FFCP PHASE1:Hg19::chr7:102553470..102553487,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=10234 | |EntrezGene=10234 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=16895 | |HGNC=16895 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_ENST00000249377_5end | |association_with_transcript=18bp_to_ENST00000249377_5end | ||
|cluster_id=chr7:102553470..102553487,+ | |||
|coexpression_cluster_id=C4637 | |coexpression_cluster_id=C4637 | ||
|description=CAGE_peak_2_at_LRRC17_5end | |description=CAGE_peak_2_at_LRRC17_5end | ||
Latest revision as of 19:15, 24 September 2015
| Short description: | p2@LRRC17 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_LRRC17_5end |
| Coexpression cluster: | C4637_Smooth_leiomyoma_mesenchymal_Iris_glioblastoma_Lens_Ciliary |
| Association with transcript: | 18bp_to_ENST00000249377_5end |
| EntrezGene: | LRRC17 |
| HGNC: | 16895 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@LRRC17 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| muscle precursor cell | 7.49e-40 | 58 |
| myoblast | 7.49e-40 | 58 |
| multi-potent skeletal muscle stem cell | 7.49e-40 | 58 |
| muscle cell | 1.64e-37 | 55 |
| electrically responsive cell | 1.40e-33 | 61 |
| electrically active cell | 1.40e-33 | 61 |
| smooth muscle cell | 6.56e-30 | 43 |
| smooth muscle myoblast | 6.56e-30 | 43 |
| vascular associated smooth muscle cell | 2.93e-23 | 32 |
| mesodermal cell | 2.33e-16 | 121 |
Showing 1 to 10 of 20 entries
| Ontology term | p-value | n |
|---|---|---|
| skeletal muscle tissue | 4.61e-38 | 62 |
| striated muscle tissue | 4.61e-38 | 62 |
| myotome | 4.61e-38 | 62 |
| muscle tissue | 4.49e-37 | 64 |
| musculature | 4.49e-37 | 64 |
| musculature of body | 4.49e-37 | 64 |
| somite | 5.00e-34 | 71 |
| presomitic mesoderm | 5.00e-34 | 71 |
| presumptive segmental plate | 5.00e-34 | 71 |
| dermomyotome | 5.00e-34 | 71 |
Showing 1 to 10 of 71 entries
