FFCP PHASE1:Hg19::chr2:220309634..220309650,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10290 | |EntrezGene=10290 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16901 | |HGNC=16901 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-116bp_to_ENST00000409595_5end | |association_with_transcript=-116bp_to_ENST00000409595_5end | ||
|cluster_id=chr2:220309634..220309650,+ | |||
|coexpression_cluster_id=C1894 | |coexpression_cluster_id=C1894 | ||
|description=CAGE_peak_13_at_SPEG_5end | |description=CAGE_peak_13_at_SPEG_5end | ||
|id=chr2:220309634..220309650,+ | |id=chr2:220309634..220309650,+ | ||
|ontology_enrichment_celltype=CL:0000077;1.23e-23;19!CL:0002097;1.27e-07;2!CL:0000047;1.87e-07;2 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0000077;1.23e-23;19!CL:0002097;1.27e-07;2!CL:0000047;1.87e-07;2 | ||
|ontology_enrichment_disease=DOID:0060084;2.49e-17;3!DOID:127;2.49e-17;3!DOID:5662;5.85e-14;1!DOID:0060072;3.02e-13;4 | |ontology_enrichment_celltype_v019_2=CL:0000077,1.14e-23,19;CL:0002097,1.28e-07,2;CL:0000213,1.56e-07,58;CL:0000215,1.56e-07,58;CL:0000076,6.64e-07,63 | ||
|ontology_enrichment_uberon=UBERON:0000989;5.85e-14;1!UBERON:0008811;5.85e-14;1!UBERON:0002146;1.25e-13;1!UBERON:0005623;1.25e-13;1 | |ontology_enrichment_development_v019=UBERON:0004874;5.85e-14;1!UBERON:0006965;1.87e-07;2 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.49e-17;3!DOID:127;2.49e-17;3!DOID:5662;5.85e-14;1!DOID:0060072;3.02e-13;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.64e-17,3;DOID:127,1.64e-17,3;DOID:5662,6.65e-14,1;DOID:0060072,2.21e-13,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.19e-25!115;UBERON:0003133!1.59e-07!48;UBERON:0001869!9.68e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0000989;5.85e-14;1!UBERON:0008811;5.85e-14;1!UBERON:0002146;1.25e-13;1!UBERON:0005623;1.25e-13;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000989,5.15e-14,1;UBERON:0008811,5.15e-14,1;UBERON:0006258,5.15e-14,1;UBERON:0005876,5.15e-14,1;UBERON:0004874,5.15e-14,1;UBERON:0002146,2.07e-13,1;UBERON:0005623,2.07e-13,1 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.42590878707255,3.48613383440118,9.69738014465953,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0.709522128141196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19548792950642,0,0,0,0,0,0,0,0,0.887790650732402,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.265372693510018,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.387956065953678,0,0,0,0,0.126621591911757,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,1.14580212005842,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,1.72844298240254,1.95952416065645,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302461847526478,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,1.90402606084398,0,0,0,0,0.398095888698616,0,0,0,0,0,2.35885750512418,1.82696004375648,0,0,0,0.895444205407437,0,0,0,8.68113172219117,0,0,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0.622077260032973,0.127894371303652,0.215649622793364,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0.207471757392654,0.484426936895553,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0.202612753855184,0,0,0.317079050969534,0,0,2.48105589194647,0,0,0,0,0,0,0,0,2.05785611324902,0,0.328863867814245,0,0,0.470958557103084,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0,0,0,0,0,0.154348316215889,0,0,1.71603825227734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0.134704106029175,0,0,0,0,0,0,0,0.855690109280065,0.406896178315738,0.665756774185513,0.402547587182052,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.42590878707255,3.48613383440118,9.69738014465953,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0.709522128141196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19548792950642,0,0,0,0,0,0,0,0,0.887790650732402,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.265372693510018,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.387956065953678,0,0,0,0,0.126621591911757,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,1.14580212005842,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,1.72844298240254,1.95952416065645,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302461847526478,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,1.90402606084398,0,0,0,0,0.398095888698616,0,0,0,0,0,2.35885750512418,1.82696004375648,0,0,0,0.895444205407437,0,0,0,8.68113172219117,0,0,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0.622077260032973,0.127894371303652,0.215649622793364,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0.207471757392654,0.484426936895553,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0.202612753855184,0,0,0.317079050969534,0,0,2.48105589194647,0,0,0,0,0,0,0,0,2.05785611324902,0,0.328863867814245,0,0,0.470958557103084,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0,0,0,0,0,0.154348316215889,0,0,1.71603825227734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0.134704106029175,0,0,0,0,0,0,0,0.855690109280065,0.406896178315738,0.665756774185513,0.402547587182052,0 | ||
|short_description=p13@SPEG | |short_description=p13@SPEG | ||
}} | }} |
Latest revision as of 21:19, 24 September 2015
Short description: | p13@SPEG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SPEG_5end |
Coexpression cluster: | C1894_mesothelioma_Mesothelial_aorta_mesenchymal_pleomorphic_heart_leiomyoma |
Association with transcript: | -116bp_to_ENST00000409595_5end |
EntrezGene: | SPEG |
HGNC: | 16901 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.14e-23 | 19 |
cortical cell of adrenal gland | 1.28e-07 | 2 |
lining cell | 1.56e-07 | 58 |
barrier cell | 1.56e-07 | 58 |
squamous epithelial cell | 6.64e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
penis | 5.15e-14 | 1 |
intromittent organ | 5.15e-14 | 1 |
lateral plate mesenchyme | 5.15e-14 | 1 |
undifferentiated genital tubercle | 5.15e-14 | 1 |
somatopleure | 5.15e-14 | 1 |
pulmonary valve | 2.07e-13 | 1 |
semi-lunar valve | 2.07e-13 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.64e-17 | 3 |
leiomyoma | 1.64e-17 | 3 |
pleomorphic carcinoma | 6.65e-14 | 1 |
benign neoplasm | 2.21e-13 | 4 |