FFCP PHASE1:Hg19::chr20:19956287..19956383,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54453 | |EntrezGene=54453 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=18750 | |HGNC=18750 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYP3 | |UniProt=Q8WYP3 | ||
|association_with_transcript=345bp_to_M37190_5end | |association_with_transcript=345bp_to_M37190_5end | ||
|cluster_id=chr20:19956287..19956383,+ | |||
|description=CAGE_peak_5_at_RIN2_5end | |description=CAGE_peak_5_at_RIN2_5end | ||
|id=chr20:19956287..19956383,+ | |id=chr20:19956287..19956383,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.45e-14!254;CL:0002076!1.14e-12!43;CL:0000055!7.41e-12!180;CL:0000220!1.42e-10!246;CL:0002321!4.86e-10!248;CL:0000077!3.42e-09!19;CL:0000057!2.32e-08!75;CL:0000680!4.75e-08!57;CL:0000056!4.75e-08!57;CL:0000355!4.75e-08!57;CL:0000076!1.18e-07!62;CL:0000222!1.83e-07!119;CL:0000187!1.87e-07!54;CL:0000223!2.72e-07!59;CL:0000359!8.95e-07!32 | |ontology_enrichment_celltype=CL:0000066!2.45e-14!254;CL:0002076!1.14e-12!43;CL:0000055!7.41e-12!180;CL:0000220!1.42e-10!246;CL:0002321!4.86e-10!248;CL:0000077!3.42e-09!19;CL:0000057!2.32e-08!75;CL:0000680!4.75e-08!57;CL:0000056!4.75e-08!57;CL:0000355!4.75e-08!57;CL:0000076!1.18e-07!62;CL:0000222!1.83e-07!119;CL:0000187!1.87e-07!54;CL:0000223!2.72e-07!59;CL:0000359!8.95e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002076;4.57e-11;42!CL:0000077;2.93e-10;19!CL:0000359;4.20e-07;32!CL:0002368;4.41e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.84e-16,253;CL:0002076,3.27e-14,42;CL:0002321,3.92e-10,250;CL:0000077,3.94e-10,19;CL:0000223,2.04e-08,58;CL:0000680,2.82e-08,58;CL:0000056,2.82e-08,58;CL:0000355,2.82e-08,58;CL:0000187,1.24e-07,55;CL:0000076,2.33e-07,63;CL:0000057,2.66e-07,76;CL:0000222,2.96e-07,121;CL:0002368,3.33e-07,13;CL:0000359,3.43e-07,32;CL:0002251,8.18e-07,20 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.07e-10!106;DOID:1749!1.21e-08!14;DOID:0050687!2.38e-08!143 | |ontology_enrichment_disease=DOID:305!1.07e-10!106;DOID:1749!1.21e-08!14;DOID:0050687!2.38e-08!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.57e-09;14!DOID:120;1.96e-07;27!DOID:193;9.05e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.06e-13,106;DOID:0050687,3.98e-10,143;DOID:1749,2.49e-09,14;DOID:120,1.32e-07,27;DOID:193,5.48e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.68e-13!238;UBERON:0009142!1.68e-13!238;UBERON:0000481!1.81e-13!347;UBERON:0000468!3.00e-12!659;UBERON:0000480!4.99e-12!626;UBERON:0000467!6.86e-12!625;UBERON:0000475!8.82e-12!365;UBERON:0001004!1.33e-10!72;UBERON:0002050!1.62e-10!605;UBERON:0005423!1.62e-10!605;UBERON:0000923!1.97e-10!604;UBERON:0005291!1.97e-10!604;UBERON:0006598!1.97e-10!604;UBERON:0002532!1.97e-10!604;UBERON:0000062!2.33e-10!511;UBERON:0000922!2.40e-09!612;UBERON:0003102!1.06e-08!95;UBERON:0000926!1.20e-08!448;UBERON:0004120!1.20e-08!448;UBERON:0006603!1.20e-08!448;UBERON:0002100!1.25e-08!216;UBERON:0004119!1.70e-08!169;UBERON:0000925!1.70e-08!169;UBERON:0006595!1.70e-08!169