FFCP PHASE1:Hg19::chr11:108093755..108093832,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=472 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=795 | |||
|TSSclassifier=strong | |||
|UniProt=E9PIQ5,E9PRG7 | |||
|association_with_transcript=0bp_to_ENST00000527891,ENST00000530958,ENST00000532931_5end | |||
|cluster_id=chr11:108093755..108093832,+ | |||
|coexpression_cluster_id=C3081 | |||
|description=CAGE_peak_1_at_ATM_5end | |||
|id=chr11:108093755..108093832,+ | |||
|ontology_enrichment_celltype=CL:0000542!6.17e-17!53;CL:0000051!6.17e-17!53;CL:0000838!1.30e-16!52;CL:0000791!2.31e-11!18;CL:0000789!2.31e-11!18;CL:0002420!2.31e-11!18;CL:0002419!2.31e-11!18;CL:0000790!2.31e-11!18;CL:0000738!2.78e-11!140;CL:0002087!2.48e-10!119;CL:0000945!9.89e-10!24;CL:0000826!9.89e-10!24;CL:0000037!1.16e-09!172;CL:0000566!1.16e-09!172;CL:0002031!8.86e-09!124;CL:0000236!3.15e-08!14;CL:0002032!3.56e-08!165;CL:0000837!3.56e-08!165;CL:0000625!6.55e-08!11;CL:0000988!2.64e-07!182;CL:0000084!6.40e-07!25;CL:0000827!6.40e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.35e-11;18!CL:0000789;2.35e-11;18!CL:0002419;2.35e-11;18!CL:0000542;3.22e-10;53!CL:0000945;1.12e-09;24!CL:0000236;1.90e-08;13!CL:0000625;6.30e-08;11!CL:0000084;4.90e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.17e-17,53;CL:0000051,6.17e-17,53;CL:0000838,1.30e-16,52;CL:0000738,1.28e-11,136;CL:0000791,2.31e-11,18;CL:0000789,2.31e-11,18;CL:0002420,2.31e-11,18;CL:0002419,2.31e-11,18;CL:0000790,2.31e-11,18;CL:0002087,1.08e-10,115;CL:0000037,6.74e-10,168;CL:0000945,9.89e-10,24;CL:0000826,9.89e-10,24;CL:0002031,4.47e-09,120;CL:0002032,2.20e-08,161;CL:0000837,2.20e-08,161;CL:0000236,3.15e-08,14;CL:0000625,6.55e-08,11;CL:0000988,8.93e-08,177;CL:0000084,6.40e-07,25;CL:0000827,6.40e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;2.35e-11;18!CL:0000051;3.22e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.21e-17!115;UBERON:0001049!1.13e-10!57;UBERON:0005068!1.13e-10!57;UBERON:0006241!1.13e-10!57;UBERON:0007135!1.13e-10!57;UBERON:0002616!9.51e-10!59;UBERON:0003080!4.26e-09!42;UBERON:0002780!5.66e-09!41;UBERON:0001890!5.66e-09!41;UBERON:0006240!5.66e-09!41;UBERON:0000955!1.67e-08!69;UBERON:0006238!1.67e-08!69;UBERON:0001017!1.52e-07!82;UBERON:0002346!4.82e-07!90;UBERON:0000073!6.24e-07!94;UBERON:0001016!6.24e-07!94;UBERON:0002020!9.20e-07!34;UBERON:0003528!9.20e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.85e-07;41!UBERON:0001890;6.85e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.29e-17,114;UBERON:0001049,1.52e-10,56;UBERON:0005068,1.52e-10,56;UBERON:0006241,1.52e-10,56;UBERON:0007135,1.52e-10,56;UBERON:0000073,1.09e-09,53;UBERON:0002616,1.09e-09,53;UBERON:0002780,5.66e-09,41;UBERON:0001890,5.66e-09,41;UBERON:0003080,5.66e-09,41;UBERON:0006240,5.66e-09,41;UBERON:0000955,2.26e-08,68;UBERON:0006238,2.26e-08,68;UBERON:0001016,7.99e-08,89;UBERON:0001017,2.03e-07,81;UBERON:0002346,7.89e-07,86;UBERON:0003528,9.20e-07,34;UBERON:0002020,9.20e-07,34 | |||
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| |||
|short_description=p1@ATM | |||
}} |
Latest revision as of 23:12, 24 September 2015
Short description: | p1@ATM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATM_5end |
Coexpression cluster: | C3081_Mast_CD19_pituitary_CD4_CD8_Peripheral_spinal |
Association with transcript: | 0bp_to_ENST00000527891, ENST00000530958, ENST00000532931_5end |
EntrezGene: | ATM |
HGNC: | 795 |
UniProt: | E9PIQ5E9PRG7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.17e-17 | 53 |
common lymphoid progenitor | 6.17e-17 | 53 |
lymphoid lineage restricted progenitor cell | 1.30e-16 | 52 |
leukocyte | 1.28e-11 | 136 |
mature alpha-beta T cell | 2.31e-11 | 18 |
alpha-beta T cell | 2.31e-11 | 18 |
immature T cell | 2.31e-11 | 18 |
mature T cell | 2.31e-11 | 18 |
immature alpha-beta T cell | 2.31e-11 | 18 |
nongranular leukocyte | 1.08e-10 | 115 |
hematopoietic stem cell | 6.74e-10 | 168 |
lymphocyte of B lineage | 9.89e-10 | 24 |
pro-B cell | 9.89e-10 | 24 |
hematopoietic lineage restricted progenitor cell | 4.47e-09 | 120 |
hematopoietic oligopotent progenitor cell | 2.20e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.20e-08 | 161 |
B cell | 3.15e-08 | 14 |
CD8-positive, alpha-beta T cell | 6.55e-08 | 11 |
hematopoietic cell | 8.93e-08 | 177 |
T cell | 6.40e-07 | 25 |
pro-T cell | 6.40e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.29e-17 | 114 |
neural tube | 1.52e-10 | 56 |
neural rod | 1.52e-10 | 56 |
future spinal cord | 1.52e-10 | 56 |
neural keel | 1.52e-10 | 56 |
regional part of nervous system | 1.09e-09 | 53 |
regional part of brain | 1.09e-09 | 53 |
regional part of forebrain | 5.66e-09 | 41 |
forebrain | 5.66e-09 | 41 |
anterior neural tube | 5.66e-09 | 41 |
future forebrain | 5.66e-09 | 41 |
brain | 2.26e-08 | 68 |
future brain | 2.26e-08 | 68 |
nervous system | 7.99e-08 | 89 |
central nervous system | 2.03e-07 | 81 |
neurectoderm | 7.89e-07 | 86 |
brain grey matter | 9.20e-07 | 34 |
gray matter | 9.20e-07 | 34 |