FFCP PHASE1:Hg19::chr20:21087017..21087026,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=38166 | |HGNC=38166 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-42bp_to_ENST00000420705_5end | |association_with_transcript=-42bp_to_ENST00000420705_5end | ||
|cluster_id=chr20:21087017..21087026,- | |||
|description=CAGE_peak_3_at_LINC00237_5end | |description=CAGE_peak_3_at_LINC00237_5end | ||
|id=chr20:21087017..21087026,- | |id=chr20:21087017..21087026,- | ||
|ontology_enrichment_celltype=CL:0002274!7.15e-12!5;CL:0000457!7.15e-12!5;CL:0002191!7.15e-12!5;CL:0000097!7.15e-12!5;CL:0000831!7.15e-12!5;CL:0002028!7.15e-12!5 | |ontology_enrichment_celltype=CL:0002274!7.15e-12!5;CL:0000457!7.15e-12!5;CL:0002191!7.15e-12!5;CL:0000097!7.15e-12!5;CL:0000831!7.15e-12!5;CL:0002028!7.15e-12!5 | ||
|ontology_enrichment_celltype_v019=CL:0000333;2.51e-53;5!CL:0002321;1.08e-18;15!CL:0000097;1.71e-14;5!CL:0000163;1.16e-08;9 | |ontology_enrichment_celltype_v019=CL:0000333;2.51e-53;5!CL:0002321;1.08e-18;15!CL:0000097;1.71e-14;5!CL:0000163;1.16e-08;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.83e-14,5;CL:0002028,1.83e-14,5;CL:0000163,1.21e-08,9;CL:0000333,2.86e-07,41 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;1.09e-44;6!DOID:3193;5.96e-34;2!DOID:962;5.96e-34;2!DOID:171;2.22e-27;10!DOID:1192;3.66e-23;3!DOID:3095;3.89e-13;22!DOID:2994;3.89e-13;22!DOID:3093;8.14e-07;11 | |ontology_enrichment_disease_v019=DOID:169;1.09e-44;6!DOID:3193;5.96e-34;2!DOID:962;5.96e-34;2!DOID:171;2.22e-27;10!DOID:1192;3.66e-23;3!DOID:3095;3.89e-13;22!DOID:2994;3.89e-13;22!DOID:3093;8.14e-07;11 | ||
|ontology_enrichment_disease_v019_2=DOID:169,9.76e-45,6;DOID:3193,5.04e-34,2;DOID:962,5.04e-34,2;DOID:171,2.08e-27,10;DOID:1192,3.27e-23,3;DOID:3095,3.77e-13,22;DOID:2994,3.77e-13,22;DOID:3093,7.92e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.35e-50!57;UBERON:0005068!3.35e-50!57;UBERON:0006241!3.35e-50!57;UBERON:0007135!3.35e-50!57;UBERON:0000073!7.23e-46!94;UBERON:0001016!7.23e-46!94;UBERON:0002780!9.34e-46!41;UBERON:0001890!9.34e-46!41;UBERON:0006240!9.34e-46!41;UBERON:0002616!7.13e-45!59;UBERON:0003080!1.54e-44!42;UBERON:0005743!1.12e-42!86;UBERON:0001017!2.17e-42!82;UBERON:0000955!2.17e-39!69;UBERON:0006238!2.17e-39!69;UBERON:0002346!5.90e-36!90;UBERON:0003075!1.92e-35!86;UBERON:0007284!1.92e-35!86;UBERON:0001893!1.75e-34!34;UBERON:0003056!3.77e-34!61;UBERON:0001869!2.98e-33!32;UBERON:0002791!6.79e-32!33;UBERON:0002020!3.23e-31!34;UBERON:0003528!3.23e-31!34;UBERON:0007023!1.48e-28!115;UBERON:0000924!2.29e-25!173;UBERON:0006601!2.29e-25!173;UBERON:0004121!1.33e-24!169;UBERON:0000153!6.19e-24!129;UBERON:0007811!6.19e-24!129;UBERON:0000033!1.01e-23!123;UBERON:0002619!3.86e-22!22;UBERON:0001950!8.05e-21!20;UBERON:0000956!3.04e-19!25;UBERON:0000203!3.04e-19!25;UBERON:0000369!9.84e-15!4;UBERON:0002435!9.84e-15!4;UBERON:0000204!9.84e-15!4;UBERON:0010082!9.84e-15!4;UBERON:0000200!3.19e-14!6;UBERON:0002308!3.35e-14!9;UBERON:0000125!3.35e-14!9;UBERON:0002420!6.69e-14!9;UBERON:0007245!6.69e-14!9;UBERON:0010009!6.69e-14!9;UBERON:0010011!6.69e-14!9;UBERON:0000454!6.69e-14!9;UBERON:0001894!4.63e-13!7;UBERON:0006222!4.63e-13!7;UBERON:0009663!7.26e-13!7;UBERON:0005383!2.44e-11!3;UBERON:0005382!2.44e-11!3;UBERON:0002771!4.29e-11!3;UBERON:0001871!8.86e-11!7;UBERON:0000025!1.69e-10!194;UBERON:0000007!1.20e-08!2;UBERON:0001873!3.21e-08!2;UBERON:0010122!3.21e-08!2;UBERON:0001897!3.98e-08!2;UBERON:0003076!8.16e-08!15;UBERON:0003057!8.16e-08!15;UBERON:0000013!2.12e-07!5;UBERON:0002410!2.12e-07!5;UBERON:0002298!3.22e-07!8;UBERON:0004111!4.68e-07!241;UBERON:0004733!4.96e-07!12;UBERON:0002028!4.96e-07!12;UBERON:0007277!4.96e-07!12;UBERON:0000349!7.15e-07!5 | |ontology_enrichment_uberon=UBERON:0001049!3.35e-50!57;UBERON:0005068!3.35e-50!57;UBERON:0006241!3.35e-50!57;UBERON:0007135!3.35e-50!57;UBERON:0000073!7.23e-46!94;UBERON:0001016!7.23e-46!94;UBERON:0002780!9.34e-46!41;UBERON:0001890!9.34e-46!41;UBERON:0006240!9.34e-46!41;UBERON:0002616!7.13e-45!59;UBERON:0003080!1.54e-44!42;UBERON:0005743!1.12e-42!86;UBERON:0001017!2.17e-42!82;UBERON:0000955!2.17e-39!69;UBERON:0006238!2.17e-39!69;UBERON:0002346!5.90e-36!90;UBERON:0003075!1.92e-35!86;UBERON:0007284!1.92e-35!86;UBERON:0001893!1.75e-34!34;UBERON:0003056!3.77e-34!61;UBERON:0001869!2.98e-33!32;UBERON:0002791!6.79e-32!33;UBERON:0002020!3.23e-31!34;UBERON:0003528!3.23e-31!34;UBERON:0007023!1.48e-28!115;UBERON:0000924!2.29e-25!173;UBERON:0006601!2.29e-25!173;UBERON:0004121!1.33e-24!169;UBERON:0000153!6.19e-24!129;UBERON:0007811!6.19e-24!129;UBERON:0000033!1.01e-23!123;UBERON:0002619!3.86e-22!22;UBERON:0001950!8.05e-21!20;UBERON:0000956!3.04e-19!25;UBERON:0000203!3.04e-19!25;UBERON:0000369!9.84e-15!4;UBERON:0002435!9.84e-15!4;UBERON:0000204!9.84e-15!4;UBERON:0010082!9.84e-15!4;UBERON:0000200!3.19e-14!6;UBERON:0002308!3.35e-14!9;UBERON:0000125!3.35e-14!9;UBERON:0002420!6.69e-14!9;UBERON:0007245!6.69e-14!9;UBERON:0010009!6.69e-14!9;UBERON:0010011!6.69e-14!9;UBERON:0000454!6.69e-14!9;UBERON:0001894!4.63e-13!7;UBERON:0006222!4.63e-13!7;UBERON:0009663!7.26e-13!7;UBERON:0005383!2.44e-11!3;UBERON:0005382!2.44e-11!3;UBERON:0002771!4.29e-11!3;UBERON:0001871!8.86e-11!7;UBERON:0000025!1.69e-10!194;UBERON:0000007!1.20e-08!2;UBERON:0001873!3.21e-08!2;UBERON:0010122!3.21e-08!2;UBERON:0001897!3.98e-08!2;UBERON:0003076!8.16e-08!15;UBERON:0003057!8.16e-08!15;UBERON:0000013!2.12e-07!5;UBERON:0002410!2.12e-07!5;UBERON:0002298!3.22e-07!8;UBERON:0004111!4.68e-07!241;UBERON:0004733!4.96e-07!12;UBERON:0002028!4.96e-07!12;UBERON:0007277!4.96e-07!12;UBERON:0000349!7.15e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.51e-53;5!UBERON:0002410;2.51e-53;5!UBERON:0003714;5.96e-34;2!UBERON:0000010;2.87e-30;8 | |ontology_enrichment_uberon_v019=UBERON:0000013;2.51e-53;5!UBERON:0002410;2.51e-53;5!UBERON:0003714;5.96e-34;2!UBERON:0000010;2.87e-30;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.19e-53,5;UBERON:0002410,2.19e-53,5;UBERON:0003714,5.04e-34,2;UBERON:0000010,2.66e-30,8 | |||
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|short_description=p3@LINC00237 | |short_description=p3@LINC00237 | ||
}} | }} |
Latest revision as of 17:45, 24 September 2015
Short description: | p3@LINC00237 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LINC00237_5end |
Coexpression cluster: | NA |
Association with transcript: | -42bp_to_ENST00000420705_5end |
EntrezGene: | NA |
HGNC: | 38166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.83e-14 | 5 |
basophil mast progenitor cell | 1.83e-14 | 5 |
endocrine cell | 1.21e-08 | 9 |
migratory neural crest cell | 2.86e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.19e-53 | 5 |
autonomic nervous system | 2.19e-53 | 5 |
neural tissue | 5.04e-34 | 2 |
peripheral nervous system | 2.66e-30 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 9.76e-45 | 6 |
peripheral nerve sheath neoplasm | 5.04e-34 | 2 |
neurofibroma | 5.04e-34 | 2 |
neuroectodermal tumor | 2.08e-27 | 10 |
peripheral nervous system neoplasm | 3.27e-23 | 3 |
germ cell and embryonal cancer | 3.77e-13 | 22 |
germ cell cancer | 3.77e-13 | 22 |
nervous system cancer | 7.92e-07 | 11 |