FFCP PHASE1:Hg19::chr6:129204231..129204248,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3908 | |EntrezGene=3908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6482 | |HGNC=6482 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | |UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | ||
|association_with_transcript=-37bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end | |association_with_transcript=-37bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end | ||
|cluster_id=chr6:129204231..129204248,+ | |||
|description=CAGE_peak_4_at_LAMA2_5end | |description=CAGE_peak_4_at_LAMA2_5end | ||
|id=chr6:129204231..129204248,+ | |id=chr6:129204231..129204248,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.83e-22!180;CL:0000057!6.45e-17!75;CL:0000680!4.28e-11!57;CL:0000056!4.28e-11!57;CL:0000355!4.28e-11!57;CL:0002620!5.09e-11!23;CL:0000187!8.51e-10!54;CL:0000183!2.13e-09!59;CL:0000136!5.07e-09!15;CL:0000393!1.69e-07!60;CL:0000211!1.69e-07!60;CL:0002494!4.07e-07!16 | |ontology_enrichment_celltype=CL:0000055!1.83e-22!180;CL:0000057!6.45e-17!75;CL:0000680!4.28e-11!57;CL:0000056!4.28e-11!57;CL:0000355!4.28e-11!57;CL:0002620!5.09e-11!23;CL:0000187!8.51e-10!54;CL:0000183!2.13e-09!59;CL:0000136!5.07e-09!15;CL:0000393!1.69e-07!60;CL:0000211!1.69e-07!60;CL:0002494!4.07e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000136;2.61e-10;13!CL:0002620;5.65e-09;23!CL:0002494;1.34e-07;16!CL:0002334;2.29e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.12e-15,76;CL:0000136,8.82e-12,15;CL:0000680,4.51e-10,58;CL:0000056,4.51e-10,58;CL:0000355,4.51e-10,58;CL:0002620,5.70e-09,23;CL:0000187,1.40e-08,55;CL:0002494,1.70e-07,16;CL:0002334,3.04e-07,12;CL:0000393,6.77e-07,61;CL:0000211,6.77e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.07e-14!83;UBERON:0002329!1.07e-14!83;UBERON:0003077!1.07e-14!83;UBERON:0003059!1.07e-14!83;UBERON:0007282!1.07e-14!83;UBERON:0009618!1.07e-14!83;UBERON:0007285!1.07e-14!83;UBERON:0004290!3.17e-14!70;UBERON:0002385!9.64e-14!63;UBERON:0001015!9.64e-14!63;UBERON:0000383!9.64e-14!63;UBERON:0000475!1.30e-13!365;UBERON:0001134!5.08e-13!61;UBERON:0002036!5.08e-13!61;UBERON:0003082!5.08e-13!61;UBERON:0007100!2.48e-12!27;UBERON:0000486!1.53e-11!82;UBERON:0007023!3.85e-11!115;UBERON:0000948!1.73e-10!24;UBERON:0005498!1.73e-10!24;UBERON:0004140!1.73e-10!24;UBERON:0009881!1.73e-10!24;UBERON:0004141!1.73e-10!24;UBERON:0003084!1.73e-10!24;UBERON:0007005!1.73e-10!24;UBERON:0004139!1.73e-10!24;UBERON:0004291!1.73e-10!24;UBERON:0005256!3.67e-09!143;UBERON:0002100!5.38e-08!216;UBERON:0000468!7.66e-08!659;UBERON:0003102!1.29e-07!95;UBERON:0002199!1.48e-07!45;UBERON:0002416!1.48e-07!45;UBERON:0000481!3.08e-07!347;UBERON:0002097!9.70e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.04e-14;25!UBERON:0000948;7.39e-12;22!UBERON:0001134;4.05e-11;16!UBERON:0002036;4.05e-11;16!UBERON:0002385;6.02e-10;31!UBERON:0001015;6.02e-10;31!UBERON:0000383;6.02e-10;31!UBERON:0004457;2.09e-09;9!UBERON:0000042;2.09e-09;9!UBERON:0003688;6.72e-08;6!UBERON:0002358;6.72e-08;6!UBERON:0003684;6.72e-08;6!UBERON:0001178;6.72e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,1.17e-13,27;UBERON:0002385,1.22e-12,64;UBERON:0001015,1.22e-12,64;UBERON:0000383,1.22e-12,64;UBERON:0001134,2.52e-12,62;UBERON:0002036,2.52