FFCP PHASE1:Hg19::chr11:87908600..87908680,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23682 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9776 | |||
|TSSclassifier=strong | |||
|UniProt=P57729 | |||
|association_with_transcript=0bp_to_ENST00000243662,ENST00000526372,ENST00000531138,NM_022337_5end | |||
|cluster_id=chr11:87908600..87908680,- | |||
|description=CAGE_peak_1_at_RAB38_5end | |||
|id=chr11:87908600..87908680,- | |||
|ontology_enrichment_celltype=CL:0000066!1.97e-15!254;CL:0002076!1.68e-12!43;CL:0002321!4.99e-10!248;CL:0000220!1.18e-09!246;CL:0002077!1.08e-08!33;CL:0000147!2.10e-08!14;CL:0000223!6.27e-08!59;CL:0002251!2.94e-07!21;CL:0000148!5.48e-07!10;CL:0000541!5.48e-07!10;CL:0000076!6.33e-07!62;CL:0002368!6.75e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.11e-10;42!CL:0000147;7.81e-09;14!CL:0002251;9.82e-08;20!CL:0002077;1.44e-07;34!CL:0002368;1.97e-07;13!CL:0000148;2.63e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.03e-17,253;CL:0002076,1.26e-13,42;CL:0002321,6.14e-10,250;CL:0000223,5.80e-09,58;CL:0000147,8.49e-09,14;CL:0002077,1.67e-08,34;CL:0002251,8.59e-08,20;CL:0002368,2.10e-07,13;CL:0000148,2.67e-07,10;CL:0000541,2.67e-07,10;CL:0000076,7.81e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.20e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.66e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.87e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000922!2.20e-11!612;UBERON:0002050!9.88e-10!605;UBERON:0005423!9.88e-10!605;UBERON:0000923!1.93e-09!604;UBERON:0005291!1.93e-09!604;UBERON:0006598!1.93e-09!604;UBERON:0002532!1.93e-09!604;UBERON:0004119!2.74e-09!169;UBERON:0000925!2.74e-09!169;UBERON:0006595!2.74e-09!169;UBERON:0001444!4.45e-09!48;UBERON:0000468!4.74e-08!659;UBERON:0000467!7.65e-08!625;UBERON:0000480!1.26e-07!626;UBERON:0000165!2.13e-07!28;UBERON:0000930!2.13e-07!28;UBERON:0000464!5.13e-07!104;UBERON:0000161!7.21e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;1.85e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,4.52e-10,592;UBERON:0004119,1.24e-09,160;UBERON:0000925,1.24e-09,160;UBERON:0006595,1.24e-09,160;UBERON:0000033,1.03e-08,56;UBERON:0001444,2.39e-08,49;UBERON:0000153,2.65e-08,62;UBERON:0007811,2.65e-08,62;UBERON:0005423,5.65e-08,581;UBERON:0000165,1.75e-07,29;UBERON:0000930,1.75e-07,29;UBERON:0000161,5.52e-07,36;UBERON:0001007,8.02e-07,145;UBERON:0001555,8.02e-07,145;UBERON:0007026,8.02e-07,145 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,5.06599756336621,0.631719873426831,0.522371256399677,8.10921990454979,2.09340350391728,7.42700665242586,0.527533956456907,8.41611200128317,7.95353701746998,0.672325146451775,0,0.730310090387373,0.487932798790507,3.0780264519197,1.63200552995402,1.88072832886853,7.15589967827642,8.89683762973747,5.27279086298172,2.44522898393444,1.39571002064908,1.41679406364623,0.393364276848904,0,0.77408061658038,88.264437549977,71.3858027504453,156.036192290384,0,0,19.9648298747696,2.76997704265939,2.00544447470142,1.51907609501096,1.34349284543955,3.88672399222775,0.515151135268373,0.145398238779565,1.13362783106643,0.727752183563449,0.464858073811369,2.87817521615278,6.19412741790207,12.0830804775303,8.19714260893122,8.0403958162119,4.13694816883942,7.10033151942209,1.35426486594342,0.941211697713023,3.0019676506363,1.57306439111559,2.75475503133812,6.73950956859797,0.639337125799041,0.989553900560148,4.9865914405408,2.98357325372886,2.32167390902867,6.24123747160254,3.73693349397345,9.04495194924276,13.037072960505,7.8187984093842,3.63239701580021,7.36555271975129,5.06339819905415,0,0.850417199860174,0,0.22465726229299,0.150176892841506,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0,9.25199300053181,5.60508562981536,15.0128928321794,0,0,0,0.334372990781356,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,3.28875809207352,5.52700035571697,1.44901542867526,0,0,0,0.793165398882963,0.766440987203842,0.34362744548263,0.253019692019503,0,0,0,0.301150238155546,0.895906278080929,0,0.236777252044017,0,0.80642697289893,0,0.289648807765598,4.87613732627923,7.37770945674,3.45228916977532,0,0.50133791063589,0.579386075843295,0,0.486634870302636,11.8168521455085,5.76496433402666,5.70926107005319,4.45328856692223,74.6805340999712,74.1568885568859,6.49094787309367,6.96518949197069,6.24902414438666,0.238490624305342,0.571994910780128,0,3.18019851786728,1.72046919021225,4.51282652089873,7.34900324501212,6.71199097935849,2.75118041940