FFCP PHASE1:Hg19::chr22:40440895..40440904,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23112 | |EntrezGene=23112 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29190 | |HGNC=29190 | ||
|TSSclassifier=strong | |||
|UniProt=B0QYM5,Q9UPQ9 | |UniProt=B0QYM5,Q9UPQ9 | ||
|association_with_transcript=74bp_to_ENST00000301923,ENST00000441751,NM_001024843,uc003aym.2_5end | |association_with_transcript=74bp_to_ENST00000301923,ENST00000441751,NM_001024843,uc003aym.2_5end | ||
|cluster_id=chr22:40440895..40440904,+ | |||
|coexpression_cluster_id=C1134 | |||
|description=CAGE_peak_12_at_TNRC6B_5end | |description=CAGE_peak_12_at_TNRC6B_5end | ||
|id=chr22:40440895..40440904,+ | |id=chr22:40440895..40440904,+ | ||
|ontology_enrichment_celltype=CL:0000738!2.61e-25!140;CL:0000037!1.15e-22!172;CL:0000566!1.15e-22!172;CL:0000988!2.19e-22!182;CL:0002032!5.37e-18!165;CL:0000837!5.37e-18!165;CL:0002031!4.57e-15!124;CL:0002087!8.46e-15!119;CL:0000542!2.71e-12!53;CL:0000051!2.71e-12!53;CL:0000838!9.49e-12!52;CL:0000791!8.73e-09!18;CL:0000789!8.73e-09!18;CL:0002420!8.73e-09!18;CL:0002419!8.73e-09!18;CL:0000790!8.73e-09!18;CL:0000094!1.78e-08!8;CL:0000624!3.22e-08!6;CL:0000766!1.04e-07!76;CL:0000763!1.52e-07!112;CL:0000049!1.52e-07!112 | |ontology_enrichment_celltype=CL:0000738!2.61e-25!140;CL:0000037!1.15e-22!172;CL:0000566!1.15e-22!172;CL:0000988!2.19e-22!182;CL:0002032!5.37e-18!165;CL:0000837!5.37e-18!165;CL:0002031!4.57e-15!124;CL:0002087!8.46e-15!119;CL:0000542!2.71e-12!53;CL:0000051!2.71e-12!53;CL:0000838!9.49e-12!52;CL:0000791!8.73e-09!18;CL:0000789!8.73e-09!18;CL:0002420!8.73e-09!18;CL:0002419!8.73e-09!18;CL:0000790!8.73e-09!18;CL:0000094!1.78e-08!8;CL:0000624!3.22e-08!6;CL:0000766!1.04e-07!76;CL:0000763!1.52e-07!112;CL:0000049!1.52e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000775;4.34e-23;3!CL:0000623;1.41e-22;3!CL:0000236;3.30e-19;13!CL:0000094;3.67e-15;8!CL:0000542;2.02e-14;53!CL:0000081;4.56e-11;11!CL:0000625;6.38e-11;11!CL:0000784;2.87e-10;3!CL:0000945;3.46e-10;24!CL:0000791;5.74e-10;18!CL:0000789;5.74e-10;18!CL:0002419;5.74e-10;18!CL:0000084;4.11e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.72e-24,52;CL:0000542,5.60e-24,53;CL:0000051,5.60e-24,53;CL:0000775,5.23e-23,3;CL:0000623,1.36e-22,3;CL:0000825,1.36e-22,3;CL:0000738,1.97e-21,136;CL:0000236,7.43e-18,14;CL:0000037,1.33e-16,168;CL:0000988,1.48e-15,177;CL:0000094,3.95e-15,8;CL:0002087,8.57e-13,115;CL:0002032,1.68e-12,161;CL:0000837,1.68e-12,161;CL:0000081,4.81e-11,11;CL:0000625,6.72e-11,11;CL:0002031,1.70e-10,120;CL:0000945,3.24e-10,24;CL:0000826,3.24e-10,24;CL:0000784,4.19e-10,3;CL:0000791,5.48e-10,18;CL:0000789,5.48e-10,18;CL:0002420,5.48e-10,18;CL:0002419,5.48e-10,18;CL:0000790,5.48e-10,18;CL:0000084,3.97e-07,25;CL:0000827,3.97e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;2.02e-14;53!CL:0000790;5.74e-10;18!UBERON:0001045;2.55e-08;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.67e-07!102;UBERON:0003061!1.67e-07!102;UBERON:0007023!4.50e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;2.55e-08;1!UBERON:0001153;2.55e-08;1!UBERON:0009854;2.55e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,1.98e-08,1;UBERON:0001153,1.98e-08,1;UBERON:0001045,1.98e-08,1 | |||
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| ||
|short_description=p12@TNRC6B | |short_description=p12@TNRC6B | ||
}} | }} |
Latest revision as of 19:43, 24 September 2015
Short description: | p12@TNRC6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_TNRC6B_5end |
Coexpression cluster: | C1134_Eosinophils_Neutrophils_CD19_CD8_Natural_CD4_Basophils |
Association with transcript: | 74bp_to_ENST00000301923, ENST00000441751, NM_001024843, uc003aym.2_5end |
EntrezGene: | TNRC6B |
HGNC: | 29190 |
UniProt: | B0QYM5Q9UPQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.72e-24 | 52 |
lymphocyte | 5.60e-24 | 53 |
common lymphoid progenitor | 5.60e-24 | 53 |
neutrophil | 5.23e-23 | 3 |
natural killer cell | 1.36e-22 | 3 |
pro-NK cell | 1.36e-22 | 3 |
leukocyte | 1.97e-21 | 136 |
B cell | 7.43e-18 | 14 |
hematopoietic stem cell | 1.33e-16 | 168 |
hematopoietic cell | 1.48e-15 | 177 |
granulocyte | 3.95e-15 | 8 |
nongranular leukocyte | 8.57e-13 | 115 |
hematopoietic oligopotent progenitor cell | 1.68e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.68e-12 | 161 |
blood cell | 4.81e-11 | 11 |
CD8-positive, alpha-beta T cell | 6.72e-11 | 11 |
hematopoietic lineage restricted progenitor cell | 1.70e-10 | 120 |
lymphocyte of B lineage | 3.24e-10 | 24 |
pro-B cell | 3.24e-10 | 24 |
plasmacytoid dendritic cell | 4.19e-10 | 3 |
mature alpha-beta T cell | 5.48e-10 | 18 |
alpha-beta T cell | 5.48e-10 | 18 |
immature T cell | 5.48e-10 | 18 |
mature T cell | 5.48e-10 | 18 |
immature alpha-beta T cell | 5.48e-10 | 18 |
T cell | 3.97e-07 | 25 |
pro-T cell | 3.97e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 1.98e-08 | 1 |
caecum | 1.98e-08 | 1 |
midgut | 1.98e-08 | 1 |