e-12,62;UBERON:0003082,2.52e-12,62;UBERON:0000948,2.72e-11,24;UBERON:0005498,2.72e-11,24;UBERON:0004140,2.72e-11,24;UBERON:0009881,2.72e-11,24;UBERON:0004141,2.72e-11,24;UBERON:0003084,2.72e-11,24;UBERON:0007005,2.72e-11,24;UBERON:0004139,2.72e-11,24;UBERON:0004291,2.72e-11,24;UBERON:0002329,7.16e-11,71;UBERON:0003059,7.16e-11,71;UBERON:0007282,7.16e-11,71;UBERON:0004290,7.16e-11,71;UBERON:0009618,7.16e-11,71;UBERON:0003077,1.48e-10,72;UBERON:0007285,1.48e-10,72;UBERON:0007524,3.00e-10,73;UBERON:0000486,1.46e-09,83;UBERON:0007503,1.89e-09,78;UBERON:0005256,5.62e-09,122;UBERON:0003688,7.70e-08,6;UBERON:0002358,7.70e-08,6;UBERON:0003684,7.70e-08,6;UBERON:0001178,7.70e-08,6;UBERON:0002100,1.08e-07,199;UBERON:0000926,1.32e-07,315;UBERON:0004120,1.32e-07,315;UBERON:0006603,1.32e-07,315;UBERON:0004457,1.36e-07,12;UBERON:0000042,1.36e-07,12;UBERON:0002199,4.44e-07,46;UBERON:0002416,4.44e-07,46;UBERON:0003104,7.10e-07,160;UBERON:0009142,7.10e-07,160 | |||
|phase1_expression=8.3572054464456,3.21150785836475,7.04772020479856,7.00513088471913,7.15137751083661,6.10636966870258,0,3.15859936713415,2.61185628199839,0,1.39560233594486,0,0,0.37129905888014,0.331397375727916,0,0,0,0,0.123121058076788,0.408001382488506,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,0.670700859703636,1.53435074212236,1.0843174571537,1.50401373190767,1.59331170856906,3.1811437882044,2.43317435151318,0.567208902984407,0,0,1.17881167947941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0.258416759169329,0,1.00416183829401,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,6.95760732373446,1.01304409331664,6.48804985984772,12.6208113129478,0.709336764396714,1.12135520028461,0,1.2333377420858,7.78027588499416,2.42479209725439,2.45192854670188,4.23800797405808,5.18558332031999,0.70296429550139,0.936480230490962,0.570471821544449,2.09228152772521,0.822041490506354,0.485618833104395,0.140450806702248,0.816616685019573,0.122834317311768,1.75653827998801,2.37600571456411,0.741800787835671,0,0,0.168336113954066,0.500474079487857,1.6623846929051,1.75591048352335,1.22595118319608,1.20190447125277,0.113432183160021,2.33206526395521,3.41691822109708,4.87443372666992,3.90118424909723,1.95799805553034,5.92573242104947,3.16398655763703,5.06328996723799,1.75386609290158,3.02920529092937,3.12969655383818,4.84938170456436,5.68015348026583,1.61203357164224,1.18692414617341,0,0,0,0.121973706129595,0,0.116193942869518,0.207322110030741,0,0,0,0.643240938192885,2.76269842704961,3.25057549622385,2.88751792667834,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.115930404975077,1.40890433082986,0.288732895522148,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,3.4214489204541,0,0,0,0.897048674762886,0.43596006883328,0.66004457238855,1.93907573636667,7.15312891703765,0,2.6593811658487,0,0.257207374262142,0,0,2.7165818795048,1.08524321078289,0,0.325736184293735,3.55391948742546,0.791951872933429,0.904318131178758,0.871533458600294,0.499864955910285,0,0,0,0,0,4.27910715122155,2.31650090668127,1.84928690295345,3.40215830155802,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.981531933753119,0,1.08506009479894,0.207970861530807,1.42743191037729,3.15404830067869,5.62278791965023,2.10662269809403,2.27407504055985,2.0694614258501,0.664225598535437,0.737476674166