FFCP PHASE1:Hg19::chr4:110223806..110223821,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84570 | |EntrezGene=84570 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18603 | |HGNC=18603 | ||
|TSSclassifier=strong | |||
|UniProt=D6R8Y2 | |UniProt=D6R8Y2 | ||
|association_with_transcript=0bp_to_ENST00000505591_5end | |association_with_transcript=0bp_to_ENST00000505591_5end | ||
|cluster_id=chr4:110223806..110223821,- | |||
|coexpression_cluster_id=C53 | |coexpression_cluster_id=C53 | ||
|description=CAGE_peak_1_at_COL25A1_5end | |description=CAGE_peak_1_at_COL25A1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.84e-28!115;UBERON:0000073!5.06e-21!94;UBERON:0001016!5.06e-21!94;UBERON:0005743!5.75e-20!86;UBERON:0003080!7.03e-19!42;UBERON:0001049!8.54e-19!57;UBERON:0005068!8.54e-19!57;UBERON:0006241!8.54e-19!57;UBERON:0007135!8.54e-19!57;UBERON:0001017!8.83e-19!82;UBERON:0002346!9.95e-19!90;UBERON:0002780!3.78e-18!41;UBERON:0001890!3.78e-18!41;UBERON:0006240!3.78e-18!41;UBERON:0003075!7.73e-18!86;UBERON:0007284!7.73e-18!86;UBERON:0002616!1.95e-17!59;UBERON:0003056!2.51e-17!61;UBERON:0000955!1.13e-16!69;UBERON:0006238!1.13e-16!69;UBERON:0001893!2.37e-15!34;UBERON:0002020!6.21e-15!34;UBERON:0003528!6.21e-15!34;UBERON:0001869!8.34e-15!32;UBERON:0002791!9.35e-15!33;UBERON:0000924!2.74e-13!173;UBERON:0006601!2.74e-13!173;UBERON:0004121!1.62e-12!169;UBERON:0000153!1.27e-11!129;UBERON:0007811!1.27e-11!129;UBERON:0000956!7.79e-11!25;UBERON:0000203!7.79e-11!25;UBERON:0000033!7.88e-11!123;UBERON:0002619!8.12e-10!22;UBERON:0000119!3.48e-09!312;UBERON:0000483!4.95e-09!309;UBERON:0001950!1.60e-08!20;UBERON:0000475!6.17e-08!365;UBERON:0000468!1.36e-07!659;UBERON:0000481!6.72e-07!347 | |ontology_enrichment_uberon=UBERON:0007023!1.84e-28!115;UBERON:0000073!5.06e-21!94;UBERON:0001016!5.06e-21!94;UBERON:0005743!5.75e-20!86;UBERON:0003080!7.03e-19!42;UBERON:0001049!8.54e-19!57;UBERON:0005068!8.54e-19!57;UBERON:0006241!8.54e-19!57;UBERON:0007135!8.54e-19!57;UBERON:0001017!8.83e-19!82;UBERON:0002346!9.95e-19!90;UBERON:0002780!3.78e-18!41;UBERON:0001890!3.78e-18!41;UBERON:0006240!3.78e-18!41;UBERON:0003075!7.73e-18!86;UBERON:0007284!7.73e-18!86;UBERON:0002616!1.95e-17!59;UBERON:0003056!2.51e-17!61;UBERON:0000955!1.13e-16!69;UBERON:0006238!1.13e-16!69;UBERON:0001893!2.37e-15!34;UBERON:0002020!6.21e-15!34;UBERON:0003528!6.21e-15!34;UBERON:0001869!8.34e-15!32;UBERON:0002791!9.35e-15!33;UBERON:0000924!2.74e-13!173;UBERON:0006601!2.74e-13!173;UBERON:0004121!1.62e-12!169;UBERON:0000153!1.27e-11!129;UBERON:0007811!1.27e-11!129;UBERON:0000956!7.79e-11!25;UBERON:0000203!7.79e-11!25;UBERON:0000033!7.88e-11!123;UBERON:0002619!8.12e-10!22;UBERON:0000119!3.48e-09!312;UBERON:0000483!4.95e-09!309;UBERON:0001950!1.60e-08!20;UBERON:0000475!6.17e-08!365;UBERON:0000468!1.36e-07!659;UBERON:0000481!6.72e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;7.48e-14;32!UBERON:0002791;5.67e-13;32!UBERON:0002780;2.99e-12;41!UBERON:0001890;2.99e-12;41!UBERON:0001893;7.39e-12;34!UBERON:0003528;1.43e-11;34!UBERON:0002020;1.43e-11;34!UBERON:0002619;3.52e-11;22!UBERON:0000956;1.53e-10;25!UBERON:0000203;1.53e-10;25!UBERON:0001950;2.28e-09;20!UBERON:0000922;2.57e-09;49!UBERON:0000073;2.00e-07;53!UBERON:0002616;2.00e-07;53!UBERON:0001017;3.92e-07;75!UBERON:0007023;4.09e-07;114 | |ontology_enrichment_uberon_v019=UBERON:0001869;7.48e-14;32!UBERON:0002791;5.67e-13;32!UBERON:0002780;2.99e-12;41!UBERON:0001890;2.99e-12;41!UBERON:0001893;7.39e-12;34!UBERON:0003528;1.43e-11;34!UBERON:0002020;1.43e-11;34!UBERON:0002619;3.52e-11;22!UBERON:0000956;1.53e-10;25!UBERON:0000203;1.53e-10;25!UBERON:0001950;2.28e-09;20!UBERON:0000922;2.57e-09;49!UBERON:0000073;2.00e-07;53!UBERON:0002616;2.00e-07;53!UBERON:0001017;3.92e-07;75!UBERON:0007023;4.09e-07;114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.39e-21,114;UBERON:0003056,3.15e-16,61;UBERON:0002780,5.63e-16,41;UBERON:0001890,5.63e-16,41;UBERON:0003080,5.63e-16,41;UBERON:0006240,5.63e-16,41;UBERON:0002346,1.79e-15,86;UBERON:0001869,3.02e-15,32;UBERON:0003075,9.83e-15,82;UBERON:0007284,9.83e-15,82;UBERON:0001893,5.85e-14,34;UBERON:0002791,8.94e-14,32;UBERON:0001049,1.20e-12,56;UBERON:0005068,1.20e-12,56;UBERON:0006241,1.20e-12,56;UBERON:0007135,1.20e-12,56;UBERON:0003528,1.35e-12,34;UBERON:0002020,1.35e-12,34;UBERON:0000955,4.32e-12,68;UBERON:0006238,4.32e-12,68;UBERON:0001016,9.20e-12,89;UBERON:0000073,1.23e-11,53;UBERON:0002616,1.23e-11,53;UBERON:0001017,1.28e-11,81;UBERON:0010371,1.56e-11,104;UBERON:0002619,2.41e-11,22;UBERON:0000956,1.08e-10,25;UBERON:0000203,1.08e-10,25;UBERON:0001950,1.59e-09,20;UBERON:0004121,3.15e-09,171;UBERON:0000924,3.15e-09,171;UBERON:0006601,3.15e-09,171;UBERON:0010314,2.76e-08,132;UBERON:0000349,8.47e-07,5 | |||
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| ||
|short_description=p1@COL25A1 | |short_description=p1@COL25A1 | ||
}} | }} |
Latest revision as of 15:56, 24 September 2015
Short description: | p1@COL25A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL25A1_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | 0bp_to_ENST00000505591_5end |
EntrezGene: | COL25A1 |
HGNC: | 18603 |
UniProt: | D6R8Y2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 8.39e-21 | 114 |
pre-chordal neural plate | 3.15e-16 | 61 |
regional part of forebrain | 5.63e-16 | 41 |
forebrain | 5.63e-16 | 41 |
anterior neural tube | 5.63e-16 | 41 |
future forebrain | 5.63e-16 | 41 |
neurectoderm | 1.79e-15 | 86 |
cerebral hemisphere | 3.02e-15 | 32 |
neural plate | 9.83e-15 | 82 |
presumptive neural plate | 9.83e-15 | 82 |
telencephalon | 5.85e-14 | 34 |
regional part of telencephalon | 8.94e-14 | 32 |
neural tube | 1.20e-12 | 56 |
neural rod | 1.20e-12 | 56 |
future spinal cord | 1.20e-12 | 56 |
neural keel | 1.20e-12 | 56 |
brain grey matter | 1.35e-12 | 34 |
gray matter | 1.35e-12 | 34 |
brain | 4.32e-12 | 68 |
future brain | 4.32e-12 | 68 |
nervous system | 9.20e-12 | 89 |
regional part of nervous system | 1.23e-11 | 53 |
regional part of brain | 1.23e-11 | 53 |
central nervous system | 1.28e-11 | 81 |
ecto-epithelium | 1.56e-11 | 104 |
regional part of cerebral cortex | 2.41e-11 | 22 |
cerebral cortex | 1.08e-10 | 25 |
pallium | 1.08e-10 | 25 |
neocortex | 1.59e-09 | 20 |
ectoderm-derived structure | 3.15e-09 | 171 |
ectoderm | 3.15e-09 | 171 |
presumptive ectoderm | 3.15e-09 | 171 |
structure with developmental contribution from neural crest | 2.76e-08 | 132 |
limbic system | 8.47e-07 | 5 |