FFCP PHASE1:Hg19::chr7:99774945..99775026,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221914 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4450 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N158 | |||
|association_with_transcript=0bp_to_ENST00000292377,ENST00000471717,ENST00000480087,ENST00000482569,NM_152742,uc003utv.2,uc003utw.1,uc010lgr.2_5end | |||
|cluster_id=chr7:99774945..99775026,- | |||
|coexpression_cluster_id=C4711 | |||
|description=CAGE_peak_1_at_GPC2_5end | |||
|id=chr7:99774945..99775026,- | |||
|ontology_enrichment_celltype=CL:0002319!9.64e-13!25;CL:0000133!4.76e-12!59;CL:0000221!2.83e-09!71;CL:0000333!6.45e-09!41;CL:0000095!6.92e-08!17;CL:0000123!6.92e-08!17;CL:0000243!7.36e-07!15;CL:0000125!7.36e-07!15;CL:0000030!7.36e-07!15;CL:0000339!7.36e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.93e-13;25!CL:0000095;2.78e-08;17!CL:0000243;3.36e-07;15!CL:0000125;3.36e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.63e-13,25;CL:0000133,1.37e-12,59;CL:0000333,1.57e-09,41;CL:0000221,4.36e-09,72;CL:0000095,3.31e-08,17;CL:0000123,3.31e-08,17;CL:0000243,3.96e-07,15;CL:0000125,3.96e-07,15;CL:0000030,3.96e-07,15;CL:0000339,3.96e-07,15;CL:0000047,6.34e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000339;3.36e-07;15!CL:0000133;6.58e-07;59 | |||
|ontology_enrichment_disease=DOID:3095!2.48e-08!22;DOID:2994!2.48e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.68e-08;22!DOID:2994;2.68e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.13e-08,22;DOID:2994,1.13e-08,22 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=1.09007027562334,1.2846031433459,0.281908808191942,0,0.446961094427288,0.872338524100369,0,0,0,2.94880723801811,3.48900583986214,3.27662058195258,2.63766978228454,1.48519623552056,0.662794751455832,0.672325146451775,2.41077811209591,2.92124036154949,1.46379839637152,15.1438901434449,7.14002419354885,16.6131002383387,22.3264069962224,15.0561867580173,20.8400781727373,0.916960868975415,1.06730766284929,1.02324015707783,0,0.383829398097213,0.309632246632152,0,0.30120591877825,0.739508020333575,12.6271536945892,8.67232318173271,4.69760702935756,0,0.601633342410425,1.95309783644267,0.223915474239924,0.647787332037959,0.515151135268373,0.872389432677388,0.755751887377619,1.4555043671269,0.464858073811369,0.822335776043652,0,0,0,0.236482229888585,0,2.5819387343353,0,0.188242339542605,0.272906150057846,0.449446968890169,0.612167784741805,0.320929027076094,0,0.329851300186716,0.199463657621632,0.426224750532694,0.290209238628584,0.56738522469114,0.622822248995575,0.502497330513487,1.5644487552606,0.217188844705117,0.605399502633369,0,0.316462387440884,0,0.425208599930087,0.628975936525128,0.112328631146495,0.150176892841506,0.16072558669708,0,0.79566670879636,0.182664153764634,0,1.09227722252426,2.66852776159066,4.26730222566507,1.20118796110804,0.574752439954483,2.64417949113945,4.77026877267682,1.70763890732835,1.76171156811282,3.05818582500183,9.25199300053181,3.36305137788922,6.32121803460185,4.32761494250433,3.93010762749165,3.90642848099067,6.01871383406441,9.45174573237412,7.57516489175573,5.84480185223734,1.55974639639243,2.65145316727353,0.443067789167242,0.812411591295047,2.30564375506215,1.1705341280389,3.61763390128087,1.65810010671509,2.31842468588042,11.4180653634787,9.36392898313996,14.6349733326968,1.69964014046349,3.83220493601921,4.12352934579156,1.51811815211702,3.82278497188916,1.95325036156926,2.85135613334512,3.01150238155546,2.55973222308837,4.99722906209383,4.02521328474829,1.64225599384209,1.41124720257313,1.06976078313403,2.75166367377318,0,2.01210257911091,2.04580098949649,0.722878304769133,1.00267582127178,0.724232594804119,0,1.94653948121054,9.26441208207865,8.42571710357743,10.8036786402545,7.26933869012305,3.27865759463288,1.48313777113772,0.649094787309367,0.174129737299267,0.26591592103773