FFCP PHASE1:Hg19::chr6:130686994..130687026,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=154075 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21574 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-424bp_to_ENST00000368134,uc003qbx.2_5end | |||
|cluster_id=chr6:130686994..130687026,- | |||
|description=CAGE_peak_4_at_SAMD3_5end | |||
|id=chr6:130686994..130687026,- | |||
|ontology_enrichment_celltype=CL:0000055!2.81e-23!180;CL:0000192!1.17e-17!42;CL:0000514!1.17e-17!42;CL:0000359!1.66e-17!32;CL:0000680!1.91e-14!57;CL:0000056!1.91e-14!57;CL:0000355!1.91e-14!57;CL:0000187!2.54e-14!54;CL:0000393!7.03e-14!60;CL:0000211!7.03e-14!60;CL:0000183!1.75e-12!59;CL:0000057!7.82e-12!75;CL:0002334!1.34e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.05e-26;32!CL:0000192;5.17e-17;43!CL:0002539;5.65e-13;10!CL:0002595;8.04e-12;5!CL:1000306;2.14e-10;4!CL:0002547;2.14e-10;4!CL:0002594;8.09e-10;4!CL:0002334;8.66e-10;12!CL:0000187;2.90e-09;55!CL:0000393;6.97e-08;61!CL:0000211;6.97e-08;61!CL:0002580;2.76e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.34e-28,32;CL:0000192,1.70e-21,43;CL:0000514,1.70e-21,43;CL:0000680,4.21e-17,58;CL:0000056,4.21e-17,58;CL:0000355,4.21e-17,58;CL:0000187,6.14e-17,55;CL:0000393,1.34e-14,61;CL:0000211,1.34e-14,61;CL:0002539,7.50e-13,10;CL:0002595,6.64e-12,5;CL:1000306,2.09e-10,4;CL:0002547,2.09e-10,4;CL:0002334,6.56e-10,12;CL:0002594,8.71e-10,4;CL:0000222,1.61e-07,121;CL:0002580,1.74e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;5.17e-17;43!CL:0000355;1.15e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!5.09e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!5.84e-15!63;UBERON:0001015!5.84e-15!63;UBERON:0000383!5.84e-15!63;UBERON:0001134!1.25e-14!61;UBERON:0002036!1.25e-14!61;UBERON:0003082!1.25e-14!61;UBERON:0004290!3.25e-14!70;UBERON:0000914!1.77e-13!83;UBERON:0002329!1.77e-13!83;UBERON:0003077!1.77e-13!83;UBERON:0003059!1.77e-13!83;UBERON:0007282!1.77e-13!83;UBERON:0009618!1.77e-13!83;UBERON:0007285!1.77e-13!83;UBERON:0001637!3.83e-13!42;UBERON:0003509!3.83e-13!42;UBERON:0004572!3.83e-13!42;UBERON:0004573!3.50e-12!33;UBERON:0004571!3.50e-12!33;UBERON:0000486!7.35e-12!82;UBERON:0004872!1.12e-08!84;UBERON:0001981!5.64e-08!60;UBERON:0007500!5.64e-08!60;UBERON:0004537!5.64e-08!60;UBERON:0006965!5.64e-08!60;UBERON:0000475!1.24e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.77e-22;33!UBERON:0004571;3.77e-22;33!UBERON:0001637;8.69e-20;42!UBERON:0003509;8.69e-20;42!UBERON:0004572;8.69e-20;42!UBERON:0000947;4.27e-13;21!UBERON:0010191;4.27e-13;21!UBERON:0004237;5.65e-13;10!UBERON:0004695;5.65e-13;10!UBERON:0002111;5.65e-13;10!UBERON:0004178;5.65e-13;10!UBERON:0003834;8.04e-12;5!UBERON:0001533;8.04e-12;5!UBERON:0004797;2.14e-10;4!UBERON:0000415;2.14e-10;4!UBERON:0007240;2.14e-10;4!UBERON:0005742;2.14e-10;4!UBERON:0005734;2.14e-10;4!UBERON:0004664;2.14e-10;4!UBERON:0004663;2.14e-10;4!UBERON:0007500;2.94e-10;56!UBERON:0001981;2.94e-10;56!UBERON:0004537;2.94e-10;56!UBERON:0001310;8.09e-10;4!UBERON:0003513;2.72e-08;7!UBERON:0001135;3.93e-08;15!UBERON:0003914;5.15e-07;74!UBERON:0000055;8.41e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,8.01e-30,42;UBERON:0003509,8.01e-30,42;UBERON:0004572,8.01e-30,42;UBERON:0004573,7.13e-25,33;UBERON:0004571,7.13e-25,33;UBERON:0007500,5.89e-19,59;UBERON:0001981,5.89e-19,59;UBERON:0004537,5.89e-19,59;UBERON:0006965,5.89e-19,59;UBERON:0001134,1.26e-18,62;UBERON:0002036,1.26e-18,62;UBERON:0003082,1.26e-18,62;UBERON:0002385,8.44e-18,64;UBERON:0001015,8.44e-18,64;UBERON:0000383,8.44e-18,64;UBERON:0004872,4.36e-16,83;UBERON:0007524,7.11e-16,73;UBERON:0000055,1.90e-15,68;UBERON:0002329,2.74e-15,71;UBERON:0003059,2.74e-15,71;UBERON:0007282,2.74e-15,71;UBERON:0004290,2.74e-15,71;UBERON:0009618,2.74e-15,71;UBERON:0003077,5.70e-15,72;UBERON:0007285,5.70e-15,72;UBERON:0007503,3.04e-13,78;UBERON:0000947,5.12e-13,21;UBERON:0010191