FFCP PHASE1:Hg19::chr17:42200958..42200989,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:42200958..42200989,-
|short_description=p2@HDAC5
|description=CAGE_peak_2_at_HDAC5_5end
|association_with_transcript=24bp_to_ENST00000225983,ENST000003360...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10014 | |EntrezGene=10014 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14068 | |HGNC=14068 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQL6,Q5W9G6 | |UniProt=Q9UQL6,Q5W9G6 | ||
|association_with_transcript=24bp_to_ENST00000225983,ENST00000336057,ENST00000393622,NM_001015053,NM_005474,uc002ife.1,uc002iff.1,uc002ifh.2,uc010czp.1_5end | |||
|cluster_id=chr17:42200958..42200989,- | |||
|description=CAGE_peak_2_at_HDAC5_5end | |||
|id=chr17:42200958..42200989,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.68e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.52e-35!115;UBERON:0001049!8.43e-22!57;UBERON:0005068!8.43e-22!57;UBERON:0006241!8.43e-22!57;UBERON:0007135!8.43e-22!57;UBERON:0001017!5.02e-20!82;UBERON:0000073!1.18e-19!94;UBERON:0001016!1.18e-19!94;UBERON:0005743!3.40e-19!86;UBERON:0002616!1.72e-17!59;UBERON:0000955!2.15e-17!69;UBERON:0006238!2.15e-17!69;UBERON:0003080!4.67e-17!42;UBERON:0002780!1.86e-16!41;UBERON:0001890!1.86e-16!41;UBERON:0006240!1.86e-16!41;UBERON:0002346!2.14e-13!90;UBERON:0001893!5.25e-13!34;UBERON:0002020!6.17e-13!34;UBERON:0003528!6.17e-13!34;UBERON:0003075!8.35e-13!86;UBERON:0007284!8.35e-13!86;UBERON:0002791!1.78e-12!33;UBERON:0002619!4.68e-12!22;UBERON:0001869!7.89e-12!32;UBERON:0001950!2.13e-11!20;UBERON:0000924!1.92e-09!173;UBERON:0006601!1.92e-09!173;UBERON:0003056!2.00e-09!61;UBERON:0000956!2.72e-09!25;UBERON:0000203!2.72e-09!25;UBERON:0004121!6.27e-09!169;UBERON:0000153!2.60e-08!129;UBERON:0007811!2.60e-08!129;UBERON:0000033!6.26e-08!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.77e-12;41!UBERON:0001890;2.77e-12;41!UBERON:0002619;4.90e-12;22!UBERON:0000073;6.30e-12;53!UBERON:0002616;6.30e-12;53!UBERON:0001950;2.11e-11;20!UBERON:0001893;5.80e-11;34!UBERON:0003528;9.42e-11;34!UBERON:0002020;9.42e-11;34!UBERON:0002791;1.66e-10;32!UBERON:0001869;1.79e-10;32!UBERON:0007023;2.02e-09;114!UBERON:0000956;3.25e-09;25!UBERON:0000203;3.25e-09;25!UBERON:0001017;4.36e-08;75!UBERON:0001016;5.22e-08;83!UBERON:0000955;5.25e-08;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.78e-34,114;UBERON:0001049,3.44e-21,56;UBERON:0005068,3.44e-21,56;UBERON:0006241,3.44e-21,56;UBERON:0007135,3.44e-21,56;UBERON:0000073,4.49e-20,53;UBERON:0002616,4.49e-20,53;UBERON:0001016,7.15e-20,89;UBERON:0001017,1.80e-19,81;UBERON:0000955,7.61e-17,68;UBERON:0006238,7.61e-17,68;UBERON:0002780,1.86e-16,41;UBERON:0001890,1.86e-16,41;UBERON:0003080,1.86e-16,41;UBERON:0006240,1.86e-16,41;UBERON:0002346,9.68e-15,86;UBERON:0003075,3.78e-14,82;UBERON:0007284,3.78e-14,82;UBERON:0001893,5.25e-13,34;UBERON:0003528,6.17e-13,34;UBERON:0002020,6.17e-13,34;UBERON:0002619,4.67e-12,22;UBERON:0002791,7.07e-12,32;UBERON:0001869,7.89e-12,32;UBERON:0001950,2.13e-11,20;UBERON:0004121,5.52e-10,171;UBERON:0000924,5.52e-10,171;UBERON:0006601,5.52e-10,171;UBERON:0003056,1.90e-09,61;UBERON:0000956,2.72e-09,25;UBERON:0000203,2.72e-09,25;UBERON:0010371,1.97e-08,104;UBERON:0010314,1.08e-07,132 | |||
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| ||
|short_description=p2@HDAC5 | |||
}} | }} |
Latest revision as of 19:38, 24 September 2015
Short description: | p2@HDAC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HDAC5_5end |
Coexpression cluster: | NA |
Association with transcript: | 24bp_to_ENST00000225983, ENST00000336057, ENST00000393622, NM_001015053, NM_005474, uc002ife.1, uc002iff.1, uc002ifh.2, uc010czp.1_5end |
EntrezGene: | HDAC5 |
HGNC: | 14068 |
UniProt: | Q9UQL6Q5W9G6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.78e-34 | 114 |
neural tube | 3.44e-21 | 56 |
neural rod | 3.44e-21 | 56 |
future spinal cord | 3.44e-21 | 56 |
neural keel | 3.44e-21 | 56 |
regional part of nervous system | 4.49e-20 | 53 |
regional part of brain | 4.49e-20 | 53 |
nervous system | 7.15e-20 | 89 |
central nervous system | 1.80e-19 | 81 |
brain | 7.61e-17 | 68 |
future brain | 7.61e-17 | 68 |
regional part of forebrain | 1.86e-16 | 41 |
forebrain | 1.86e-16 | 41 |
anterior neural tube | 1.86e-16 | 41 |
future forebrain | 1.86e-16 | 41 |
neurectoderm | 9.68e-15 | 86 |
neural plate | 3.78e-14 | 82 |
presumptive neural plate | 3.78e-14 | 82 |
telencephalon | 5.25e-13 | 34 |
brain grey matter | 6.17e-13 | 34 |
gray matter | 6.17e-13 | 34 |
regional part of cerebral cortex | 4.67e-12 | 22 |
regional part of telencephalon | 7.07e-12 | 32 |
cerebral hemisphere | 7.89e-12 | 32 |
neocortex | 2.13e-11 | 20 |
ectoderm-derived structure | 5.52e-10 | 171 |
ectoderm | 5.52e-10 | 171 |
presumptive ectoderm | 5.52e-10 | 171 |
pre-chordal neural plate | 1.90e-09 | 61 |
cerebral cortex | 2.72e-09 | 25 |
pallium | 2.72e-09 | 25 |
ecto-epithelium | 1.97e-08 | 104 |
structure with developmental contribution from neural crest | 1.08e-07 | 132 |