FFCP PHASE1:Hg19::chr8:100025476..100025548,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=157680 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2183 | |||
|TSSclassifier=strong | |||
|UniProt=Q7Z7G8 | |||
|association_with_transcript=0bp_to_ENST00000355155,ENST00000357162,ENST00000358544,ENST00000395996,ENST00000441350,ENST00000496144,NM_015243,NM_017890,NM_152564,NM_181661,uc003yis.2,uc003yit.2,uc003yiu.1,uc003yiv.2,uc003yiw.2_5end | |||
|cluster_id=chr8:100025476..100025548,+ | |||
|coexpression_cluster_id=C2651 | |||
|description=CAGE_peak_1_at_VPS13B_5end | |||
|id=chr8:100025476..100025548,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.48e-19!172;CL:0000566!2.48e-19!172;CL:0000738!3.55e-18!140;CL:0002032!1.81e-17!165;CL:0000837!1.81e-17!165;CL:0000988!8.71e-16!182;CL:0002031!1.20e-13!124;CL:0002087!1.84e-12!119;CL:0000542!2.27e-11!53;CL:0000051!2.27e-11!53;CL:0000838!2.84e-11!52;CL:0000791!2.85e-09!18;CL:0000789!2.85e-09!18;CL:0002420!2.85e-09!18;CL:0002419!2.85e-09!18;CL:0000790!2.85e-09!18;CL:0000763!1.14e-07!112;CL:0000049!1.14e-07!112;CL:0000084!8.35e-07!25;CL:0000827!8.35e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.86e-09;18!CL:0000789;2.86e-09;18!CL:0002419;2.86e-09;18!CL:0000542;6.19e-07;53!CL:0000084;6.81e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.23e-20,168;CL:0000738,4.84e-19,136;CL:0002032,3.32e-18,161;CL:0000837,3.32e-18,161;CL:0000988,6.78e-17,177;CL:0002031,2.09e-14,120;CL:0002087,3.42e-13,115;CL:0000542,2.27e-11,53;CL:0000051,2.27e-11,53;CL:0000838,2.84e-11,52;CL:0000791,2.85e-09,18;CL:0000789,2.85e-09,18;CL:0002420,2.85e-09,18;CL:0002419,2.85e-09,18;CL:0000790,2.85e-09,18;CL:0000763,3.48e-08,108;CL:0000049,3.48e-08,108;CL:0000084,8.35e-07,25;CL:0000827,8.35e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;2.86e-09;18!CL:0000051;6.19e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.31e-25!115;UBERON:0001049!3.48e-14!57;UBERON:0005068!3.48e-14!57;UBERON:0006241!3.48e-14!57;UBERON:0007135!3.48e-14!57;UBERON:0002616!2.18e-12!59;UBERON:0003080!3.97e-12!42;UBERON:0002780!8.00e-12!41;UBERON:0001890!8.00e-12!41;UBERON:0006240!8.00e-12!41;UBERON:0000955!1.00e-11!69;UBERON:0006238!1.00e-11!69;UBERON:0001017!7.74e-10!82;UBERON:0002020!4.67e-09!34;UBERON:0003528!4.67e-09!34;UBERON:0001893!6.19e-09!34;UBERON:0002791!9.76e-09!33;UBERON:0005743!1.75e-08!86;UBERON:0001869!2.12e-08!32;UBERON:0000073!3.00e-08!94;UBERON:0001016!3.00e-08!94;UBERON:0002390!2.56e-07!102;UBERON:0003061!2.56e-07!102;UBERON:0002346!3.12e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.06e-09;41!UBERON:0001890;5.06e-09;41!UBERON:0000073;4.87e-08;53!UBERON:0002616;4.87e-08;53!UBERON:0002791;5.43e-08;32!UBERON:0003528;8.93e-08;34!UBERON:0002020;8.93e-08;34!UBERON:0001869;9.10e-08;32!UBERON:0001893;1.59e-07;34!UBERON:0007023;1.78e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.98e-24,114;UBERON:0001049,7.05e-14,56;UBERON:0005068,7.05e-14,56;UBERON:0006241,7.05e-14,56;UBERON:0007135,7.05e-14,56;UBERON:0000073,1.22e-12,53;UBERON:0002616,1.22e-12,53;UBERON:0002780,8.00e-12,41;UBERON:0001890,8.00e-12,41;UBERON:0003080,8.00e-12,41;UBERON:0006240,8.00e-12,41;UBERON:0000955,1.94e-11,68;UBERON:0006238,1.94e-11,68;UBERON:0001017,1.41e-09,81;UBERON:0001016,3.02e-09,89;UBERON:0003528,4.67e-09,34;UBERON:0002020,4.67e-09,34;UBERON:0001893,6.19e-09,34;UBERON:0002791,1.36e-08,32;UBERON:0001869,2.12e-08,32;UBERON:0002390,7.47e-08,98;UBERON:0003061,7.47e-08,98;UBERON:0002346,5.65e-07,86 | |||
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| |||
|short_description=p1@VPS13B | |||
}} |
Latest revision as of 18:44, 24 September 2015
Short description: | p1@VPS13B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VPS13B_5end |
Coexpression cluster: | C2651_granulocyte_CD4_CD8_Small_CD19_CD34_Natural |
Association with transcript: | 0bp_to_ENST00000355155, ENST00000357162, ENST00000358544, ENST00000395996, ENST00000441350, ENST00000496144, NM_015243, NM_017890, NM_152564, NM_181661, uc003yis.2, uc003yit.2, uc003yiu.1, uc003yiv.2, uc003yiw.2_5end |
EntrezGene: | VPS13B |
HGNC: | 2183 |
UniProt: | Q7Z7G8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.23e-20 | 168 |
leukocyte | 4.84e-19 | 136 |
hematopoietic oligopotent progenitor cell | 3.32e-18 | 161 |
hematopoietic multipotent progenitor cell | 3.32e-18 | 161 |
hematopoietic cell | 6.78e-17 | 177 |
hematopoietic lineage restricted progenitor cell | 2.09e-14 | 120 |
nongranular leukocyte | 3.42e-13 | 115 |
lymphocyte | 2.27e-11 | 53 |
common lymphoid progenitor | 2.27e-11 | 53 |
lymphoid lineage restricted progenitor cell | 2.84e-11 | 52 |
mature alpha-beta T cell | 2.85e-09 | 18 |
alpha-beta T cell | 2.85e-09 | 18 |
immature T cell | 2.85e-09 | 18 |
mature T cell | 2.85e-09 | 18 |
immature alpha-beta T cell | 2.85e-09 | 18 |
myeloid cell | 3.48e-08 | 108 |
common myeloid progenitor | 3.48e-08 | 108 |
T cell | 8.35e-07 | 25 |
pro-T cell | 8.35e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.98e-24 | 114 |
neural tube | 7.05e-14 | 56 |
neural rod | 7.05e-14 | 56 |
future spinal cord | 7.05e-14 | 56 |
neural keel | 7.05e-14 | 56 |
regional part of nervous system | 1.22e-12 | 53 |
regional part of brain | 1.22e-12 | 53 |
regional part of forebrain | 8.00e-12 | 41 |
forebrain | 8.00e-12 | 41 |
anterior neural tube | 8.00e-12 | 41 |
future forebrain | 8.00e-12 | 41 |
brain | 1.94e-11 | 68 |
future brain | 1.94e-11 | 68 |
central nervous system | 1.41e-09 | 81 |
nervous system | 3.02e-09 | 89 |
brain grey matter | 4.67e-09 | 34 |
gray matter | 4.67e-09 | 34 |
telencephalon | 6.19e-09 | 34 |
regional part of telencephalon | 1.36e-08 | 32 |
cerebral hemisphere | 2.12e-08 | 32 |
hematopoietic system | 7.47e-08 | 98 |
blood island | 7.47e-08 | 98 |
neurectoderm | 5.65e-07 | 86 |