FFCP PHASE1:Hg19::chr12:7052974..7052985,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=113246 | |EntrezGene=113246 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34033,29521 | |HGNC=34033,29521 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000458811,ENST00000544681_5end | |association_with_transcript=0bp_to_ENST00000458811,ENST00000544681_5end | ||
|cluster_id=chr12:7052974..7052985,+ | |||
|coexpression_cluster_id=C898 | |coexpression_cluster_id=C898 | ||
|description=CAGE_peak_1_at_RNU7-1_5end,CAGE_peak_4_at_C12orf57_5end | |description=CAGE_peak_1_at_RNU7-1_5end,CAGE_peak_4_at_C12orf57_5end | ||
|id=chr12:7052974..7052985,+ | |id=chr12:7052974..7052985,+ | ||
|ontology_enrichment_celltype=CL:0000860;2.00e-21;33!CL:0002057;2.00e-21;33!CL:0000576;8.97e-15;48!CL:0000473;4.59e-14;39!CL:0000234;4.59e-14;39!CL:0000766;5.02e-11;69!CL:0002087;1.69e-10;104!CL:0000738;2.76e-07;136 | |ontology_enrichment_celltype=CL:0002057!1.66e-21!42;CL:0002031!3.72e-21!124;CL:0000738!9.54e-21!140;CL:0000860!1.52e-20!45;CL:0002087!1.75e-19!119;CL:0000037!2.64e-19!172;CL:0000566!2.64e-19!172;CL:0002032!2.20e-18!165;CL:0000837!2.20e-18!165;CL:0000988!3.20e-16!182;CL:0000839!5.88e-14!70;CL:0000557!8.54e-14!71;CL:0002009!2.96e-13!65;CL:0000766!9.59e-13!76;CL:0002194!2.38e-12!63;CL:0000576!2.38e-12!63;CL:0000040!2.38e-12!63;CL:0000559!2.38e-12!63;CL:0000763!2.62e-11!112;CL:0000049!2.62e-11!112;CL:0000542!2.44e-07!53;CL:0000051!2.44e-07!53;CL:0000838!5.50e-07!52 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;2.00e-21;33!CL:0002057;2.00e-21;33!CL:0000576;8.97e-15;48!CL:0000473;4.59e-14;39!CL:0000234;4.59e-14;39!CL:0000766;5.02e-11;69!CL:0002087;1.69e-10;104!CL:0000738;2.76e-07;136 | ||
|ontology_enrichment_celltype_v019_2=CL:0002031,1.30e-29,120;CL:0000738,2.75e-29,136;CL:0000860,8.32e-29,42;CL:0002057,8.32e-29,42;CL:0002087,2.89e-27,115;CL:0000037,1.83e-25,168;CL:0002032,2.21e-24,161;CL:0000837,2.21e-24,161;CL:0000473,7.05e-24,48;CL:0000234,7.05e-24,48;CL:0000988,2.67e-22,177;CL:0000557,1.10e-20,67;CL:0000766,4.88e-20,72;CL:0000839,6.14e-20,66;CL:0002009,2.78e-19,61;CL:0002194,5.50e-18,59;CL:0000576,5.50e-18,59;CL:0000040,5.50e-18,59;CL:0000559,5.50e-18,59;CL:0000763,9.94e-15,108;CL:0000049,9.94e-15,108;CL:0000542,1.78e-09,53;CL:0000051,1.78e-09,53;CL:0000838,5.40e-09,52;CL:0002393,5.89e-07,9;CL:0002397,5.89e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;4.54e-21;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.21e-11!80;UBERON:0001474!4.13e-10!86;UBERON:0002390!7.55e-09!102;UBERON:0003061!7.55e-09!102;UBERON:0002405!9.35e-08!115;UBERON:0004765!1.00e-07!101;UBERON:0001434!1.00e-07!101;UBERON:0001049!2.33e-07!57;UBERON:0005068!2.33e-07!57;UBERON:0006241!2.33e-07!57;UBERON:0007135!2.33e-07!57;UBERON:0002193!6.44e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.13e-17,76;UBERON:0002405,1.64e-15,93;UBERON:0002390,2.54e-15,98;UBERON:0003061,2.54e-15,98;UBERON:0001474,2.65e-15,82;UBERON:0004765,9.09e-13,90;UBERON:0002193,1.05e-12,108;UBERON:0001434,3.70e-11,100 