,5.12e-13,21;UBERON:0004237,7.50e-13,10;UBERON:0004695,7.50e-13,10;UBERON:0002111,7.50e-13,10;UBERON:0004178,7.50e-13,10;UBERON:0002049,1.57e-12,78;UBERON:0007798,1.57e-12,78;UBERON:0000486,5.27e-12,83;UBERON:0003834,6.64e-12,5;UBERON:0001533,6.64e-12,5;UBERON:0000415,2.09e-10,4;UBERON:0007240,2.09e-10,4;UBERON:0005742,2.09e-10,4;UBERON:0005734,2.09e-10,4;UBERON:0004664,2.09e-10,4;UBERON:0004663,2.09e-10,4;UBERON:0001310,8.71e-10,4;UBERON:0004535,2.18e-09,109;UBERON:0001009,6.13e-09,112;UBERON:0003513,2.39e-08,7;UBERON:0003914,3.01e-08,117;UBERON:0001135,4.69e-08,15;UBERON:0005256,2.34e-07,122 | |||
|phase1_expression=0.181678379270557,1.2846031433459,0.986680828671798,1.0007329835313,0.446961094427288,3.48935409640147,0,0,0,0,0,0,0,0,0,0,1.20538905604795,1.46062018077475,2.43966399395253,0.123121058076788,0.816002764977012,0,0,0,0,0.152826811495903,0.246301768349837,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0.786021525498329,0.205601498999509,0,0,0,0,0.222820913770347,0,0,0,0.128091319725675,0.130059347559878,0.493313713811028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0.221729397462564,0.263504357079378,0.916853528483988,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,3.29239330327907,35.8828880003823,37.001924076597,5.67469411517371,1.12135520028461,0,0,0.622422070799533,0,0.163461903113459,0.151357427644931,0,0,0,0.570471821544449,0.149448680551801,0.469737994575059,0.161872944368132,0,0,0.245668634623536,0,0,0.247266929278557,0,0.718618141816238,0.168336113954066,0.250237039743928,0,0,0.30648779579902,0,0,5.202299434977,0.427114777637135,0.211931901159562,0.300091096084402,0,4.3798891807757,1.67505170698431,2.19409231913646,1.07180705677318,0.504867548488229,0.276149695926898,0.646584227275248,1.42003837006646,0.302256294682921,0.339121184620975,0.193260853163297,0.272746120590835,0,0,0.132529768321485,0.232387885739037,0,0,0.36497735907583,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0.100528972411631,0,0.325808305310325,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0.07333828582095,6.59285750364667,0,0,1.86156681609409,2.08014873822732,0,1.41849132023278,0,0,0,0,0,0,0,2.71295439353627,0,2.89921674427965,0,0,0,0,0,0,0.144781306667579,1.02738161275192,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0.831883446123229,0.356857977594324,0,0.117141414992713,0.300946099727719,2.27407504055985,2.0694614258501,1.99267679560631,1.47495334833363,0.521301686808497,0.195801157462741,0,0.206768026122887,0,0,0,0,0,2.72918588600655,7.82656063769118,1.68396056659844,1.79394808957981,1.02341449813341,2.57366273829772,1.48418066444991,0.308419387605311,1.24293207719189,0.574890092096664,0.519254429183621,0.464841513839837,0.483437798366489,0,0,0.229628896329213,0.728364672026868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0,0,0.574265537996172,0,3.21367859688319,0.290012154876366,0,0,0.137836572484531,0,0.145016693914229,0,0.0890320356467374,0,0,0,0,3.253918845081,27.073861827435,4.8792608911242,0,1.06461206063404,4.34966496037536,4.07713282028624,1.14499909393593,0,0.316379424718726,0.190630193923825,0.255897791311334,0.42793898803392,4.45484547096312,0.78494864019923,0.179872457583315,0.274537029736055,0.589062011728432,0.202182481573316,1.58510321173008,0.842516912477962,0,3.41198885483798,4.22600587027022,0.9554993798559,0.424216295861138,4.52032466480971,4.41092274836899,3.98063385144732,3.94605796728386,0,0,4.26111791621678,7.74558745249375,3.94373843545138,0.860468113224309,0.196498082026242,2.1400263088875,3.19284957663538,0.211107635297664,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0.846458889008016,0,0,0,0,0,0,0,0,0,0,1.6227340708559,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.984685914873589,0.445234820091624,0,0,0.597743964753209,0.552567831062295,5.03865495708552,0.306806047506464,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