FFCP PHASE1:Hg19::chr11:87908600..87908680,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23682 | |EntrezGene=23682 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9776 | |HGNC=9776 | ||
|TSSclassifier=strong | |||
|UniProt=P57729 | |UniProt=P57729 | ||
|association_with_transcript=0bp_to_ENST00000243662,ENST00000526372,ENST00000531138,NM_022337_5end | |association_with_transcript=0bp_to_ENST00000243662,ENST00000526372,ENST00000531138,NM_022337_5end | ||
|cluster_id=chr11:87908600..87908680,- | |||
|description=CAGE_peak_1_at_RAB38_5end | |description=CAGE_peak_1_at_RAB38_5end | ||
|id=chr11:87908600..87908680,- | |id=chr11:87908600..87908680,- | ||
|ontology_enrichment_celltype=CL:0000066!1.97e-15!254;CL:0002076!1.68e-12!43;CL:0002321!4.99e-10!248;CL:0000220!1.18e-09!246;CL:0002077!1.08e-08!33;CL:0000147!2.10e-08!14;CL:0000223!6.27e-08!59;CL:0002251!2.94e-07!21;CL:0000148!5.48e-07!10;CL:0000541!5.48e-07!10;CL:0000076!6.33e-07!62;CL:0002368!6.75e-07!13 | |ontology_enrichment_celltype=CL:0000066!1.97e-15!254;CL:0002076!1.68e-12!43;CL:0002321!4.99e-10!248;CL:0000220!1.18e-09!246;CL:0002077!1.08e-08!33;CL:0000147!2.10e-08!14;CL:0000223!6.27e-08!59;CL:0002251!2.94e-07!21;CL:0000148!5.48e-07!10;CL:0000541!5.48e-07!10;CL:0000076!6.33e-07!62;CL:0002368!6.75e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.11e-10;42!CL:0000147;7.81e-09;14!CL:0002251;9.82e-08;20!CL:0002077;1.44e-07;34!CL:0002368;1.97e-07;13!CL:0000148;2.63e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.03e-17,253;CL:0002076,1.26e-13,42;CL:0002321,6.14e-10,250;CL:0000223,5.80e-09,58;CL:0000147,8.49e-09,14;CL:0002077,1.67e-08,34;CL:0002251,8.59e-08,20;CL:0002368,2.10e-07,13;CL:0000148,2.67e-07,10;CL:0000541,2.67e-07,10;CL:0000076,7.81e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.20e-07!14 | |ontology_enrichment_disease=DOID:1749!1.20e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;8.66e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.87e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000922!2.20e-11!612;UBERON:0002050!9.88e-10!605;UBERON:0005423!9.88e-10!605;UBERON:0000923!1.93e-09!604;UBERON:0005291!1.93e-09!604;UBERON:0006598!1.93e-09!604;UBERON:0002532!1.93e-09!604;UBERON:0004119!2.74e-09!169;UBERON:0000925!2.74e-09!169;UBERON:0006595!2.74e-09!169;UBERON:0001444!4.45e-09!48;UBERON:0000468!4.74e-08!659;UBERON:0000467!7.65e-08!625;UBERON:0000480!1.26e-07!626;UBERON:0000165!2.13e-07!28;UBERON:0000930!2.13e-07!28;UBERON:0000464!5.13e-07!104;UBERON:0000161!7.21e-07!35 | |ontology_enrichment_uberon=UBERON:0000922!2.20e-11!612;UBERON:0002050!9.88e-10!605;UBERON:0005423!9.88e-10!605;UBERON:0000923!1.93e-09!604;UBERON:0005291!1.93e-09!604;UBERON:0006598!1.93e-09!604;UBERON:0002532!1.93e-09!604;UBERON:0004119!2.74e-09!169;UBERON:0000925!2.74e-09!169;UBERON:0006595!2.74e-09!169;UBERON:0001444!4.45e-09!48;UBERON:0000468!4.74e-08!659;UBERON:0000467!7.65e-08!625;UBERON:0000480!1.26e-07!626;UBERON:0000165!2.13e-07!28;UBERON:0000930!2.13e-07!28;UBERON:0000464!5.13e-07!104;UBERON:0000161!7.21e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0000165;1.85e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,4.52e-10,592;UBERON:0004119,1.24e-09,160;UBERON:0000925,1.24e-09,160;UBERON:0006595,1.24e-09,160;UBERON:0000033,1.03e-08,56;UBERON:0001444,2.39e-08,49;UBERON:0000153,2.65e-08,62;UBERON:0007811,2.65e-08,62;UBERON:0005423,5.65e-08,581;UBERON:0000165,1.75e-07,29;UBERON:0000930,1.75e-07,29;UBERON:0000161,5.52e-07,36;UBERON:0001007,8.02e-07,145;UBERON:0001555,8.02e-07,145;UBERON:0007026,8.02e-07,145 | |||
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| ||
|short_description=p1@RAB38 | |short_description=p1@RAB38 | ||
}} | }} |
Latest revision as of 23:37, 24 September 2015
Short description: | p1@RAB38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB38_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000243662, ENST00000526372, ENST00000531138, NM_022337_5end |
EntrezGene: | RAB38 |
HGNC: | 9776 |
UniProt: | P57729 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.03e-17 | 253 |
endo-epithelial cell | 1.26e-13 | 42 |
embryonic cell | 6.14e-10 | 250 |
endodermal cell | 5.80e-09 | 58 |
pigment cell | 8.49e-09 | 14 |
ecto-epithelial cell | 1.67e-08 | 34 |
epithelial cell of alimentary canal | 8.59e-08 | 20 |
respiratory epithelial cell | 2.10e-07 | 13 |
melanocyte | 2.67e-07 | 10 |
melanoblast | 2.67e-07 | 10 |
squamous epithelial cell | 7.81e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
embryo | 4.52e-10 | 592 |
endoderm-derived structure | 1.24e-09 | 160 |
endoderm | 1.24e-09 | 160 |
presumptive endoderm | 1.24e-09 | 160 |
head | 1.03e-08 | 56 |
subdivision of head | 2.39e-08 | 49 |
anterior region of body | 2.65e-08 | 62 |
craniocervical region | 2.65e-08 | 62 |
developing anatomical structure | 5.65e-08 | 581 |
mouth | 1.75e-07 | 29 |
stomodeum | 1.75e-07 | 29 |
orifice | 5.52e-07 | 36 |
digestive system | 8.02e-07 | 145 |
digestive tract | 8.02e-07 | 145 |
primitive gut | 8.02e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.87e-08 | 14 |