FFCP PHASE1:Hg19::chr4:108746248..108746278,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=166929 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28395 | |||
|TSSclassifier=strong | |||
|UniProt=E5RJU3 | |||
|association_with_transcript=-85bp_to_ENST00000503862_5end | |||
|cluster_id=chr4:108746248..108746278,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_9_at_SGMS2_5end | |||
|id=chr4:108746248..108746278,+ | |||
|ontology_enrichment_celltype=CL:0002057!9.51e-20!42;CL:0000860!3.65e-18!45;CL:0000557!6.98e-14!71;CL:0000839!2.74e-13!70;CL:0002009!3.03e-13!65;CL:0002194!4.26e-13!63;CL:0000576!4.26e-13!63;CL:0000040!4.26e-13!63;CL:0000559!4.26e-13!63;CL:0000766!1.95e-12!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.99e-55;33!CL:0002057;8.99e-55;33!CL:0000473;1.41e-42;39!CL:0000234;1.41e-42;39!CL:0000576;3.16e-29;48!CL:0000766;2.19e-23;69!CL:0002087;2.80e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.70e-51,42;CL:0002057,5.70e-51,42;CL:0000473,1.87e-48,48;CL:0000234,1.87e-48,48;CL:0002009,6.98e-40,61;CL:0000557,1.73e-39,67;CL:0002194,9.09e-38,59;CL:0000576,9.09e-38,59;CL:0000040,9.09e-38,59;CL:0000559,9.09e-38,59;CL:0000839,8.99e-37,66;CL:0000766,2.53e-33,72;CL:0000763,1.30e-22,108;CL:0000049,1.30e-22,108;CL:0002031,7.72e-20,120;CL:0002087,3.91e-17,115;CL:0000738,6.75e-17,136;CL:0002032,1.81e-13,161;CL:0000837,1.81e-13,161;CL:0000988,5.38e-13,177;CL:0000037,1.08e-12,168 | |||
|ontology_enrichment_development_v019=CL:0002057;2.29e-39;42!CL:0000049;3.20e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.92e-14!448;UBERON:0004120!1.92e-14!448;UBERON:0006603!1.92e-14!448;UBERON:0001474!1.70e-13!86;UBERON:0002371!4.14e-12!80;UBERON:0004765!4.42e-11!101;UBERON:0001434!4.42e-11!101;UBERON:0003081!7.21e-10!216;UBERON:0002193!7.86e-10!112;UBERON:0002390!1.36e-09!102;UBERON:0003061!1.36e-09!102;UBERON:0002204!1.08e-08!167;UBERON:0000468!3.50e-08!659;UBERON:0000467!7.04e-08!625;UBERON:0000480!9.09e-08!626;UBERON:0002050!9.12e-08!605;UBERON:0005423!9.12e-08!605;UBERON:0000923!1.65e-07!604;UBERON:0005291!1.65e-07!604;UBERON:0006598!1.65e-07!604;UBERON:0002532!1.65e-07!604;UBERON:0000922!1.65e-07!612;UBERON:0002405!5.60e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.72e-37,76;UBERON:0001474,3.41e-34,82;UBERON:0002390,9.62e-33,98;UBERON:0003061,9.62e-33,98;UBERON:0004765,1.06e-30,90;UBERON:0002405,1.53e-29,93;UBERON:0002193,3.36e-29,108;UBERON:0001434,4.13e-27,100;UBERON:0002204,4.02e-20,167;UBERON:0003081,9.45e-17,203;UBERON:0000926,1.75e-14,315;UBERON:0004120,1.75e-14,315;UBERON:0006603,1.75e-14,315 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.422863212287913,0,0.446961094427288,0,0,0.631719873426831,0,0.491467873003018,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0.369754010166788,0,0,0,0,0.200544447470142,1.08505435357926,0,0,0,0.290796477559129,1.51150377475524,0.970336244751265,0.464858073811369,2.46700732813095,1.85823822537062,0.863077176966451,1.5369642391746,2.36482229888585,3.10271112662957,3.22742341791913,6.77132432971709,0.752969358170419,1.36453075028923,1.57306439111559,0.612167784741805,2.56743221660875,0.639337125799041,0,0.997318288108159,1.70489900213078,1.16083695451434,1.70215567407342,0,2.76373531782418,4.17186334736161,3.9093992046921,1.21079900526674,2.57794345191295,2.53169909952708,0,0,0.419317291016752,0.22465726229299,0.600707571366025,0.32145117339416,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.434539556882471,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.0654895377488563,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