FFCP PHASE1:Hg19::chr11:842903..842923,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7106 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11859 | |||
|TSSclassifier=strong | |||
|UniProt=O14817 | |||
|association_with_transcript=-17bp_to_ENST00000397408,NM_001025235,NM_001025236,uc001lsg.1,uc001lsh.1_5end | |||
|cluster_id=chr11:842903..842923,+ | |||
|coexpression_cluster_id=C3206 | |||
|description=CAGE_peak_5_at_TSPAN4_5end | |||
|id=chr11:842903..842923,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.14e-34!180;CL:0000222!2.58e-24!119;CL:0000220!2.57e-20!246;CL:0002321!3.33e-20!248;CL:0000057!8.38e-19!75;CL:0000183!1.27e-16!59;CL:0000680!1.66e-15!57;CL:0000056!1.66e-15!57;CL:0000355!1.66e-15!57;CL:0000548!1.31e-14!679;CL:0000004!1.31e-14!679;CL:0000255!1.31e-14!679;CL:0000187!1.57e-14!54;CL:0000144!2.79e-14!625;CL:0000012!5.69e-14!682;CL:0002371!1.18e-13!591;CL:0000192!3.16e-13!42;CL:0000514!3.16e-13!42;CL:0000393!1.22e-12!60;CL:0000211!1.22e-12!60;CL:0000213!6.80e-09!57;CL:0000215!6.80e-09!57;CL:0000359!7.06e-09!32;CL:0002078!7.91e-08!44;CL:0000066!8.11e-08!254;CL:1000497!4.43e-07!18;CL:0002518!4.43e-07!18;CL:0000499!8.35e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000192;2.08e-10;43!CL:0000187;7.60e-09;55!CL:0000359;8.14e-09;32!CL:0000057;3.89e-08;73!CL:1000497;2.70e-07;17!CL:0002518;2.70e-07;17!CL:0000499;5.74e-07;28!CL:0000393;6.70e-07;61!CL:0000211;6.70e-07;61!CL:1000449;8.96e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.35e-26,121;CL:0000057,2.04e-20,76;CL:0002321,2.44e-20,250;CL:0000680,1.67e-16,58;CL:0000056,1.67e-16,58;CL:0000355,1.67e-16,58;CL:0000187,1.84e-15,55;CL:0000192,3.44e-14,43;CL:0000514,3.44e-14,43;CL:0000393,1.49e-13,61;CL:0000211,1.49e-13,61;CL:0000213,1.85e-09,58;CL:0000215,1.85e-09,58;CL:0000359,4.13e-09,32;CL:0002078,2.58e-08,45;CL:0000499,3.10e-07,28;CL:1000497,5.44e-07,17;CL:0002518,5.44e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;2.08e-10;43!CL:0000355;1.50e-08;58!CL:0000222;1.11e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.01e-20!143;UBERON:0000914!5.79e-18!83;UBERON:0002329!5.79e-18!83;UBERON:0003077!5.79e-18!83;UBERON:0003059!5.79e-18!83;UBERON:0007282!5.79e-18!83;UBERON:0009618!5.79e-18!83;UBERON:0007285!5.79e-18!83;UBERON:0002100!1.74e-17!216;UBERON:0004290!9.80e-17!70;UBERON:0000486!1.69e-16!82;UBERON:0002049!2.49e-16!79;UBERON:0007798!2.49e-16!79;UBERON:0003104!6.27e-16!238;UBERON:0009142!6.27e-16!238;UBERON:0000490!2.70e-15!138;UBERON:0003914!3.89e-15!118;UBERON:0001134!2.11e-14!61;UBERON:0002036!2.11e-14!61;UBERON:0003082!2.11e-14!61;UBERON:0002385!9.17e-14!63;UBERON:0001015!9.17e-14!63;UBERON:0000383!9.17e-14!63;UBERON:0000481!1.19e-12!347;UBERON:0000119!1.42e-12!312;UBERON:0000055!1.90e-12!69;UBERON:0004872!2.72e-12!84;UBERON:0000483!5.13e-12!309;UBERON:0000475!6.38e-12!365;UBERON:0001981!4.85e-11!60;UBERON:0007500!4.85e-11!60;UBERON:0004537!4.85e-11!60;UBERON:0006965!4.85e-11!60;UBERON:0004535!1.49e-09!110;UBERON:0001637!3.29e-09!42;UBERON:0003509!3.29e-09!42;UBERON:0004572!3.29e-09!42;UBERON:0001009!4.45e-09!113;UBERON:0000477!2.61e-08!286;UBERON:0004573!7.33e-08!33;UBERON:0004571!7.33e-08!33;UBERON:0000926!1.12e-07!448;UBERON:0004120!1.12e-07!448;UBERON:0006603!1.12e-07!448;UBERON:0003102!1.30e-07!95;UBERON:0000468!1.51e-07!659;UBERON:0000467!3.78e-07!625;UBERON:0000353!4.91e-07!17;UBERON:0000480!6.17e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;4.51e-08;74!UBERON:0002049;1.28e-07;75!UBERON:0007798;1.28e-07;75!UBERON:0004573;2.64e-07;33!UBERON:0004571;2.64e-07;33!UBERON:0001637;2.81e-07;42!UBERON:0003509;2.81e-07;42!UBERON:0004572;2.81e-07;42!UBERON:0000055;5.21e-07;65!UBERON:0007500;7.85e-07;