;UBERON:0005256!3.17e-08!143;UBERON:0000486!3.20e-08!82;UBERON:0000914!8.04e-08!83;UBERON:0002329!8.04e-08!83;UBERON:0003077!8.04e-08!83;UBERON:0003059!8.04e-08!83;UBERON:0007282!8.04e-08!83;UBERON:0009618!8.04e-08!83;UBERON:0007285!8.04e-08!83;UBERON:0000119!2.18e-07!312;UBERON:0001007!2.42e-07!155;UBERON:0001555!2.42e-07!155;UBERON:0007026!2.42e-07!155;UBERON:0004290!2.95e-07!70;UBERON:0008947!5.59e-07!38;UBERON:0003258!5.59e-07!38;UBERON:0000483!6.52e-07!309;UBERON:0001134!7.26e-07!61;UBERON:0002036!7.26e-07!61;UBERON:0003082!7.26e-07!61 | |ontology_enrichment_uberon=UBERON:0003104!1.68e-13!238;UBERON:0009142!1.68e-13!238;UBERON:0000481!1.81e-13!347;UBERON:0000468!3.00e-12!659;UBERON:0000480!4.99e-12!626;UBERON:0000467!6.86e-12!625;UBERON:0000475!8.82e-12!365;UBERON:0001004!1.33e-10!72;UBERON:0002050!1.62e-10!605;UBERON:0005423!1.62e-10!605;UBERON:0000923!1.97e-10!604;UBERON:0005291!1.97e-10!604;UBERON:0006598!1.97e-10!604;UBERON:0002532!1.97e-10!604;UBERON:0000062!2.33e-10!511;UBERON:0000922!2.40e-09!612;UBERON:0003102!1.06e-08!95;UBERON:0000926!1.20e-08!448;UBERON:0004120!1.20e-08!448;UBERON:0006603!1.20e-08!448;UBERON:0002100!1.25e-08!216;UBERON:0004119!1.70e-08!169;UBERON:0000925!1.70e-08!169;UBERON:0006595!1.70e-08!169;UBERON:0005256!3.17e-08!143;UBERON:0000486!3.20e-08!82;UBERON:0000914!8.04e-08!83;UBERON:0002329!8.04e-08!83;UBERON:0003077!8.04e-08!83;UBERON:0003059!8.04e-08!83;UBERON:0007282!8.04e-08!83;UBERON:0009618!8.04e-08!83;UBERON:0007285!8.04e-08!83;UBERON:0000119!2.18e-07!312;UBERON:0001007!2.42e-07!155;UBERON:0001555!2.42e-07!155;UBERON:0007026!2.42e-07!155;UBERON:0004290!2.95e-07!70;UBERON:0008947!5.59e-07!38;UBERON:0003258!5.59e-07!38;UBERON:0000483!6.52e-07!309;UBERON:0001134!7.26e-07!61;UBERON:0002036!7.26e-07!61;UBERON:0003082!7.26e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0001004;6.42e-07;65 | |||
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|phase1_expression=2.90685406832891,2.5692062866918,0.986680828671798,1.0007329835313,0.446961094427288,4.36169262050184,0,1.26343974685366,0.261185628199839,1.96587149201207,0.697801167972428,5.46103430325431,1.84636884759917,2.22779435328084,1.32558950291166,1.34465029290355,4.82155622419182,3.65155045193687,4.39139518911456,1.84681587115182,0.816002764977012,1.25381888591235,0.286235987131057,0.136874425072884,0.251085279189606,0,0,0,0,0,0,6.43594857135249,3.614471025339,2.21852406100073,0,0,0,1.10799081706375,0.401088894940283,0.217010870715852,0.895661896959697,1.94336199611388,1.28787783817093,0.872389432677388,1.51150377475524,0.242584061187816,0.464858073811369,0,1.23882548358041,0,0.256160706529101,0,1.72372840368309,1.29096936716765,0,0.376484679085209,0,0.224723484445085,1.53041946185451,0,1.91801137739712,0,0.398927315243264,0,5.5139755339431,0.56738522469114,2.4912889959823,0.502497330513487,0,0,4.84319602106695,0.736555271975129,0.632924774881769,0,0.425208599930087,0.419317291016752,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,4.09160197899297,2.53007406669196,1.