0.694281003215189,0,0.419499436209906,0,0.208994966536811,0,0.71153252537342,0,0,0,0,1.10298924103761,0,0.357198913136319,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0.993943903390637,0.25326102332916,0.397227542439656,0.860509862246441,0.354668382198357,0,0,0.49333509683432,0.311211035399766,0.404132016209064,0.653847612453835,0.151357427644931,0,0,0,0,0.149448680551801,0.117434498643765,0.323745888736263,0,0.61246251376468,0.122834317311768,0.309977343527296,0,0.247266929278557,0.910161361938026,0,0,0,0.277064115484183,0,0.612975591598039,0.300476117813194,0.226864366320042,0,0,0,0,0,0.257640540045629,0,0,0.194874010322397,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0.286804595389004,0.121973706129595,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0.352226082707465,0.144366447761074,0,0,0,0,0.246217006087397,1.40402559083543,0.297262324577456,0,0.16798212819886,0,0,0,0,36.4570796042998,0.088048434013226,0,0.288239906833923,0.37872730027914,0,0,0,0,0.102827492703324,0,0,0,0,0.22001485746285,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0.502257091432126,0,0.239624855491583,0,1.42636905040718,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0,0.271265023699736,0.623912584592421,0.356857977594324,0.473107245101804,0.234282829985426,1.20378439891088,0,0,0,0.184369168541703,0.173767228936166,0,0.343143423810856,0,0,0,0,0,0,0,0,0.280660094433074,0.512556597022804,1.53512174720011,0.804269605718038,0,0.154209693802656,0.177561725313127,0,0,0,0,0,0.184161977871793,0.34444334449382,0.182091168006717,0.917870904715969,0.451199612907412,0.0770153371044148,0,0,0,0,0.340187410553031,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.309123034943167,0.183138929636687,0.247528499761764,0,0,0,0,0.308097234229289,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.534192213880424,0,0.192190067365106,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0.572499546967965,0,0,1.14378116354295,0,1.28381696410176,0.636406495851874,0,0,0.54907405947211,0.117812402345686,0,1.58510321173008,0.421258456238981,0,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0,0,0.573645408816206,0.196498082026242,0.35667105148125,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0.507447609232169,0,0,0.476463550915578,0,0,1.08006287447623,0,0,0.962479855263359,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0.614321404198464,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0.359473404589307,0,0,0.591860433821602,0,1.11136990144637,0,0,0,0,0,0.724999575434793,0.227586896570999,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0.10893846351899,0,0.230850775511391,0.113942055847001,0,0,0,0.638002319463839,0.274792780205587,0.533034776018635,0,0,0.166211681900156,0,0,0,0,0.158936578980379,0.210998064528027,0.326465616318295,0,0,0,0.0884575645033392,0,0.296521128680622,1.11207545051853,0.417687798021821,0.202203398942031,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0.189559738885464,0,0.103688191397247,0,0,0.313932918407225,0,0,0.138674673013139,0.173559738335131,0.0979923974143777,0,0,0,0.0967563312890851,0,0,0.193978032976839,0.529536760149002,0,0,0,0,0,0.0801588202515337,0.85381197895741,0.19980960958213,0,0,0,0,0.124252535565433,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0.859530882839914,0,0.837847203816763,0,0.717873024576814,0.199679000498991,0,0,0.268733889946905,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,1.1248694577575,0,0,0,0.236417121897595,0.209818352539992,0.316801009558219,0,0,0.714695326373367,1.32418394073086,0,2.17199840701485,0.