FFCP PHASE1:Hg19::chr8:101734484..101734554,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26986 | |EntrezGene=26986 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8554 | |HGNC=8554 | ||
|TSSclassifier=strong | |||
|UniProt=E5RH24 | |UniProt=E5RH24 | ||
|association_with_transcript=-164bp_to_ENST00000520142_5end | |association_with_transcript=-164bp_to_ENST00000520142_5end | ||
|cluster_id=chr8:101734484..101734554,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_6_at_PABPC1_5end | |description=CAGE_peak_6_at_PABPC1_5end | ||
|id=chr8:101734484..101734554,- | |id=chr8:101734484..101734554,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.11e-07;7!CL:0000586;1.11e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.69e-07,7;CL:0000586,1.69e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!7.19e-08!239;DOID:162!1.55e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.33e-13!115;UBERON:0001049!6.03e-13!57;UBERON:0005068!6.03e-13!57;UBERON:0006241!6.03e-13!57;UBERON:0007135!6.03e-13!57;UBERON:0001017!1.52e-12!82;UBERON:0002780!2.20e-12!41;UBERON:0001890!2.20e-12!41;UBERON:0006240!2.20e-12!41;UBERON:0000955!2.71e-12!69;UBERON:0006238!2.71e-12!69;UBERON:0005743!3.87e-12!86;UBERON:0000073!7.24e-12!94;UBERON:0001016!7.24e-12!94;UBERON:0002020!1.31e-11!34;UBERON:0003528!1.31e-11!34;UBERON:0003080!1.48e-11!42;UBERON:0001893!2.48e-11!34;UBERON:0002791!5.73e-11!33;UBERON:0001869!6.69e-11!32;UBERON:0002616!2.78e-10!59;UBERON:0002619!9.51e-10!22;UBERON:0000956!1.41e-09!25;UBERON:0000203!1.41e-09!25;UBERON:0003075!1.47e-09!86;UBERON:0007284!1.47e-09!86;UBERON:0001950!4.47e-09!20;UBERON:0002346!1.59e-08!90;UBERON:0000033!1.09e-07!123;UBERON:0000153!1.38e-07!129;UBERON:0007811!1.38e-07!129;UBERON:0003056!5.10e-07!61 | |ontology_enrichment_uberon=UBERON:0007023!4.33e-13!115;UBERON:0001049!6.03e-13!57;UBERON:0005068!6.03e-13!57;UBERON:0006241!6.03e-13!57;UBERON:0007135!6.03e-13!57;UBERON:0001017!1.52e-12!82;UBERON:0002780!2.20e-12!41;UBERON:0001890!2.20e-12!41;UBERON:0006240!2.20e-12!41;UBERON:0000955!2.71e-12!69;UBERON:0006238!2.71e-12!69;UBERON:0005743!3.87e-12!86;UBERON:0000073!7.24e-12!94;UBERON:0001016!7.24e-12!94;UBERON:0002020!1.31e-11!34;UBERON:0003528!1.31e-11!34;UBERON:0003080!1.48e-11!42;UBERON:0001893!2.48e-11!34;UBERON:0002791!5.73e-11!33;UBERON:0001869!6.69e-11!32;UBERON:0002616!2.78e-10!59;UBERON:0002619!9.51e-10!22;UBERON:0000956!1.41e-09!25;UBERON:0000203!1.41e-09!25;UBERON:0003075!1.47e-09!86;UBERON:0007284!1.47e-09!86;UBERON:0001950!4.47e-09!20;UBERON:0002346!1.59e-08!90;UBERON:0000033!1.09e-07!123;UBERON:0000153!1.38e-07!129;UBERON:0007811!1.38e-07!129;UBERON:0003056!5.10e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.37e-12;20!UBERON:0002619;1.51e-12;22!UBERON:0002791;1.28e-11;32!UBERON:0003528;1.82e-11;34!UBERON:0002020;1.82e-11;34!UBERON:0001893;2.01e-11;34!UBERON:0001869;4.24e-