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0.872338524100369,0,0,0.522371256399677,0,0,0,0,0.618831764800233,0,0,0,0,0.487932798790507,0,0,0.313454721478088,0.85870796139317,0.273748850145768,0.627713197974014,6.80079311156766,8.53846130279436,6.21815172378066,10.2274711980715,8.44424675813868,61.4620009564822,0,0,0,0.774672005803016,0.426507697462265,26.1304391008014,72.0194031091441,5.61524452916397,89.1914678642151,0.223915474239924,0,0,3.63495596948912,3.02300754951048,3.88134497900506,3.48643555358527,6.57868620834921,7.43295290148249,22.1523142088056,10.246428261164,10.4052181150977,22.0637235671436,6.45484683583826,10.8341189275473,3.57660445130949,3.0019676506363,4.94391665779186,52.3403455954243,14.4418062184242,31.327519164153,1.64925650093358,7.77908264724364,2.13112375266347,11.3181603065148,18.7237124148076,20.553134216854,7.5374599577023,14.6015217157656,20.6329402469861,2.42159801053347,6.2607198117886,47.4693581161327,1.05627643155971,9.99240209835705,3.98351426465914,4.6054738770063,2.4028302854641,0.16072558669708,3.70516566863623,4.17725022118089,2.00930569141097,0,8.19207916893197,1.77901850772711,0,0,1.14950487990897,2.64417949113945,2.86216126360609,5.69212969109448,2.93618594685469,19.1136614062614,0,0,15.2762769169545,10.0321982758055,1.17903228824749,0.616804496998528,1.5046784585161,6.51844533267181,2.36723902867367,0,3.34231370655521,1.76763544484902,1.77227115666897,0.541607727530031,8.06975314271754,4.94225520727537,4.76869923350661,1.10540007114339,0.289803085735052,1.4828656316206,0.802622484269139,0,1.35971211237079,3.44898444241729,2.40539211837841,0.506039384039006,0,0,0,0,0.127986611154418,0,1.18388626022008,0.821127996921047,11.8947978502592,2.67440195783507,23.751202236779,0,1.34140171940727,0.255725123687061,0,0,0.144846518960824,0,0.973269740605272,0.850813354476611,0,0.351339142772504,1.70272798147026,0,0,0.324547393654683,0.174129737299267,0.531831842075461,17.1713249499846,7.43593384014166,0,0.198762407366705,0.860234595106124,0.347140501607594,0,0,1.37559020970034,2.08994966536811,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,18.397996495906,0.949265659568129,0.916008719652036,1.31780417436063,0,0,0,0.633152558322899,1.32409180813219,0,0,0.560677600142307,0,0.98667019366864,0,0,0,0.151357427644931,0,0,0.312160076830321,0,0,0.117434498643765,0,0,0.204154171254893,0.245668634623536,0.309977343527296,0,0,0,0,0,0.750711119231785,0.277064115484183,1.75591048352335,0.919463387397059,0,1.13432183160021,0.179389635688862,1.2813443329114,0.211931901159562,0.300091096084402,0,0,0.18611685633159,0.168776332241266,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0.573609190778008,0.243947412259191,0,0,0,1.26160425437814,0.72995471815166,0,0,0,0,0,0.591534000199219,0.674338760312407,0.241011029883482,1.43382164552112,0.435758888184812,0.949082476444386,0.404493924480493,0.392442930250692,0.769494313892781,0,0,0,0,0,0,2.36315962672562,0.441463099414651,1.72183813960359,0.514703430895577,0,1.1240175325762,0.301586917234893,0.555530670951178,0,0,0,0,0.234817388471643,0.288732895522148,0,0.190254152234598,3.95102198979638,5.15091697256924,0,0,0,0,0,0,0.447792613514241,0.290633938513962,1.15014803749563,0,2.64145302039678,8.29312462163088,9.94427678577034,12.4980009092116,0.507983154337352,0.763976851116555,0,0,0.205654985406647,0,0.285826432630578,0,0,0.4400297149257,0,0,0.845302752556,0,0,0.771622122786426,0,0,0.57191197463259,0,0,0.325736184293735,0.710783897485092,0.791951872933429,0.301439377059586,0,0.199945982364114,1.2162378064119,0,0,0,0,1.42636905040718,0.434343920002738,0,0,7.06136407159222,25.6139988262505,9.70324086