56!UBERON:0001981;7.85e-07;56!UBERON:0004537;7.85e-07;56!UBERON:0000353;8.57e-07;15!UBERON:0006555;8.96e-07;15!UBERON:0004819;8.96e-07;15!UBERON:0001285;8.96e-07;15!UBERON:0007684;8.96e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.29e-20,78;UBERON:0002329,1.11e-17,71;UBERON:0003059,1.11e-17,71;UBERON:0007282,1.11e-17,71;UBERON:0004290,1.11e-17,71;UBERON:0009618,1.11e-17,71;UBERON:0007524,1.33e-17,73;UBERON:0003104,1.86e-17,160;UBERON:0009142,1.86e-17,160;UBERON:0000490,2.57e-17,148;UBERON:0003077,5.27e-17,72;UBERON:0007285,5.27e-17,72;UBERON:0000486,5.59e-17,83;UBERON:0002049,1.83e-16,78;UBERON:0007798,1.83e-16,78;UBERON:0005256,1.02e-15,122;UBERON:0001134,3.44e-15,62;UBERON:0002036,3.44e-15,62;UBERON:0003082,3.44e-15,62;UBERON:0003914,9.40e-15,117;UBERON:0002100,1.69e-14,199;UBERON:0002385,2.59e-14,64;UBERON:0001015,2.59e-14,64;UBERON:0000383,2.59e-14,64;UBERON:0000055,1.57e-12,68;UBERON:0004872,2.99e-12,83;UBERON:0004535,4.41e-11,109;UBERON:0000119,4.76e-11,309;UBERON:0007500,6.90e-11,59;UBERON:0001981,6.90e-11,59;UBERON:0004537,6.90e-11,59;UBERON:0006965,6.90e-11,59;UBERON:0000483,1.66e-10,306;UBERON:0001009,5.54e-10,112;UBERON:0001637,1.72e-09,42;UBERON:0003509,1.72e-09,42;UBERON:0004572,1.72e-09,42;UBERON:0004573,4.77e-08,33;UBERON:0004571,4.77e-08,33 | |||
|phase1_expression=2.90685406832891,2.35510576280081,0.422863212287913,2.00146596706261,4.02264984984559,1.74467704820074,5.06599756336621,3.15859936713415,1.82829939739887,2.45733936501509,10.4670175195864,2.83973783769224,5.27533956456907,2.97039247104112,6.2965501388304,0.672325146451775,3.01347264011988,2.92124036154949,3.90346239032406,3.81675280038043,15.0960511520747,8.46327747990837,0.85870796139317,1.23186982565596,3.38965126905968,0.229240217243854,0.410502947249729,0.157421562627358,0,0,0.154816123316076,3.67768489791571,7.228942050678,8.50434223383612,0.0774672005803016,0.142169232487422,0.293600439334847,0,0.200544447470142,0.217010870715852,0.223915474239924,1.29557466407592,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0.188242339542605,0.545812300115692,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,1.38175008892924,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,4.69490601792545,7.1603034632377,7.22878304769133,7.01873074890245,11.8774145547875,1.5905718941022,6.8128881842369,1.98523116044542,4.21285855178871,3.24988707064566,0.982343066232845,6.55731518926576,4.44941331341315,0.649094787309367,0.870648686496336,1.19662164466979,0,0,0,2.58391129576717,4.30117297553062,1.04142150482278,2.82653970962005,2.51699661725944,3.02629846134074,2.50793959844173,3.6178346283706,4.98072767761394,1.33888245105868,4.83395180530976,1.52054421143703,8.54217201418593,2.94130464276695,3.24056779152704,1.51809538082936,4.26605807989723,2.81528701208306,3.06633274931766,5.69559395740877,4.03043836646896,0,0,2.18047026071267,3.47880366186723,4.68532893158945,4.63432132846266,16.92336062418,4.25602058638028,9.53151920241922,2.1349799145941,7.64669400093196,3.7345324247972,3.3677668017422,6.04809041519797,7.7192288098915,6.91411109375999,6.56100009134631,3.74592092196385,6.27519003698894,4.93180645820944,3.64046945795671,3.39933183173076,4.6348766211742,3.0623125688234,6.1417158655884,4.54633437173368,5.94001428641027,4.45080472701402,8.19145225744224,13.6537446945085,2.86171393721913,3.1279629967991,1.93944880838928,8.77955241761676,9.19463387397059,10.065949946742,5.10444824220095,4.48474089222155,3.41691822109708,3.17897851739343,6.90209520994125,2.47326070172253,6.44101350114073,5.95573940261087,5.56961896396179,3.50773218580315,5.3011092591264,3.03764665519588,3.07127507955743,8.87523981291536,4.13083602733325,2.88253