FFCP PHASE1:Hg19::chr9:123689030..123689103,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7185 | |EntrezGene=7185 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12031 | |HGNC=12031 | ||
|TSSclassifier=strong | |||
|UniProt=Q13077 | |UniProt=Q13077 | ||
|association_with_transcript=69bp_to_NM_005658,uc004bku.1_5end | |association_with_transcript=69bp_to_NM_005658,uc004bku.1_5end | ||
|cluster_id=chr9:123689030..123689103,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_4_at_TRAF1_5end | |description=CAGE_peak_4_at_TRAF1_5end | ||
|id=chr9:123689030..123689103,- | |id=chr9:123689030..123689103,- | ||
|ontology_enrichment_celltype=CL:0000542!4.56e-27!53;CL:0000051!4.56e-27!53;CL:0000838!2.69e-26!52;CL:0000738!1.35e-24!140;CL:0000791!7.54e-24!18;CL:0000789!7.54e-24!18;CL:0002420!7.54e-24!18;CL:0002419!7.54e-24!18;CL:0000790!7.54e-24!18;CL:0002087!7.87e-24!119;CL:0000084!5.25e-23!25;CL:0000827!5.25e-23!25;CL:0002031!5.71e-20!124;CL:0000988!1.45e-17!182;CL:0000037!1.80e-17!172;CL:0000566!1.80e-17!172;CL:0002032!8.95e-16!165;CL:0000837!8.95e-16!165;CL:0000625!2.52e-15!11;CL:0000624!3.86e-09!6;CL:0000080!1.40e-07!6;CL:0000990!5.60e-07!8;CL:0000451!7.42e-07!10 | |ontology_enrichment_celltype=CL:0000542!4.56e-27!53;CL:0000051!4.56e-27!53;CL:0000838!2.69e-26!52;CL:0000738!1.35e-24!140;CL:0000791!7.54e-24!18;CL:0000789!7.54e-24!18;CL:0002420!7.54e-24!18;CL:0002419!7.54e-24!18;CL:0000790!7.54e-24!18;CL:0002087!7.87e-24!119;CL:0000084!5.25e-23!25;CL:0000827!5.25e-23!25;CL:0002031!5.71e-20!124;CL:0000988!1.45e-17!182;CL:0000037!1.80e-17!172;CL:0000566!1.80e-17!172;CL:0002032!8.95e-16!165;CL:0000837!8.95e-16!165;CL:0000625!2.52e-15!11;CL:0000624!3.86e-09!6;CL:0000080!1.40e-07!6;CL:0000990!5.60e-07!8;CL:0000451!7.42e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.44e-48;18!CL:0000789;3.44e-48;18!CL:0002419;3.44e-48;18!CL:0000084;7.77e-41;25!CL:0000625;2.45e-30;11!CL:0000542;5.24e-20;53!CL:0000624;2.76e-17;6!CL:0000898;9.79e-10;3!CL:0002087;9.65e-09;104!CL:0000226;1.02e-08;3!CL:0000842;1.02e-08;3!CL:0000623;2.08e-08;3!CL:0000815;3.46e-07;2!CL:0000792;3.46e-07;2!CL:0002677;3.46e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.21e-48,18;CL:0000789,4.21e-48,18;CL:0002420,4.21e-48,18;CL:0002419,4.21e-48,18;CL:0000790,4.21e-48,18;CL:0000838,7.52e-43,52;CL:0000542,7.07e-42,53;CL:0000051,7.07e-42,53;CL:0000084,1.06e-40,25;CL:0000827,1.06e-40,25;CL:0000625,3.08e-30,11;CL:0002087,1.54e-22,115;CL:0000738,5.13e-20,136;CL:0002031,2.07e-18,120;CL:0000624,2.50e-17,6;CL:0000037,2.39e-14,168;CL:0000988,3.91e-13,177;CL:0002032,2.20e-12,161;CL:0000837,2.20e-12,161;CL:0000898,9.79e-10,3;CL:0000226,1.03e-08,3;CL:0000842,1.03e-08,3;CL:0000623,2.02e-08,3;CL:0000825,2.02e-08,3;CL:0000815,3.46e-07,2;CL:0000792,3.46e-07,2;CL:0002677,3.46e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.44e-48;18!CL:0000051;5.24e-20;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.16e-15!15;UBERON:0000179!1.16e-15!15;UBERON:0000463!1.16e-15!15;UBERON:0007023!1.71e-12!115;UBERON:0002193!1.53e-11!112;UBERON:0002390!1.60e-11!102;UBERON:0003061!1.60e-11!102;UBERON:0004177!3.10e-08!7 | |ontology_enrichment_uberon=UBERON:0000178!1.16e-15!15;UBERON:0000179!1.16e-15!15;UBERON:0000463!1.16e-15!15;UBERON:0007023!1.71e-12!115;UBERON:0002193!1.53e-11!112;UBERON:0002390!1.60e-11!102;UBERON:0003061!1.60e-11!102;UBERON:0004177!3.10e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.43e-20;15!UBERON:0000179;2.43e-20;15!UBERON:0000463;2.43e-20;15!UBERON:0002390;2.67e-11;32!UBERON:0002193;1.37e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.58e-20,15;UBERON:0000179,2.58e-20,15;UBERON:0000463,2.58e-20,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97349709889347,3.36612416744778,4.5652253161934,0,1.15148819429164,0,0,0,0,0.309868802321207,0.284338464974843,0,0.553995408531877,0.601633342410425,3.25516306073778,0.223915474239924,3.88672399222775,1.28787783817093,0,0,0,0.464858073811369,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0.918251677112708,0,0.639337125799041,0.329851