867828,47.6152664597866,0,0,0.773288812777695,0.837581326671744,8.93114252314428,0,0,0,0.613457458595699,1.00034104211935,0,0,0.892144943985809,0.473107245101804,0.702848489956279,0.300946099727719,2.27407504055985,2.0694614258501,0.664225598535437,1.10621501125022,1.21637060255316,0,0,2.06768026122887,5.60856922128404,0.426910231213777,3.63753085735511,1.66435439510497,0,0.248107807818777,0.460385919864187,0,0.256278298511402,0,0,0,0,0.710246901252508,0,0,0,3.38406458856542,0.40101294060657,2.4861867012692,0.574072240823034,0,0,0,0.308061348417659,0,0,0,0,0,0.215915916102139,0,0.812839312631559,0.501689773854853,0.254876273045038,0,0.223874754722178,0.877039506583738,3.66009631434861,0.769350375349168,0,0,0.9273691048295,0.0915694648183434,0.082509499920588,0,1.30012049207304,0,0.676695028044854,0.308097234229289,0,0,0.322260734604821,0,0.596586391912706,0.979352392114111,0.165284915360978,0.192190067365106,4.33883222481586,1.4162089319777,0,0.31481234683064,2.0911118104818,0,0,0,0.9266210955196,0,0,0,0.38126038784765,0.511795582622668,0,0,0,0,0.274537029736055,0.353437207037059,0.404364963146632,0,0,0,0.243713489631284,0,0,1.1312434556297,1.13008116620243,0.551365343546124,0,0.438450885253763,0,0,0.405820753925408,1.8589409885985,0.281695602532241,0.143411352204052,0.0982490410131212,0.35667105148125,1.06428319221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| ||
|short_description=p1@RNU7-1,p4@C12orf57 | |short_description=p1@RNU7-1,p4@C12orf57 | ||
}} | }} |
Latest revision as of 07:54, 20 September 2015
Short description: | p1@RNU7-1, p4@C12orf57 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNU7-1_5end, CAGE_peak_4_at_C12orf57_5end |
Coexpression cluster: | C898_CD14_Mast_Basophils_Natural_CD19_immature_CD8 |
Association with transcript: | 0bp_to_ENST00000458811, ENST00000544681_5end |
EntrezGene: | C12orf57 |
HGNC: | 29521&submit=Submit 34033, 29521 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 1.30e-29 | 120 |
leukocyte | 2.75e-29 | 136 |
classical monocyte | 8.32e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.32e-29 | 42 |
nongranular leukocyte | 2.89e-27 | 115 |
hematopoietic stem cell | 1.83e-25 | 168 |
hematopoietic oligopotent progenitor cell | 2.21e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.21e-24 | 161 |
defensive cell | 7.05e-24 | 48 |
phagocyte | 7.05e-24 | 48 |
hematopoietic cell | 2.67e-22 | 177 |
granulocyte monocyte progenitor cell | 1.10e-20 | 67 |
myeloid leukocyte | 4.88e-20 | 72 |
myeloid lineage restricted progenitor cell | 6.14e-20 | 66 |
macrophage dendritic cell progenitor | 2.78e-19 | 61 |
monopoietic cell | 5.50e-18 | 59 |
monocyte | 5.50e-18 | 59 |
monoblast | 5.50e-18 | 59 |
promonocyte | 5.50e-18 | 59 |
myeloid cell | 9.94e-15 | 108 |
common myeloid progenitor | 9.94e-15 | 108 |
lymphocyte | 1.78e-09 | 53 |
common lymphoid progenitor | 1.78e-09 | 53 |
lymphoid lineage restricted progenitor cell | 5.40e-09 | 52 |
intermediate monocyte | 5.89e-07 | 9 |
CD14-positive, CD16-positive monocyte | 5.89e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.13e-17 | 76 |
immune system | 1.64e-15 | 93 |
hematopoietic system | 2.54e-15 | 98 |
blood island | 2.54e-15 | 98 |
bone element | 2.65e-15 | 82 |
skeletal element | 9.09e-13 | 90 |
hemolymphoid system | 1.05e-12 | 108 |
skeletal system | 3.70e-11 | 100 |