50401373190767,2.462390822334,4.7717156823066,3.40644409211845,1.89069634328136,2.21729397462564,1.66886092816939,0.982343066232845,0.364295288292542,0.741568885568859,0.324547393654683,0.348259474598534,0,0,0,0,0.993812036833525,0.860234595106124,2.08284300964557,1.13061588384802,1.25849830862972,0,1.67195973229448,0,0,0,0,0,0.488124115096339,0,0,0.17859945656816,0.22452937262617,0,0,0.949265659568129,0,0,0,1.3082821564276,2.98183171017191,3.67228483827281,1.05927344650575,2.0078563452417,2.83734705758686,3.36406560085384,5.33744978648525,1.48000529050296,1.8672662123986,2.42479209725439,2.7788523529288,1.81628913173918,3.45705554687999,0.468642863667593,1.5608003841516,3.4228309292667,2.39117888882882,0.939475989150119,1.29498355494505,0.842704840213491,1.63323337003915,2.08818339430006,1.34323515528495,2.37600571456411,0.494533858557114,0.910161361938026,2.15585442544872,1.17835279767846,1.50142223846357,2.77064115484183,0.877955241761676,0.919463387397059,0.600952235626387,4.99101605904093,3.22901344239952,1.70845911054854,2.11931901159562,3.90118424909723,3.60683852334536,3.09168648054755,2.41951913231067,7.93248761533951,5.94365731483312,1.7670364197088,2.11714766877288,1.2931684545505,2.84007674013291,3.82857973265033,3.05209066158878,9.08326009867495,9.27336810008838,9.17774705244812,0,0,0,0,0,0,3.12899064659632,1.92972281457866,1.38134921352481,1.85747171212792,0.721879481669586,6.03364680203204,6.74338760312407,5.54325368732009,5.5146986366197,6.10062443458737,4.50814176311084,4.44943316928543,4.90553662813365,2.30848294167834,0,2.80483547606892,3.2925920906512,1.47008711385542,0,0,0,0,7.37930631258681,4.63233087806019,3.84125998930189,3.37205259772859,3.51851403440708,5.09236448371913,0,0,4.3299402607582,0.579652024875384,1.87853910777315,0.288732895522148,0,0,0,0,1.23108503043699,0,1.33768046059855,0.93733833986777,10.4148919483293,6.37987937590739,8.23938408866204,8.4283842169049,2.68367875415648,0,0,0,0.288239906833923,0.25248486685276,0.063497894292169,0,0,0,0.102827492703324,0,0,5.04589879554123,1.30788020649984,8.14054972612545,3.61960804121778,0,0.845302752556,2.39344304926383,2.08014873822732,1.80045161983499,0,2.93064396917709,3.57444984145369,3.25572963234866,2.46972101034231,2.93162565864362,2.48774364119782,4.75171123760058,6.02878754119172,2.61460037580088,5.59848750619519,0,0.502257091432126,6.32501818449095,2.63587341040741,1.14861935834114,5.70547620162874,3.04040744001916,1.84928690295345,5.01370697071708,0,0,0,0,0.254094624222463,0,0.773288812777695,0.167516265334349,0,0,0,0,2.20844685094452,2.00068208423871,2.17012018959788,2.28767947683888,2.49800584316026,1.10391690523754,1.87426263988341,0.601892199455438,0,1.03473071292505,7.97070718242524,2.39679919104214,0.0868836144680828,0.391602314925481,0.343143423810856,0,0,0.106727557803444,1.5156378572313,3.32870879020994,1.81434175997808,2.97729369382532,4.910783145218,1.96462066103151,1.66580894032411,3.58195074346692,1.28683136914886,4.45254199334973,5.08891989548763,3.72879623157567,5.58464