FFCP PHASE1:Hg19::chr5:133512634..133512652,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6500 | |EntrezGene=6500 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10899 | |HGNC=10899 | ||
|TSSclassifier=strong | |||
|UniProt=F8W8N3,E5RHM3,E7ERH2,E5RGM4 | |UniProt=F8W8N3,E5RHM3,E7ERH2,E5RGM4 | ||
|association_with_transcript=0bp_to_ENST00000328392,ENST00000519054,ENST00000519321,ENST00000522855,ENST00000523966,ENST00000524288_5end | |association_with_transcript=0bp_to_ENST00000328392,ENST00000519054,ENST00000519321,ENST00000522855,ENST00000523966,ENST00000524288_5end | ||
|cluster_id=chr5:133512634..133512652,- | |||
|description=CAGE_peak_1_at_SKP1_5end | |description=CAGE_peak_1_at_SKP1_5end | ||
|id=chr5:133512634..133512652,- | |id=chr5:133512634..133512652,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.85e-14!115;UBERON:0001049!3.84e-11!57;UBERON:0005068!3.84e-11!57;UBERON:0006241!3.84e-11!57;UBERON:0007135!3.84e-11!57;UBERON:0001017!4.60e-11!82;UBERON:0005743!6.37e-11!86;UBERON:0002780!1.08e-10!41;UBERON:0001890!1.08e-10!41;UBERON:0006240!1.08e-10!41;UBERON:0002616!1.33e-10!59;UBERON:0003080!3.02e-10!42;UBERON:0000955!1.54e-09!69;UBERON:0006238!1.54e-09!69;UBERON:0002020!1.21e-08!34;UBERON:0003528!1.21e-08!34;UBERON:0000073!1.36e-08!94;UBERON:0001016!1.36e-08!94;UBERON:0001893!3.47e-08!34;UBERON:0002791!7.45e-08!33;UBERON:0001869!7.73e-08!32;UBERON:0000033!1.26e-07!123;UBERON:0003075!2.23e-07!86;UBERON:0007284!2.23e-07!86;UBERON:0000153!3.77e-07!129;UBERON:0007811!3.77e-07!129;UBERON:0000477!4.69e-07!286;UBERON:0003056!7.97e-07!61 | |ontology_enrichment_uberon=UBERON:0007023!1.85e-14!115;UBERON:0001049!3.84e-11!57;UBERON:0005068!3.84e-11!57;UBERON:0006241!3.84e-11!57;UBERON:0007135!3.84e-11!57;UBERON:0001017!4.60e-11!82;UBERON:0005743!6.37e-11!86;UBERON:0002780!1.08e-10!41;UBERON:0001890!1.08e-10!41;UBERON:0006240!1.08e-10!41;UBERON:0002616!1.33e-10!59;UBERON:0003080!3.02e-10!42;UBERON:0000955!1.54e-09!69;UBERON:0006238!1.54e-09!69;UBERON:0002020!1.21e-08!34;UBERON:0003528!1.21e-08!34;UBERON:0000073!1.36e-08!94;UBERON:0001016!1.36e-08!94;UBERON:0001893!3.47e-08!34;UBERON:0002791!7.45e-08!33;UBERON:0001869!7.73e-08!32;UBERON:0000033!1.26e-07!123;UBERON:0003075!2.23e-07!86;UBERON:0007284!2.23e-07!86;UBERON:0000153!3.77e-07!129;UBERON:0007811!3.77e-07!129;UBERON:0000477!4.69e-07!286;UBERON:0003056!7.97e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.20e-07;34!UBERON:0002020;1.20e-07;34!UBERON:0002780;1.24e-07;41!UBERON:0001890;1.24e-07;41!UBERON:0001893;2.28e-07;34!UBERON:0001869;3.33e-07;32!UBERON:0002791;4.06e-07;32!UBERON:0000073;7.18e-07;53!UBERON:0002616;7.18e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.37e-14,114;UBERON:0001049,1.59e-11,56;UBERON:0005068,1.59e-11,56;UBERON:0006241,1.59e-11,56;UBERON:0007135,1.59e-11,56;UBERON:0001017,2.35e-11,81;UBERON:0010314,5.58e-11,132;UBERON:0000073,8.03e-11,53;UBERON:0002616,8.03e-11,53;UBERON:0002780,1.08e-10,41;UBERON:0001890,1.08e-10,41;UBERON:0003080,1.08e-10,41;UBERON:0006240,1.08e-10,41;UBERON:0000955,7.83e-10,68;UBERON:0006238,7.83e-10,68;UBERON:0001016,7.14e-09,89;UBERON:0003075,1.12e-08,82;UBERON:0007284,1.12e-08,82;UBERON:0003528,1.21e-08,34;UBERON:0002020,1.21e-08,34;UBERON:0001893,3.47e-08,34;UBERON:0001869,7.73e-08,32;UBERON:0002791,9.39e-08,32;UBERON:0002346,1.43e-07,86;UBERON:0003056,3.01e-07,61 | |||
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6,211.941304651351,294.923012918974 | ||
|short_description=p1@SKP1 | |short_description=p1@SKP1 | ||
}} | }} |
Latest revision as of 08:16, 20 September 2015
Short description: | p1@SKP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SKP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000328392, ENST00000519054, ENST00000519321, ENST00000522855, ENST00000523966, ENST00000524288_5end |
EntrezGene: | SKP1 |
HGNC: | 10899 |
UniProt: | F8W8N3E5RHM3E7ERH2E5RGM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.37e-14 | 114 |
neural tube | 1.59e-11 | 56 |
neural rod | 1.59e-11 | 56 |
future spinal cord | 1.59e-11 | 56 |
neural keel | 1.59e-11 | 56 |
central nervous system | 2.35e-11 | 81 |
structure with developmental contribution from neural crest | 5.58e-11 | 132 |
regional part of nervous system | 8.03e-11 | 53 |
regional part of brain | 8.03e-11 | 53 |
regional part of forebrain | 1.08e-10 | 41 |
forebrain | 1.08e-10 | 41 |
anterior neural tube | 1.08e-10 | 41 |
future forebrain | 1.08e-10 | 41 |
brain | 7.83e-10 | 68 |
future brain | 7.83e-10 | 68 |
nervous system | 7.14e-09 | 89 |
neural plate | 1.12e-08 | 82 |
presumptive neural plate | 1.12e-08 | 82 |
brain grey matter | 1.21e-08 | 34 |
gray matter | 1.21e-08 | 34 |
telencephalon | 3.47e-08 | 34 |
cerebral hemisphere | 7.73e-08 | 32 |
regional part of telencephalon | 9.39e-08 | 32 |
neurectoderm | 1.43e-07 | 86 |
pre-chordal neural plate | 3.01e-07 | 61 |