FFCP PHASE1:Hg19::chr4:108746105..108746178,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=166929 | |EntrezGene=166929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28395 | |HGNC=28395 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=67bp_to_ENST00000515332_5end | |association_with_transcript=67bp_to_ENST00000515332_5end | ||
|cluster_id=chr4:108746105..108746178,+ | |||
|coexpression_cluster_id=C2769 | |coexpression_cluster_id=C2769 | ||
|description=CAGE_peak_1_at_SGMS2_5end | |description=CAGE_peak_1_at_SGMS2_5end | ||
|id=chr4:108746105..108746178,+ | |id=chr4:108746105..108746178,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.96e-15!42;CL:0000860!6.87e-14!45;CL:0000557!2.41e-12!71;CL:0002009!4.43e-12!65;CL:0002194!3.89e-11!63;CL:0000576!3.89e-11!63;CL:0000040!3.89e-11!63;CL:0000559!3.89e-11!63;CL:0000766!4.00e-10!76;CL:0000839!5.20e-10!70 | |ontology_enrichment_celltype=CL:0002057!1.96e-15!42;CL:0000860!6.87e-14!45;CL:0000557!2.41e-12!71;CL:0002009!4.43e-12!65;CL:0002194!3.89e-11!63;CL:0000576!3.89e-11!63;CL:0000040!3.89e-11!63;CL:0000559!3.89e-11!63;CL:0000766!4.00e-10!76;CL:0000839!5.20e-10!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.16e-19;33!CL:0002057;4.16e-19;33!CL:0000473;1.98e-17;39!CL:0000234;1.98e-17;39!CL:0000576;9.95e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.09e-17,48;CL:0000234,2.09e-17,48;CL:0000860,1.61e-15,42;CL:0002057,1.61e-15,42;CL:0000557,3.14e-12,67;CL:0002009,3.97e-12,61;CL:0002194,3.88e-11,59;CL:0000576,3.88e-11,59;CL:0000040,3.88e-11,59;CL:0000559,3.88e-11,59;CL:0000839,4.95e-10,66;CL:0000766,1.45e-09,72 | |||
|ontology_enrichment_development_v019=CL:0002057;8.94e-12;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!3.57e-24!448;UBERON:0004120!3.57e-24!448;UBERON:0006603!3.57e-24!448;UBERON:0000480!1.12e-19!626;UBERON:0000467!2.23e-19!625;UBERON:0000468!8.65e-19!659;UBERON:0002204!2.60e-18!167;UBERON:0000062!5.25e-16!511;UBERON:0000923!4.73e-15!604;UBERON:0005291!4.73e-15!604;UBERON:0006598!4.73e-15!604;UBERON:0002532!4.73e-15!604;UBERON:0002050!6.22e-15!605;UBERON:0005423!6.22e-15!605;UBERON:0004765!1.29e-14!101;UBERON:0001434!1.29e-14!101;UBERON:0000922!1.34e-13!612;UBERON:0001474!2.17e-12!86;UBERON:0002371!8.33e-12!80;UBERON:0003081!4.30e-09!216;UBERON:0002390!6.54e-07!102;UBERON:0003061!6.54e-07!102;UBERON:0002405!7.88e-07!115 | |ontology_enrichment_uberon=UBERON:0000926!3.57e-24!448;UBERON:0004120!3.57e-24!448;UBERON:0006603!3.57e-24!448;UBERON:0000480!1.12e-19!626;UBERON:0000467!2.23e-19!625;UBERON:0000468!8.65e-19!659;UBERON:0002204!2.60e-18!167;UBERON:0000062!5.25e-16!511;UBERON:0000923!4.73e-15!604;UBERON:0005291!4.73e-15!604;UBERON:0006598!4.73e-15!604;UBERON:0002532!4.73e-15!604;UBERON:0002050!6.22e-15!605;UBERON:0005423!6.22e-15!605;UBERON:0004765!1.29e-14!101;UBERON:0001434!1.29e-14!101;UBERON:0000922!1.34e-13!612;UBERON:0001474!2.17e-12!86;UBERON:0002371!8.33e-12!80;UBERON:0003081!4.30e-09!216;UBERON:0002390!6.54e-07!102;UBERON:0003061!6.54e-07!102;UBERON:0002405!7.88e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.26e-07;10!UBERON:0000158;4.26e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.73e-18,167;UBERON:0000926,9.01e-16,315;UBERON:0004120,9.01e-16,315;UBERON:0006603,9.01e-16,315;UBERON:0001434,1.22e-14,100;UBERON:0004765,1.96e-13,90;UBERON:0001474,3.05e-12,82;UBERON:0002371,1.23e-11,76;UBERON:0005423,2.40e-09,581;UBERON:0002050,3.33e-09,564;UBERON:0000923,7.24e-09,560;UBERON:0010316,7.24e-09,560;UBERON:0005291,7.24e-09,560;UBERON:0006598,7.24e-09,560;UBERON:0010317,7.24e-09,560;UBERON:0002532,7.24e-09,560;UBERON:0003081,1.54e-08,203;UBERON:0000922,7.14e-08,592;UBERON:0002405,8.26e-08,93 | |||
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| ||
|short_description=p1@SGMS2 | |short_description=p1@SGMS2 | ||
}} | }} |
Latest revision as of 07:44, 20 September 2015
Short description: | p1@SGMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SGMS2_5end |
Coexpression cluster: | C2769_CD14_amniotic_chorionic_immature_Mast_Smooth_granulosa |
Association with transcript: | 67bp_to_ENST00000515332_5end |
EntrezGene: | SGMS2 |
HGNC: | 28395 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.09e-17 | 48 |
phagocyte | 2.09e-17 | 48 |
classical monocyte | 1.61e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.61e-15 | 42 |
granulocyte monocyte progenitor cell | 3.14e-12 | 67 |
macrophage dendritic cell progenitor | 3.97e-12 | 61 |
monopoietic cell | 3.88e-11 | 59 |
monocyte | 3.88e-11 | 59 |
monoblast | 3.88e-11 | 59 |
promonocyte | 3.88e-11 | 59 |
myeloid lineage restricted progenitor cell | 4.95e-10 | 66 |
myeloid leukocyte | 1.45e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.73e-18 | 167 |
mesoderm | 9.01e-16 | 315 |
mesoderm-derived structure | 9.01e-16 | 315 |
presumptive mesoderm | 9.01e-16 | 315 |
skeletal system | 1.22e-14 | 100 |
skeletal element | 1.96e-13 | 90 |
bone element | 3.05e-12 | 82 |
bone marrow | 1.23e-11 | 76 |
developing anatomical structure | 2.40e-09 | 581 |
embryonic structure | 3.33e-09 | 564 |
germ layer | 7.24e-09 | 560 |
germ layer / neural crest | 7.24e-09 | 560 |
embryonic tissue | 7.24e-09 | 560 |
presumptive structure | 7.24e-09 | 560 |
germ layer / neural crest derived structure | 7.24e-09 | 560 |
epiblast (generic) | 7.24e-09 | 560 |
lateral plate mesoderm | 1.54e-08 | 203 |
embryo | 7.14e-08 | 592 |
immune system | 8.26e-08 | 93 |