11;32!UBERON:0002780;1.33e-10;41!UBERON:0001890;1.33e-10;41!UBERON:0000956;1.75e-10;25!UBERON:0000203;1.75e-10;25!UBERON:0000073;1.59e-09;53!UBERON:0002616;1.59e-09;53!UBERON:0003135;2.10e-08;11!UBERON:0000955;4.85e-08;68!UBERON:0000473;1.69e-07;8!UBERON:0001017;4.66e-07;75!UBERON:0001016;7.29e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.32e-19,81;UBERON:0000955,1.30e-17,68;UBERON:0006238,1.30e-17,68;UBERON:0001049,2.80e-17,56;UBERON:0005068,2.80e-17,56;UBERON:0006241,2.80e-17,56;UBERON:0007135,2.80e-17,56;UBERON:0001016,1.49e-16,89;UBERON:0000073,2.42e-16,53;UBERON:0002616,2.42e-16,53;UBERON:0002780,1.83e-15,41;UBERON:0001890,1.83e-15,41;UBERON:0003080,1.83e-15,41;UBERON:0006240,1.83e-15,41;UBERON:0003528,3.04e-15,34;UBERON:0002020,3.04e-15,34;UBERON:0001869,6.26e-14,32;UBERON:0001893,6.39e-14,34;UBERON:0002791,7.00e-14,32;UBERON:0002619,1.00e-13,22;UBERON:0007023,1.26e-13,114;UBERON:0001950,1.43e-13,20;UBERON:0003075,3.22e-13,82;UBERON:0007284,3.22e-13,82;UBERON:0002346,4.66e-12,86;UBERON:0000956,1.72e-11,25;UBERON:0000203,1.72e-11,25;UBERON:0011216,7.86e-11,223;UBERON:0003056,3.53e-10,61;UBERON:0003135,1.32e-08,11;UBERON:0010371,4.53e-08,104;UBERON:0000473,1.86e-07,8 | |||
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| ||
|short_description=p6@PABPC1 | |short_description=p6@PABPC1 | ||
}} | }} |
Latest revision as of 20:17, 24 September 2015
Short description: | p6@PABPC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PABPC1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -164bp_to_ENST00000520142_5end |
EntrezGene: | PABPC1 |
HGNC: | 8554 |
UniProt: | E5RH24 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.69e-07 | 7 |
germ cell | 1.69e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.32e-19 | 81 |
brain | 1.30e-17 | 68 |
future brain | 1.30e-17 | 68 |
neural tube | 2.80e-17 | 56 |
neural rod | 2.80e-17 | 56 |
future spinal cord | 2.80e-17 | 56 |
neural keel | 2.80e-17 | 56 |
nervous system | 1.49e-16 | 89 |
regional part of nervous system | 2.42e-16 | 53 |
regional part of brain | 2.42e-16 | 53 |
regional part of forebrain | 1.83e-15 | 41 |
forebrain | 1.83e-15 | 41 |
anterior neural tube | 1.83e-15 | 41 |
future forebrain | 1.83e-15 | 41 |
brain grey matter | 3.04e-15 | 34 |
gray matter | 3.04e-15 | 34 |
cerebral hemisphere | 6.26e-14 | 32 |
telencephalon | 6.39e-14 | 34 |
regional part of telencephalon | 7.00e-14 | 32 |
regional part of cerebral cortex | 1.00e-13 | 22 |
adult organism | 1.26e-13 | 114 |
neocortex | 1.43e-13 | 20 |
neural plate | 3.22e-13 | 82 |
presumptive neural plate | 3.22e-13 | 82 |
neurectoderm | 4.66e-12 | 86 |
cerebral cortex | 1.72e-11 | 25 |
pallium | 1.72e-11 | 25 |
organ system subdivision | 7.86e-11 | 223 |
pre-chordal neural plate | 3.53e-10 | 61 |
male reproductive organ | 1.32e-08 | 11 |
ecto-epithelium | 4.53e-08 | 104 |
testis | 1.86e-07 | 8 |