FFCP PHASE1:Hg19::chr1:20915530..20915635,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=978 | |EntrezGene=978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1712 | |HGNC=1712 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000461985_5end | |association_with_transcript=0bp_to_ENST00000461985_5end | ||
|cluster_id=chr1:20915530..20915635,+ | |||
|description=CAGE_peak_1_at_CDA_5end | |description=CAGE_peak_1_at_CDA_5end | ||
|id=chr1:20915530..20915635,+ | |id=chr1:20915530..20915635,+ | ||
|ontology_enrichment_celltype=CL:0002194!1.92e-24!63;CL:0000576!1.92e-24!63;CL:0000040!1.92e-24!63;CL:0000559!1.92e-24!63;CL:0000766!2.34e-24!76;CL:0000860!5.28e-23!45;CL:0002009!1.35e-22!65;CL:0002057!2.64e-21!42;CL:0000839!8.09e-19!70;CL:0000557!3.21e-18!71;CL:0000763!4.66e-08!112;CL:0000049!4.66e-08!112 | |ontology_enrichment_celltype=CL:0002194!1.92e-24!63;CL:0000576!1.92e-24!63;CL:0000040!1.92e-24!63;CL:0000559!1.92e-24!63;CL:0000766!2.34e-24!76;CL:0000860!5.28e-23!45;CL:0002009!1.35e-22!65;CL:0002057!2.64e-21!42;CL:0000839!8.09e-19!70;CL:0000557!3.21e-18!71;CL:0000763!4.66e-08!112;CL:0000049!4.66e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000473;9.43e-17;39!CL:0000234;9.43e-17;39!CL:0000860;2.00e-16;33!CL:0002057;2.00e-16;33!CL:0000576;6.25e-13;48!CL:0000766;4.64e-10;69 | |ontology_enrichment_celltype_v019=CL:0000473;9.43e-17;39!CL:0000234;9.43e-17;39!CL:0000860;2.00e-16;33!CL:0002057;2.00e-16;33!CL:0000576;6.25e-13;48!CL:0000766;4.64e-10;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.31e-25,48;CL:0000234,3.31e-25,48;CL:0002194,1.93e-22,59;CL:0000576,1.93e-22,59;CL:0000040,1.93e-22,59;CL:0000559,1.93e-22,59;CL:0000766,3.24e-22,72;CL:0000860,9.75e-22,42;CL:0002057,9.75e-22,42;CL:0002009,1.70e-20,61;CL:0000839,1.49e-16,66;CL:0000557,4.61e-16,67;CL:0000763,2.22e-07,108;CL:0000049,2.22e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;6.53e-16;42 | |ontology_enrichment_development_v019=CL:0002057;6.53e-16;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.48e-23!448;UBERON:0004120!2.48e-23!448;UBERON:0006603!2.48e-23!448;UBERON:0002390!6.32e-19!102;UBERON:0003061!6.32e-19!102;UBERON:0002193!7.11e-18!112;UBERON:0002371!3.32e-17!80;UBERON:0003081!6.12e-16!216;UBERON:0000468!1.57e-14!659;UBERON:0000480!8.69e-14!626;UBERON:0000467!1.14e-13!625;UBERON:0002405!1.39e-13!115;UBERON:0001474!2.24e-13!86;UBERON:0002204!2.75e-12!167;UBERON:0000922!1.07e-11!612;UBERON:0004765!1.18e-11!101;UBERON:0001434!1.18e-11!101;UBERON:0002050!1.08e-10!605;UBERON:0005423!1.08e-10!605;UBERON:0000923!1.92e-10!604;UBERON:0005291!1.92e-10!604;UBERON:0006598!1.92e-10!604;UBERON:0002532!1.92e-10!604;UBERON:0000062!6.90e-09!511;UBERON:0000479!1.16e-07!787;UBERON:0001737!1.65e-07!9 | |ontology_enrichment_uberon=UBERON:0000926!2.48e-23!448;UBERON:0004120!2.48e-23!448;UBERON:0006603!2.48e-23!448;UBERON:0002390!6.32e-19!102;UBERON:0003061!6.32e-19!102;UBERON:0002193!7.11e-18!112;UBERON:0002371!3.32e-17!80;UBERON:0003081!6.12e-16!216;UBERON:0000468!1.57e-14!659;UBERON:0000480!8.69e-14!626;UBERON:0000467!1.14e-13!625;UBERON:0002405!1.39e-13!115;UBERON:0001474!2.24e-13!86;UBERON:0002204!2.75e-12!167;UBERON:0000922!1.07e-11!612;UBERON:0004765!1.18e-11!101;UBERON:0001434!1.18e-11!101;UBERON:0002050!1.08e-10!605;UBERON:0005423!1.08e-10!605;UBERON:0000923!1.92e-10!604;UBERON:0005291!1.92e-10!604;UBERON:0006598!1.92e-10!604;UBERON:0002532!1.92e-10!604;UBERON:0000062!6.90e-09!511;UBERON:0000479!1.16e-07!787;UBERON:0001737!1.65e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.21e-07;9!UBERON:0001557;1.21e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0001737;1.21e-07;9!UBERON:0001557;1.21e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,4.63e-18,315;UBERON:0004120,4.63e-18,315;UBERON:0006603,4.63e-18,315;UBERON:0002390,2.88e-17,98;UBERON:0003061,2.88e-17,98;UBERON:0002193,7.73e-16,108;UBERON:0002371,3.03e-15,76;UBERON:0003081,1.26e-12,203;UBERON:0002405,1.53e-12,93;UBERON:0004765,5.15e-12,90;UBERON:0001474,1.08e-11,82;UBERON:0000922,3.92e-10,592;UBERON:0005423,4.07e-10,581;UBERON:0002204,4.22e-10,167;UBERON:0002050,1.99e-09,564;UBERON:0001434,2.05e-09,100;UBERON:0000923,2.64e-08,560;UBERON:0010316,2.64e-08,560;UBERON:0005291,2.64e-08,560;UBERON:0006598,2.64e-08,560;UBERON:0010317,2.64e-08,560;UBERON:0002532,2.64e-08,560;UBERON:0001737,1.22e-07,9 | |||
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| ||
|short_description=p1@CDA | |short_description=p1@CDA | ||
}} | }} |
Latest revision as of 18:31, 24 September 2015
Short description: | p1@CDA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000461985_5end |
EntrezGene: | CDA |
HGNC: | 1712 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.31e-25 | 48 |
phagocyte | 3.31e-25 | 48 |
monopoietic cell | 1.93e-22 | 59 |
monocyte | 1.93e-22 | 59 |
monoblast | 1.93e-22 | 59 |
promonocyte | 1.93e-22 | 59 |
myeloid leukocyte | 3.24e-22 | 72 |
classical monocyte | 9.75e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.75e-22 | 42 |
macrophage dendritic cell progenitor | 1.70e-20 | 61 |
myeloid lineage restricted progenitor cell | 1.49e-16 | 66 |
granulocyte monocyte progenitor cell | 4.61e-16 | 67 |
myeloid cell | 2.22e-07 | 108 |
common myeloid progenitor | 2.22e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 4.63e-18 | 315 |
mesoderm-derived structure | 4.63e-18 | 315 |
presumptive mesoderm | 4.63e-18 | 315 |
hematopoietic system | 2.88e-17 | 98 |
blood island | 2.88e-17 | 98 |
hemolymphoid system | 7.73e-16 | 108 |
bone marrow | 3.03e-15 | 76 |
lateral plate mesoderm | 1.26e-12 | 203 |
immune system | 1.53e-12 | 93 |
skeletal element | 5.15e-12 | 90 |
bone element | 1.08e-11 | 82 |
embryo | 3.92e-10 | 592 |
developing anatomical structure | 4.07e-10 | 581 |
musculoskeletal system | 4.22e-10 | 167 |
embryonic structure | 1.99e-09 | 564 |
skeletal system | 2.05e-09 | 100 |
germ layer | 2.64e-08 | 560 |
germ layer / neural crest | 2.64e-08 | 560 |
embryonic tissue | 2.64e-08 | 560 |
presumptive structure | 2.64e-08 | 560 |
germ layer / neural crest derived structure | 2.64e-08 | 560 |
epiblast (generic) | 2.64e-08 | 560 |
larynx | 1.22e-07 | 9 |