:0000187,1.76e-07,55;CL:0000057,2.00e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!4.75e-12!216;UBERON:0000475!7.97e-11!365;UBERON:0005256!2.93e-10!143;UBERON:0001134!8.26e-09!61;UBERON:0002036!8.26e-09!61;UBERON:0003082!8.26e-09!61;UBERON:0004290!8.83e-09!70;UBERON:0000486!1.71e-08!82;UBERON:0002385!1.86e-08!63;UBERON:0001015!1.86e-08!63;UBERON:0000383!1.86e-08!63;UBERON:0003104!2.48e-08!238;UBERON:0009142!2.48e-08!238;UBERON:0009569!2.71e-08!113;UBERON:0000914!3.86e-08!83;UBERON:0002329!3.86e-08!83;UBERON:0003077!3.86e-08!83;UBERON:0003059!3.86e-08!83;UBERON:0007282!3.86e-08!83;UBERON:0009618!3.86e-08!83;UBERON:0007285!3.86e-08!83;UBERON:0000481!1.07e-07!347 | |ontology_enrichment_uberon=UBERON:0002100!4.75e-12!216;UBERON:0000475!7.97e-11!365;UBERON:0005256!2.93e-10!143;UBERON:0001134!8.26e-09!61;UBERON:0002036!8.26e-09!61;UBERON:0003082!8.26e-09!61;UBERON:0004290!8.83e-09!70;UBERON:0000486!1.71e-08!82;UBERON:0002385!1.86e-08!63;UBERON:0001015!1.86e-08!63;UBERON:0000383!1.86e-08!63;UBERON:0003104!2.48e-08!238;UBERON:0009142!2.48e-08!238;UBERON:0009569!2.71e-08!113;UBERON:0000914!3.86e-08!83;UBERON:0002329!3.86e-08!83;UBERON:0003077!3.86e-08!83;UBERON:0003059!3.86e-08!83;UBERON:0007282!3.86e-08!83;UBERON:0009618!3.86e-08!83;UBERON:0007285!3.86e-08!83;UBERON:0000481!1.07e-07!347 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.87e-12,160;UBERON:0009142,2.87e-12,160;UBERON:0002100,5.03e-12,199;UBERON:0005256,7.15e-11,122;UBERON:0007503,1.20e-09,78;UBERON:0007524,9.68e-09,73;UBERON:0001134,1.62e-08,62;UBERON:0002036,1.62e-08,62;UBERON:0003082,1.62e-08,62;UBERON:0002329,1.63e-08,71;UBERON:0003059,1.63e-08,71;UBERON:0007282,1.63e-08,71;UBERON:0004290,1.63e-08,71;UBERON:0009618,1.63e-08,71;UBERON:0003077,2.41e-08,72;UBERON:0007285,2.41e-08,72;UBERON:0000486,2.93e-08,83;UBERON:0002385,3.51e-08,64;UBERON:0001015,3.51e-08,64;UBERON:0000383,3.51e-08,64;UBERON:0009569,4.87e-08,112 | |||
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| ||
|short_description=p1@SIL1 | |short_description=p1@SIL1 | ||
}} | }} |
Latest revision as of 23:39, 24 September 2015
Short description: | p1@SIL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SIL1_5end |
Coexpression cluster: | C4467_Smooth_Fibroblast_Hepatocyte_pancreas_Mesenchymal_somatostatinoma_Adipocyte |
Association with transcript: | 0bp_to_ENST00000265195, ENST00000440765, ENST00000505830, ENST00000507002, ENST00000508639_5end |
EntrezGene: | SIL1 |
HGNC: | 24624 |
UniProt: | Q9H173D6RG16D6RAI3D6RIU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 7.55e-09 | 43 |
smooth muscle myoblast | 7.55e-09 | 43 |
muscle precursor cell | 9.07e-08 | 58 |
myoblast | 9.07e-08 | 58 |
multi-potent skeletal muscle stem cell | 9.07e-08 | 58 |
vascular associated smooth muscle cell | 1.65e-07 | 32 |
muscle cell | 1.76e-07 | 55 |
fibroblast | 2.00e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 2.87e-12 | 160 |
entire embryonic mesenchyme | 2.87e-12 | 160 |
trunk | 5.03e-12 | 199 |
trunk mesenchyme | 7.15e-11 | 122 |
epithelial vesicle | 1.20e-09 | 78 |
dense mesenchyme tissue | 9.68e-09 | 73 |
skeletal muscle tissue | 1.62e-08 | 62 |
striated muscle tissue | 1.62e-08 | 62 |
myotome | 1.62e-08 | 62 |
somite | 1.63e-08 | 71 |
presomitic mesoderm | 1.63e-08 | 71 |
presumptive segmental plate | 1.63e-08 | 71 |
dermomyotome | 1.63e-08 | 71 |
trunk paraxial mesoderm | 1.63e-08 | 71 |
paraxial mesoderm | 2.41e-08 | 72 |
presumptive paraxial mesoderm | 2.41e-08 | 72 |
multilaminar epithelium | 2.93e-08 | 83 |
muscle tissue | 3.51e-08 | 64 |
musculature | 3.51e-08 | 64 |
musculature of body | 3.51e-08 | 64 |
subdivision of trunk | 4.87e-08 | 112 |