864221491201268,0.326587360109409,0,0,0,0.113312091520126,0,0,0.517131825446202,0,0,0,0.427149650270779,0,1.65695622138878,0.992332043623902,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.235265819698172,0,0,0.298509605773748,0,0.554805861502613,0.568209015825267,0,0,0.457680136793847,0.604923695052956,0.15543720058278,0.295710299979268,0,0,0.155262956876259,0.414706207840855,0.53168342911599,0,0.150257608997218,0.380805212168795,0.406870733204662,0,0.214821114084977,0,0.398095888698616,0,0.686791410365586,0,0,0,0.214441591374926,0,0,0,0.244736704506468,0.179088841081487,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0,0,0,0,0.132864840313363,0,0.327609848846413,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,1.27201740261367,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,0.231051332300676,0.381382095467167,0,0.397832444232549,0.225630985047772,0,0.781514011233092,0,0.163771917510097,0.147856086217045,0,0.781078098613847,0,0,0,0,0.992422356778588,0,0.255524855279191,0,0,0,0.455324382702595,0.177404740325278,0.115233987555779,0,0.0679697329768317,0.0657727735628491,0.118193840883968,0.111231401892069,0.235479278551542,0,0,0.913158720509496,0,0,0.214429632529969,0,0,0,0,0.207216164163037,0.17071847709395,0.691259661814092,0,0,0.0852134047591577,0.423387050190929,1.14553434272025,0.31020638566432,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.437119121007915,0,0.490296643507811,0.235676547101626,0.588925401344836,0.297046400327086,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865253124247578,0.126166424835079,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0,0,0.224263725161227,0.12729431655633,0,0,0,0.0673520530145875,0.0717222053926763,0.332660356546013,0,0.106727345877715,0,0.538951212639521,0,0.122241444182866,0.406896178315738,0,0,0 | |||
|short_description=p9@SGMS2 | |||
}} |
Latest revision as of 07:44, 20 September 2015
Short description: | p9@SGMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SGMS2_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | -85bp_to_ENST00000503862_5end |
EntrezGene: | SGMS2 |
HGNC: | 28395 |
UniProt: | E5RJU3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.70e-51 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.70e-51 | 42 |
defensive cell | 1.87e-48 | 48 |
phagocyte | 1.87e-48 | 48 |
macrophage dendritic cell progenitor | 6.98e-40 | 61 |
granulocyte monocyte progenitor cell | 1.73e-39 | 67 |
monopoietic cell | 9.09e-38 | 59 |
monocyte | 9.09e-38 | 59 |
monoblast | 9.09e-38 | 59 |
promonocyte | 9.09e-38 | 59 |
myeloid lineage restricted progenitor cell | 8.99e-37 | 66 |
myeloid leukocyte | 2.53e-33 | 72 |
myeloid cell | 1.30e-22 | 108 |
common myeloid progenitor | 1.30e-22 | 108 |
hematopoietic lineage restricted progenitor cell | 7.72e-20 | 120 |
nongranular leukocyte | 3.91e-17 | 115 |
leukocyte | 6.75e-17 | 136 |
hematopoietic oligopotent progenitor cell | 1.81e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.81e-13 | 161 |
hematopoietic cell | 5.38e-13 | 177 |
hematopoietic stem cell | 1.08e-12 | 168 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.72e-37 | 76 |
bone element | 3.41e-34 | 82 |
hematopoietic system | 9.62e-33 | 98 |
blood island | 9.62e-33 | 98 |
skeletal element | 1.06e-30 | 90 |
immune system | 1.53e-29 | 93 |
hemolymphoid system | 3.36e-29 | 108 |
skeletal system | 4.13e-27 | 100 |
musculoskeletal system | 4.02e-20 | 167 |
lateral plate mesoderm | 9.45e-17 | 203 |
mesoderm | 1.75e-14 | 315 |
mesoderm-derived structure | 1.75e-14 | 315 |
presumptive mesoderm | 1.75e-14 | 315 |