006927829,1.93260853163297,1.09098448236334,0.573609190778008,1.09776335516636,1.98794652482228,1.51052125730374,0.621966330092223,2.01856680700503,1.82488679537915,1.56449532329816,12.2215778256648,8.28809528114883,3.25057549622385,3.60939740834793,2.60274960087657,3.20310911148393,3.61516544825223,2.31617342738027,3.05031221729369,3.08451804844426,3.64044532032444,3.92442930250692,3.8474715694639,5.90524363699719,9.81692416624121,4.9388881359768,11.7606969108434,2.53510069643662,0,1.18157981336281,0.441463099414651,0.368965315629341,5.66173773985134,0.768251997860379,10.1161577931858,4.62433273093502,2.03694579348765,5.86454949558584,9.35941306751621,5.77325368101093,1.97081688457631,3.87448690978212,3.75352764178792,5.09284063834272,6.27838702374174,0.790204397959275,0,2.46217006087397,1.40402559083543,1.0404181360211,1.87467667973554,1.00789276919316,0.425325291727159,2.95543124919399,3.19697332365358,3.4504441124869,0,1.05658120815871,2.28060927094849,2.01767934783746,3.53478813593864,1.0159663086747,1.52795370223311,2.34434894420094,3.4214489204541,1.54241239054985,1.50171528921959,1.14330573052231,4.59737445815979,5.66748089483264,2.86019314701705,1.93907573636667,21.4593867511129,3.381211010224,11.7012771297343,8.32059495290929,7.9734286021264,9.92943924162948,10.3904649816279,2.28764789853036,7.05408087008876,6.58592269424615,4.23457039581856,3.55391948742546,10.2953743481346,3.31583314765545,2.61460037580088,3.29910870900788,4.86495122564762,1.50677127429638,0,2.15662369942424,1.14861935834114,7.13184525203592,4.05387658669222,6.57524232161227,5.19276793395697,0.112085143993527,0,0,0,0,0,0,0,0.637938751653163,0,0,0,3.18997878469764,5.50187573165645,11.9356610427884,4.78332981520856,6.95873056308931,10.0929545621718,5.73992933464295,8.12554469264841,2.27407504055985,21.729344971426,1.99267679560631,8.48098175291834,3.21469373531907,14.0976833373173,12.01001983338,0,0,0.106727557803444,1.81876542867756,9.98612637062982,6.95497674658265,2.72918588600655,3.06923946576125,4.2099014164961,2.56278298511402,2.04682899626681,2.73451665944133,7.42090332224955,3.23840356985577,5.85953693533319,3.36721339656617,4.15403543346897,6.97262270759755,0.725156697549733,3.80962293576241,0.920809889358963,2.87036120411517,5.64482620820823,7.21184282276833,3.15839729035188,2.15642943892361,15.6869953835371,7.30696123266303,2.00548094896464,7.96133688496276,4.25234263191289,4.10240240594065,9.2536351614173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| |||
|short_description=p5@TSPAN4 | |||
}} |
Latest revision as of 20:03, 24 September 2015
Short description: | p5@TSPAN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TSPAN4_5end |
Coexpression cluster: | C3206_Mesenchymal_Osteoblast_tenocyte_Synoviocyte_Alveolar_Fibroblast_Smooth |
Association with transcript: | -17bp_to_ENST00000397408, NM_001025235, NM_001025236, uc001lsg.1, uc001lsh.1_5end |
EntrezGene: | TSPAN4 |
HGNC: | 11859 |
UniProt: | O14817 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.35e-26 | 121 |
fibroblast | 2.04e-20 | 76 |
embryonic cell | 2.44e-20 | 250 |
muscle precursor cell | 1.67e-16 | 58 |
myoblast | 1.67e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.67e-16 | 58 |
muscle cell | 1.84e-15 | 55 |
smooth muscle cell | 3.44e-14 | 43 |
smooth muscle myoblast | 3.44e-14 | 43 |
electrically responsive cell | 1.49e-13 | 61 |
electrically active cell | 1.49e-13 | 61 |
lining cell | 1.85e-09 | 58 |
barrier cell | 1.85e-09 | 58 |
vascular associated smooth muscle cell | 4.13e-09 | 32 |
meso-epithelial cell | 2.58e-08 | 45 |
stromal cell | 3.10e-07 | 28 |
kidney cell | 5.44e-07 | 17 |
kidney epithelial cell | 5.44e-07 | 17 |