813,1.39013783148933,1.37060810223918,0.343143423810856,0,0,0,0,0,0,3.96972492510043,8.44040853084343,4.49056151092918,5.12556597022804,6.14048698880044,3.37793234401576,0,0.308419387605311,1.42049380250502,1.39616165223476,3.11552657510173,1.16210378459959,0,0,0,1.60740227430449,2.36718518408732,3.54035920390445,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.650756789328606,1.64865618636356,0,0,0,0,6.42735719376638,2.12675580242668,0.770243085573222,1.38153307253517,1.24052915236078,4.18938954986267,3.62541734785571,1.44885266607372,3.20515328328254,0,0,0,0,0,20.147990197161,2.7881490806424,1.23213432070436,0,0.869932992075073,1.11194531462352,1.5743737541619,3.34942532423701,1.58189712359363,1.5250415513906,0,8.55877976067841,4.77304871888905,0.78494864019923,1.79872457583315,2.74537029736055,2.12062324222236,1.2130948894399,1.58510321173008,0.421258456238981,0.48763373908959,0.974853958525138,0,2.45699840534374,3.67654123079653,1.13008116620243,0.551365343546124,1.32687795048244,1.31535265576129,0,1.9676842561399,0,0.30982349809975,0,0.717056761020258,0.687743287091848,0,2.83808851256478,1.47775344708365,3.62224382255892,0,1.04980416073495,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36968812325356,0,0,0,0,0,0,0,0.140669416410513,0,0,0,3.58646378851925,1.10513566212459,0,0.715880777515084,0,1.86623752597084,0,0,0,2.56472854656027,0,0,0,0.556608588971108,0,0,0,1.44999915086959,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,1.10579259931225,0,0.658156191461918,0,0,4.69396576873162,0,0,0,0,0.31900115973192,1.00757352742049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23840590304675,1.22206028986725,0,0,0,0.202203398942031,2.40773294189637,0.234264445725339,0,0,0,1.97292201424695,0,0,1.5796644907122,0,0,0,0,0,0,1.13843818411917,0.138674673013139,0,0,0,3.14508002835654,0.171986032471617,0,0,0,2.03676934625681,0,0.677942222341597,0,0.19871461170299,0.823040347426423,0,0.240476460754601,1.70762395791482,0,0,0.229073192331831,0,0,0,0,1.22313785466253,0.627617077873999,0,0,1.20084057741958,0.684526894459965,0,0,0,3.35138881526705,2.06244381610515,2.87149209830726,2.59582700648688,3.86303443322914,4.01708623395371,6.58398030369917,6.84569778730567,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0.394028536495991,1.41627387964495,0,0,0,1.42939065274673,3.31045985182716,0,1.08599920350743,0,3.919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| ||
|short_description=p4@LAMA2 | |short_description=p4@LAMA2 | ||
}} | }} |
Latest revision as of 16:03, 24 September 2015
Short description: | p4@LAMA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAMA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -37bp_to_ENST00000354729, ENST00000358023, NM_000426, NM_001079823, uc003qbn.2, uc003qbo.2_5end |
EntrezGene: | LAMA2 |
HGNC: | 6482 |
UniProt: | F8WAH5A6NGS5P24043Q59H37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.12e-15 | 76 |
fat cell | 8.82e-12 | 15 |
muscle precursor cell | 4.51e-10 | 58 |
myoblast | 4.51e-10 | 58 |
multi-potent skeletal muscle stem cell | 4.51e-10 | 58 |
skin fibroblast | 5.70e-09 | 23 |
muscle cell | 1.40e-08 | 55 |
cardiocyte | 1.70e-07 | 16 |
preadipocyte | 3.04e-07 | 12 |
electrically responsive cell | 6.77e-07 | 61 |
electrically active cell | 6.77e-07 | 61 |