067,3.9709043641994,12.9208379584664,8.89415656716776,3.3472061276467,0.805658634218294,1.52054421143703,1.46437234528902,2.57364156242108,1.62028389576352,11.0731663072259,10.1038217681776,8.1080265947992,6.13266549863533,22.7823758296351,8.24407847686833,0,0,56.6922267785295,0,0.759783069987479,0.132409180813219,1.43418310374407,3.19201543978521,1.12135520028461,0,1.72667283892012,0.311211035399766,3.23305612967251,3.92308567472301,1.51357427644931,0,0.937285727335186,4.05808099879417,13.1208518955223,6.42629326372745,5.75429043354448,4.85618833104395,6.60118791500568,4.08308342509786,17.9338103275181,3.71972812232756,2.37600571456411,2.47266929278557,0,0,12.4568724326009,9.63412603014124,2.21651292387346,5.26773145057006,4.90380473278431,3.60571341375832,3.62982986112067,0.358779271377724,0.640672166455702,1.90738711043606,0.900273288253207,2.47326070172253,0.772921620136887,1.30281799432113,0.168776332241266,0,0.504867548488229,2.02509777013059,0,0.355009592516614,0.806016785821122,3.22165125389926,83.8752102728708,93.2791732420655,60.8025742224688,10.4897387271452,9.27708378250397,11.8517821726909,11.2990549966754,10.3451548859008,12.0442528495024,0,0,5.52539685409922,2.78620756819187,2.88751792667834,0,0,0,0,0,0,0,0,0,6.64339909162183,1.40241773803446,3.2925920906512,1.47008711385542,0,0.982827216677626,1.77236972004421,0,0.245976877086227,6.17644117074692,57.2896489833025,247.283857166763,103.946957473626,130.734884563844,0.977424915930974,2.07986957055916,4.3299402607582,8.34698915820553,3.05262605013136,1.58803092537181,0.462985512576611,1.33177906564219,0,0,0.984868024349589,13.5722473780758,6.39113997841531,127.478014222017,15.7903200506928,61.9557174949229,173.922651088931,139.213656548188,61.724611345599,145.335655179303,21.9240600692933,155.496086655579,102.181046972626,130.913403463156,338.951759731598,207.037726652586,574.36549132923,242.922873352241,184.575349402466,288.930021645849,410.16093082488,1.00917975910825,1.30788020649984,2.12681028880755,0.517086863031111,0,2.535908257668,2.39344304926383,3.12022310734098,2.57207374262142,2.83698264046557,4.26275486425759,0.57191197463259,0,0.823240336780769,1.95441710576241,0.710783897485092,5.543663110534,0.904318131178758,0.871533458600294,1.49959486773086,24.3247561282381,2.00902836572851,12.6500363689819,0.958499421966331,1.14861935834114,1.42636905040718,0.289562613335158,2.67119219315498,0,0,0.591092280605782,0.431255149719035,0.513372145118994,10.1637849688985,2.60279707715243,0.773288812777695,2.17771144934653,0,0,0,0,4.53958519360818,21.5073324055661,6.51036056879365,0.207970861530807,0.178428988797162,0.157702415033935,1.05427273493442,2.10662269809403,13.6444502433591,9.31257641632544,1.99267679560631,4.24049087645917,15.8128178331911,0.195801157462741,0.343143423810856,0.206768026122887,0,0.213455115606889,6.06255142892519,1.66435439510497,5.44302527993425,0,0,0.280660094433074,0,0.511707249066704,0,0,1.3878872442239,0.710246901252508,2.5459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| |||
|short_description=p1@RAB38 | |||
}} |
Latest revision as of 23:37, 24 September 2015
Short description: | p1@RAB38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB38_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000243662, ENST00000526372, ENST00000531138, NM_022337_5end |
EntrezGene: | RAB38 |
HGNC: | 9776 |
UniProt: | P57729 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.03e-17 | 253 |
endo-epithelial cell | 1.26e-13 | 42 |
embryonic cell | 6.14e-10 | 250 |
endodermal cell | 5.80e-09 | 58 |
pigment cell | 8.49e-09 | 14 |
ecto-epithelial cell | 1.67e-08 | 34 |
epithelial cell of alimentary canal | 8.59e-08 | 20 |
respiratory epithelial cell | 2.10e-07 | 13 |
melanocyte | 2.67e-07 | 10 |
melanoblast | 2.67e-07 | 10 |
squamous epithelial cell | 7.81e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
embryo | 4.52e-10 | 592 |
endoderm-derived structure | 1.24e-09 | 160 |
endoderm | 1.24e-09 | 160 |
presumptive endoderm | 1.24e-09 | 160 |
head | 1.03e-08 | 56 |
subdivision of head | 2.39e-08 | 49 |
anterior region of body | 2.65e-08 | 62 |
craniocervical region | 2.65e-08 | 62 |
developing anatomical structure | 5.65e-08 | 581 |
mouth | 1.75e-07 | 29 |
stomodeum | 1.75e-07 | 29 |
orifice | 5.52e-07 | 36 |
digestive system | 8.02e-07 | 145 |
digestive tract | 8.02e-07 | 145 |
primitive gut | 8.02e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.87e-08 | 14 |