0.692552326534174,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0.216388639742091,0.995261931078505,0.176915129006678,0,0,0,0,0,1.60515529459758,0,0,0,0,0,1.20990716048664,0.91821828489147,0.189559738885464,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0.685209623233754,2.18586072873289,0,0,0.64127056201227,0,0.19980960958213,0,0,1.02956998717179,0,1.49103042678519,0,0.543616824294456,0.313808538937,0,0,0,0.136905378891993,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0.254019996197353,0,1.22583065500418,0.482259445395058,0.550157746388935,0.415440338029185,0,0,0.364497339948148,0,0.236417121897595,0.83927341015997,0.844802692155252,0,0.575745591958336,0.714695326373367,0,0,1.62899880526114,7.77799342081141,0.979762080328227,0,0.246277562248017,12.6087136121212,0.339936274560377,0,0,0,0.79339561045614,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,0.110929051536852,0.0620964029413835,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0,2.77402930751307,0.378806010550178,0,0.889811221596536,0.915360273587694,3.17584939902802,0.932623203496683,0.443565449968902,2.54874827461924,0.449803112163605,0.310525913752519,2.07353103920428,10.1019851532038,0.521745061811734,0.751288044986092,6.85449381903832,6.91680246447925,0.545545977607678,0.966695013382396,1.39210127963548,0.398095888698616,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0.530067437837643,1.92914038270915,0.337884881306145,0,0,0,0.138258436151731,0.389720617678777,0.930053882193542,0.490696182767533,0.327609848846413,0,0,0.79994958341972,0,0,0,0.368211900503681,0,0,0,0,0,0,1.18812770967818,2.12574920101683,0.123935764259002,0,0.636008701306837,0,1.60114149657094,1.05802783107205,0,0.128458450192919,0,0,0,1.51243017733031,0,0.161475645631851,0,0,0,0,0.231051332300676,0,0.690359926060101,0.397832444232549,0.376051641746286,0,0.781514011233092,0,0,0,0.0675375846183947,0,0,0,3.28184885410932,0,1.48863353516788,0,0,0,0,0.606965604236632,0.91064876540519,0.0887023701626388,2.30467975111558,0,0.0679697329768317,0.0657727735628491,0,0,0.156986185701028,0.157115589916002,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0.946656005844523,2.13033511897894,0,0,0,0,0,0,0,0,0,3.4794432940146,0.485710993059139,0,0.397901550322736,0.118920090777569,0.33883824611688,0,0,0.0771741581079447,1.96703604453562,0,0.245148321753905,0,0.392616934229891,0,0.4226557275834,1.18948980281472,0,0.0644578879735772,0,0,4.58763333230399,0,0,0,0,0,0.271965960763659,3.05445483238264,1.0580536810308,0.371995018166751,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0.23806443146374,0.129177819672012,0.558672428662721,1.23345048838675,0.0636471582781649,0,0,0.684466602170562,0.0673520530145875,0.358611026963382,0.99798106963804,0.244209805832924,0,0,0,0,5.37862354404612,0,0,0,0 | |||
|short_description=p4@SAMD3 | |||
}} |
Latest revision as of 17:33, 24 September 2015
Short description: | p4@SAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SAMD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -424bp_to_ENST00000368134, uc003qbx.2_5end |
EntrezGene: | SAMD3 |
HGNC: | 21574 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.34e-28 | 32 |
smooth muscle cell | 1.70e-21 | 43 |
smooth muscle myoblast | 1.70e-21 | 43 |
muscle precursor cell | 4.21e-17 | 58 |
myoblast | 4.21e-17 | 58 |
multi-potent skeletal muscle stem cell | 4.21e-17 | 58 |
muscle cell | 6.14e-17 | 55 |
electrically responsive cell | 1.34e-14 | 61 |
electrically active cell | 1.34e-14 | 61 |
aortic smooth muscle cell | 7.50e-13 | 10 |
smooth muscle cell of the subclavian artery | 6.64e-12 | 5 |
fibroblast of tunica adventitia of artery | 2.09e-10 | 4 |
fibroblast of the aortic adventitia | 2.09e-10 | 4 |
preadipocyte | 6.56e-10 | 12 |
smooth muscle cell of the umbilical artery | 8.71e-10 | 4 |
mesodermal cell | 1.61e-07 | 121 |
preadipocyte of the breast | 1.74e-07 | 3 |