660893902,1.55776328755086,3.60252173225874,6.16383192917273,4.41114234667227,2.02578175658972,2.87036120411517,3.82391452814106,1.04899531967539,1.35359883872224,1.15523005656622,0.784349769176855,0,1.47772280450026,2.27466768141793,0,4.10240240594065,0,0.812839312631559,0,4.84264918785573,3.3243040357149,2.23874754722178,0,0,4.35965212697862,5.24823433119529,2.92840555197873,1.23649213977267,2.28923662045859,3.30037999682352,4.59412430396938,1.30012049207304,0,2.32009723901093,3.38906957652218,2.91656981979646,2.61889487720608,2.79292636657511,1.45016693914229,2.64202544989913,1.06838442776085,9.42124017557575,6.91884242514382,7.14631189969671,3.6416801107998,0.464845549297286,3.1481234683064,2.0911118104818,5.85263802334569,2.66153015158511,4.34966496037536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| ||
|short_description=p5@RIN2 | |short_description=p5@RIN2 | ||
}} | }} |
Latest revision as of 16:45, 24 September 2015
Short description: | p5@RIN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RIN2_5end |
Coexpression cluster: | NA |
Association with transcript: | 345bp_to_M37190_5end |
EntrezGene: | RIN2 |
HGNC: | 18750 |
UniProt: | Q8WYP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.84e-16 | 253 |
endo-epithelial cell | 3.27e-14 | 42 |
embryonic cell | 3.92e-10 | 250 |
mesothelial cell | 3.94e-10 | 19 |
endodermal cell | 2.04e-08 | 58 |
muscle precursor cell | 2.82e-08 | 58 |
myoblast | 2.82e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.82e-08 | 58 |
muscle cell | 1.24e-07 | 55 |
squamous epithelial cell | 2.33e-07 | 63 |
fibroblast | 2.66e-07 | 76 |
mesodermal cell | 2.96e-07 | 121 |
respiratory epithelial cell | 3.33e-07 | 13 |
vascular associated smooth muscle cell | 3.43e-07 | 32 |
epithelial cell of alimentary canal | 8.18e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 2.29e-10 | 74 |
endoderm-derived structure | 1.18e-08 | 160 |
endoderm | 1.18e-08 | 160 |
presumptive endoderm | 1.18e-08 | 160 |
mesenchyme | 1.66e-08 | 160 |
entire embryonic mesenchyme | 1.66e-08 | 160 |
multilaminar epithelium | 4.56e-08 | 83 |
trunk | 1.40e-07 | 199 |
digestive system | 1.69e-07 | 145 |
digestive tract | 1.69e-07 | 145 |
primitive gut | 1.69e-07 | 145 |
respiratory primordium | 1.89e-07 | 38 |
endoderm of foregut | 1.89e-07 | 38 |
trunk mesenchyme | 2.59e-07 | 122 |
surface structure | 4.36e-07 | 99 |
dense mesenchyme tissue | 8.75e-07 | 73 |
skeletal muscle tissue | 9.10e-07 | 62 |
striated muscle tissue | 9.10e-07 | 62 |
myotome | 9.10e-07 | 62 |
somite | 9.26e-07 | 71 |
presomitic mesoderm | 9.26e-07 | 71 |
presumptive segmental plate | 9.26e-07 | 71 |
dermomyotome | 9.26e-07 | 71 |
trunk paraxial mesoderm | 9.26e-07 | 71 |
paraxial mesoderm | 9.78e-07 | 72 |
presumptive paraxial mesoderm | 9.78e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.06e-13 | 106 |
cell type cancer | 3.98e-10 | 143 |
squamous cell carcinoma | 2.49e-09 | 14 |
female reproductive organ cancer | 1.32e-07 | 27 |
reproductive organ cancer | 5.48e-07 | 29 |