300186716,0,0,0.870627715885752,0.56738522469114,0.622822248995575,0,0.521482918420201,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,9.44206896546399,4.71612915298998,6.99045096598331,26.5826527671178,13.3628129319772,17.9910166179199,29.2240092611867,20.7223449806423,16.7925367260657,13.5135675696009,17.602251144726,15.2428670473553,18.8586053961823,25.3234373089661,23.766101529583,22.314837601599,5.6348894001583,5.61835738988397,10.4535523804977,20.8489190563522,6.13152789763074,10.6524508099615,10.8798467568386,11.4683549156675,7.1619179924206,7.60361635558699,7.67933107296641,11.00684855928,18.7396089828519,11.6020853501568,13.1380479507367,4.03213486449465,4.27904313253612,5.50332734754636,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.458426764241994,0,0,0.97364218096405,0.174129737299267,0.26591592103773,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2329365839288,2.75843064282698,2.15627574859517,2.95188983443421,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.92859249633486,4.52999821719095,3.30855429190677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,6.08937131078603,7.64637207142375,7.40541343326411,5.47933083552915,5.75907182320672,2.59389324477087,5.40031437238115,7.9312517629427,0,0,0,0.371606350251437,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0.16480387422676,0,0.597743964753209,4.69682656402951,0,0,3.93871377475422,0,0.0898683511473268,0,0,1.38100767891707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0.307801034015188,0.113942055847001,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0.889563386041866,0.494255755786011,0.417687798021821,0,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.136905378891993,0,0,1.31443677139657,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,1.77813997338147,0,0,0,0,0.415440338029185,1.349843349309,0.77380195455795,0.0607495566580247,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.854299300541557,0.157204305099666,0,2.48083010905975,0,1.33971858218986,0,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0,1.21319294033318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.265729680626726,0.327130788511688,0,0,0,0.59996218756479,0.106691729694141,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0.175871244359621,0,0,0.336283722218824,0,0,0,1.95897778844825,0,0.135939465953663,0.0657727735628491,0,0,0.235479278551542,0.157115589916002,0,0,0,0.47775168788705,0.78624198594322,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.385870790539723,0.437119121007915,0.470317296361523,0.490296643507811,0,0.196308467114945,0,0,0,1.4097587696978,1.22469987149797,0.199882311849858,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,1.5870805215462,0.371995018166751,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0.639701945702943,0,0.452122368852043,0.806971285846153,0,0,0.202117188958219,0.217716747896961,0,5.79227655925453,0.645499848534087,0.332660356546013,0,0,0,0,0,0.611207220914332,0.406896178315738,0,3.01910690386539,1.28227396921293 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97349709889347,3.36612416744778,4.5652253161934,0,1.15148819429164,0,0,0,0,0.309868802321207,0.284338464974843,0,0.553995408531877,0.601633342410425,3.25516306073778,0.223915474239924,3.88672399222775,1.28787783817093,0,0,0,0.464858073811369,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0.918251677112708,0,0.639337125799041,0.329851300186716,0,0,0.870627715885752,0.56738522469114,0.622822248995575,0,0.521482918420201,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,9.44206896546399,4.71612915298998,6.99045096598331,26.5826527671178,13.3628129319772,17.9910166179199,29.2240092611867,20.7223449806423,16.7925367260657,13.5135675696009,17.602251144726,15.2428670473553,18.8586053961823,25.3234373089661,23.766101529583,22.314837601599,5.6348894001583,5.61835738988397,10.4535523804977,20.8489190563522,6.13152789763074,10.6524508099615,10.8798467568386,11.4683549156675,7.1619179924206,7.60361635558699,7.67933107296641,11.00684855928,18.7396089