,3.81584998888547,3.43196946468077,2.22874500797739,3.18019851786728,1.72046919021225,3.81854551768354,3.39184765154406,6.29249154314859,5.22724279686128,2.29894463190492,2.32575083252396,1.77883131343355,5.69025041699939,2.41697590265488,2.28081631715554,5.85748938115607,2.94130464276695,4.86085168729056,3.30408994651095,2.02076435363553,2.36484109014977,12.2653309972707,6.6448596169769,6.77846452542507,3.9534125230819,3.87780264148325,2.61656431285521,2.48485975847659,1.77282716330412,1.98613771219828,8.60509862246441,2.4826786753885,2.24271040056923,6.4049397437823,4.44001587150888,0.933633106199299,1.48181739276657,1.63461903113459,2.8757911252537,1.15235184896,4.21778577300834,1.5608003841516,0,1.19558944441441,4.46251094846307,3.72307772046703,3.37081936085396,1.63323337003915,6.5102188175237,0.826606249406124,1.18800285728205,0.989067717114227,1.82032272387605,1.43723628363248,6.56510844420858,6.25592599359821,0,0,0.612975591598039,0.45071417671979,0.794025282120147,8.9694817844431,0.85422955527427,0.423863802319124,8.10245959427886,1.23663035086127,2.06112432036503,0.558350568994769,3.54430297706659,1.55899208257918,4.79624171063818,0.828449087780694,0.80823028409406,5.32514388774922,1.41052937518696,2.88253006927829,0.773043412653187,1.09098448236334,0,48.545535039579,48.5058952056636,43.4565346331999,40.6351335660252,23.9704808331847,42.3373736527963,0,1.28648187638577,1.38134921352481,0.464367928031979,0.721879481669586,0.473227200159376,0.505754070234305,0.241011029883482,0.661763836394364,0.653638332277218,0.474541238222193,0.674156540800822,0.784885860501384,1.15424147083917,5.16708818237254,18.231430594448,2.057870056657,13.2307840246988,0,0.982827216677626,0,16.7755977777567,10.5770057147078,3.60292401626904,0.878002283269004,1.1240175325762,2.11110842064425,1.94435734832912,8.47101593806844,4.15973914111831,17.3197610430328,15.07095264676,2.11335649624479,2.02113026865503,2.31492756288305,3.23432058798817,0.790204397959275,2.57545848628462,0.984868024349589,0,0.891786973732369,0,0.671928512795438,0.425325291727159,0.447792613514241,1.16253575405585,0.383382679165211,0.492663237895943,0.176096868026452,0,0,0.25248486685276,4.12736312899099,1.90994212779139,1.17217447210047,5.13217338068116,4.73006466435288,0.600686115687835,4.0015700568281,4.37311228946907,3.92364061949952,3.44689943358465,1.42198887333556,0,1.690605505112,1.86156681609409,0,2.31486636835928,4.25547396069835,3.19706614819319,1.00084595560703,1.08524321078289,6.58592269424615,0.325736184293735,1.06617584622764,7.12756685640086,0.602878754119172,0,1.59956785891291,0,0.502257091432126,0,1.19812427745791,0,0,2.46128221334885,2.4657158706046,2.68591444859843,6.164682919644,0.985153801009636,1.5093930240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| |||
|short_description=p1@GPC2 | |||
}} |
Latest revision as of 17:52, 24 September 2015
Short description: | p1@GPC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPC2_5end |
Coexpression cluster: | C4711_Neurons_duodenum_occipital_parietal_temporal_brain_neuroblastoma |
Association with transcript: | 0bp_to_ENST00000292377, ENST00000471717, ENST00000480087, ENST00000482569, NM_152742, uc003utv.2, uc003utw.1, uc010lgr.2_5end |
EntrezGene: | GPC2 |
HGNC: | 4450 |
UniProt: | Q8N158 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.63e-13 | 25 |
neurectodermal cell | 1.37e-12 | 59 |
migratory neural crest cell | 1.57e-09 | 41 |
ectodermal cell | 4.36e-09 | 72 |
neuron associated cell | 3.31e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 3.31e-08 | 17 |
glial cell (sensu Vertebrata) | 3.96e-07 | 15 |
glial cell | 3.96e-07 | 15 |
glioblast | 3.96e-07 | 15 |
glioblast (sensu Vertebrata) | 3.96e-07 | 15 |
neuronal stem cell | 6.34e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.13e-08 | 22 |
germ cell cancer | 1.13e-08 | 22 |