828519,11.6020853501568,13.1380479507367,4.03213486449465,4.27904313253612,5.50332734754636,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.458426764241994,0,0,0.97364218096405,0.174129737299267,0.26591592103773,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2329365839288,2.75843064282698,2.15627574859517,2.95188983443421,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.92859249633486,4.52999821719095,3.30855429190677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,6.08937131078603,7.64637207142375,7.40541343326411,5.47933083552915,5.75907182320672,2.59389324477087,5.40031437238115,7.9312517629427,0,0,0,0.371606350251437,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0.16480387422676,0,0.597743964753209,4.69682656402951,0,0,3.93871377475422,0,0.0898683511473268,0,0,1.38100767891707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0.307801034015188,0.113942055847001,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0.889563386041866,0.494255755786011,0.417687798021821,0,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.136905378891993,0,0,1.31443677139657,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,1.77813997338147,0,0,0,0,0.415440338029185,1.349843349309,0.77380195455795,0.0607495566580247,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.854299300541557,0.157204305099666,0,2.48083010905975,0,1.33971858218986,0,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0,1.21319294033318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.265729680626726,0.327130788511688,0,0,0,0.59996218756479,0.106691729694141,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0.175871244359621,0,0,0.336283722218824,0,0,0,1.95897778844825,0,0.135939465953663,0.0657727735628491,0,0,0.235479278551542,0.157115589916002,0,0,0,0.47775168788705,0.78624198594322,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.385870790539723,0.437119121007915,0.470317296361523,0.490296643507811,0,0.196308467114945,0,0,0,1.4097587696978,1.22469987149797,0.199882311849858,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,1.5870805215462,0.371995018166751,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0.639701945702943,0,0.452122368852043,0.806971285846153,0,0,0.202117188958219,0.217716747896961,0,5.79227655925453,0.645499848534087,0.332660356546013,0,0,0,0,0,0.611207220914332,0.406896178315738,0,3.01910690386539,1.28227396921293 | ||
|short_description=p4@TRAF1 | |short_description=p4@TRAF1 | ||
}} | }} |
Latest revision as of 20:10, 24 September 2015
Short description: | p4@TRAF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRAF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 69bp_to_NM_005658, uc004bku.1_5end |
EntrezGene: | TRAF1 |
HGNC: | 12031 |
UniProt: | Q13077 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.21e-48 | 18 |
alpha-beta T cell | 4.21e-48 | 18 |
immature T cell | 4.21e-48 | 18 |
mature T cell | 4.21e-48 | 18 |
immature alpha-beta T cell | 4.21e-48 | 18 |
lymphoid lineage restricted progenitor cell | 7.52e-43 | 52 |
lymphocyte | 7.07e-42 | 53 |
common lymphoid progenitor | 7.07e-42 | 53 |
T cell | 1.06e-40 | 25 |
pro-T cell | 1.06e-40 | 25 |
CD8-positive, alpha-beta T cell | 3.08e-30 | 11 |
nongranular leukocyte | 1.54e-22 | 115 |
leukocyte | 5.13e-20 | 136 |
hematopoietic lineage restricted progenitor cell | 2.07e-18 | 120 |
CD4-positive, alpha-beta T cell | 2.50e-17 | 6 |
hematopoietic stem cell | 2.39e-14 | 168 |
hematopoietic cell | 3.91e-13 | 177 |
hematopoietic oligopotent progenitor cell | 2.20e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.20e-12 | 161 |
naive T cell | 9.79e-10 | 3 |
single nucleate cell | 1.03e-08 | 3 |
mononuclear cell | 1.03e-08 | 3 |
natural killer cell | 2.02e-08 | 3 |
pro-NK cell | 2.02e-08 | 3 |
regulatory T cell | 3.46e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.46e-07 | 2 |
naive regulatory T cell | 3.46e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 2.58e-20 | 15 |
haemolymphatic fluid | 2.58e-20 | 15 |
organism substance | 2.58e-20 | 15 |