FFCP PHASE1:Hg19::chr16:12059091..12059102,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=608 | |EntrezGene=608 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11913 | |HGNC=11913 | ||
|TSSclassifier=strong | |||
|UniProt=Q2TQ40 | |UniProt=Q2TQ40 | ||
|association_with_transcript=11bp_to_ENST00000396495_5end | |association_with_transcript=11bp_to_ENST00000396495_5end | ||
|cluster_id=chr16:12059091..12059102,+ | |||
|coexpression_cluster_id=C1196 | |coexpression_cluster_id=C1196 | ||
|description=CAGE_peak_3_at_TNFRSF17_5end | |description=CAGE_peak_3_at_TNFRSF17_5end | ||
|id=chr16:12059091..12059102,+ | |id=chr16:12059091..12059102,+ | ||
|ontology_enrichment_celltype=CL:0000945!4.28e-55!24;CL:0000826!4.28e-55!24;CL:0000236!2.61e-31!14;CL:0000542!2.88e-26!53;CL:0000051!2.88e-26!53;CL:0000838!2.24e-24!52;CL:0002087!4.58e-11!119;CL:0000738!2.93e-10!140;CL:0000784!1.15e-09!3;CL:0002031!1.76e-08!124;CL:0000785!2.12e-07!2;CL:0000955!2.12e-07!2;CL:0000818!2.12e-07!2;CL:0000954!2.12e-07!2;CL:0000816!2.12e-07!2;CL:0000037!3.97e-07!172;CL:0000566!3.97e-07!172 | |ontology_enrichment_celltype=CL:0000945!4.28e-55!24;CL:0000826!4.28e-55!24;CL:0000236!2.61e-31!14;CL:0000542!2.88e-26!53;CL:0000051!2.88e-26!53;CL:0000838!2.24e-24!52;CL:0002087!4.58e-11!119;CL:0000738!2.93e-10!140;CL:0000784!1.15e-09!3;CL:0002031!1.76e-08!124;CL:0000785!2.12e-07!2;CL:0000955!2.12e-07!2;CL:0000818!2.12e-07!2;CL:0000954!2.12e-07!2;CL:0000816!2.12e-07!2;CL:0000037!3.97e-07!172;CL:0000566!3.97e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.82e-87;24!CL:0000236;7.81e-45;13!CL:0000542;4.83e-26;53!CL:0000946;2.76e-07;1!CL:0000786;2.76e-07;1!CL:0000785;5.18e-07;1!CL:0000819;5.18e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,8.38e-87,24;CL:0000826,8.38e-87,24;CL:0000236,3.94e-50,14;CL:0000542,2.75e-41,53;CL:0000051,2.75e-41,53;CL:0000838,6.59e-38,52;CL:0002087,1.49e-16,115;CL:0000738,6.13e-15,136;CL:0002031,5.56e-14,120;CL:0000785,1.15e-12,2;CL:0000955,1.15e-12,2;CL:0000818,1.15e-12,2;CL:0000954,1.15e-12,2;CL:0000816,1.15e-12,2;CL:0000037,2.83e-11,168;CL:0002032,1.18e-10,161;CL:0000837,1.18e-10,161;CL:0000988,1.75e-10,177;CL:0000817,9.78e-09,3;CL:0000946,2.67e-07,1;CL:0000786,2.67e-07,1;CL:0000980,2.67e-07,1;CL:0000819,4.89e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;4.83e-26;53!CL:0000954;1.25e-12;2!UBERON:0001045;3.21e-07;1!UBERON:0006298;5.18e-07;1 | |||
|ontology_enrichment_disease=DOID:0060058!9.45e-08!10 | |ontology_enrichment_disease=DOID:0060058!9.45e-08!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;9.90e-10;10!DOID:4960;2.16e-07;1!DOID:0070004;2.16e-07;1!DOID:630;2.44e-07;1!DOID:0050177;2.44e-07;1!DOID:0050427;2.44e-07;1!DOID:12603;3.21e-07;1!DOID:0060073;5.18e-07;1!DOID:8675;5.18e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.09e-09,10;DOID:4960,2.23e-07,1;DOID:0070004,2.23e-07,1;DOID:630,2.52e-07,1;DOID:0050177,2.52e-07,1;DOID:0050427,2.52e-07,1;DOID:12603,3.41e-07,1;DOID:0060073,4.89e-07,1;DOID:8675,4.89e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.33e-20!115;UBERON:0002106!9.33e-10!3;UBERON:0004854!9.33e-10!3;UBERON:0009034!9.33e-10!3;UBERON:0002095!9.33e-10!3;UBERON:0004782!9.33e-10!3;UBERON:0003281!9.33e-10!3;UBERON:0009664!9.33e-10!3;UBERON:0002296!9.33e-10!3;UBERON:0005602!9.33e-10!3;UBERON:0001179!9.33e-10!3;UBERON:0006293!9.33e-10!3;UBERON:0001829!4.19e-07!2;UBERON:0004177!5.24e-07!7 | |ontology_enrichment_uberon=UBERON:0007023!1.33e-20!115;UBERON:0002106!9.33e-10!3;UBERON:0004854!9.33e-10!3;UBERON:0009034!9.33e-10!3;UBERON:0002095!9.33e-10!3;UBERON:0004782!9.33e-10!3;UBERON:0003281!9.33e-10!3;UBERON:0009664!9.33e-10!3;UBERON:0002296!9.33e-10!3;UBERON:0005602!9.33e-10!3;UBERON:0001179!9.33e-10!3;UBERON:0006293!9.33e-10!3;UBERON:0001829!4.19e-07!2;UBERON:0004177!5.24e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;8.03e-09;3!UBERON:0001154;3.21e-07;1!UBERON:0001153;3.21e-07;1!UBERON:0009854;3.21e-07;1!UBERON:0002372;5.18e-07;1!UBERON:0001736;5.18e-07;1!UBERON:0001961;5.18e-07;1!UBERON:0001744;5.18e-07;1!UBERON:0001042;5.18e-07;1!UBERON:0001735;5.18e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.03e-09,3;UBERON:0004854,8.03e-09,3;UBERON:0009034,8.03e-09,3;UBERON:0002095,8.03e-09,3;UBERON:0004782,8.03e-09,3;UBERON:0003281,8.03e-09,3;UBERON:0009664,8.03e-09,3;UBERON:0002296,8.03e-09,3;UBERON:0005602,8.03e-09,3;UBERON:0001179,8.03e-09,3;UBERON:0006293,8.03e-09,3;UBERON:0005409,1.53e-07,25;UBERON:0001154,3.02e-07,1;UBERON:0001153,3.02e-07,1;UBERON:0001045,3.02e-07,1;UBERON:0001736,3.85e-07,1;UBERON:0006298,3.85e-07,1;UBERON:0002372,5.84e-07,1;UBERON:0001961,5.84e-07,1;UBERON:0001744,5.84e-07,1;UBERON:0001735,5.84e-07,1 | |||
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| ||
|short_description=p3@TNFRSF17 | |short_description=p3@TNFRSF17 | ||
}} | }} |
Latest revision as of 07:43, 20 September 2015
Short description: | p3@TNFRSF17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TNFRSF17_5end |
Coexpression cluster: | C1196_lymphoma_CD19_diffuse_lymphangiectasia_B_xeroderma_b |
Association with transcript: | 11bp_to_ENST00000396495_5end |
EntrezGene: | TNFRSF17 |
HGNC: | 11913 |
UniProt: | Q2TQ40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 8.38e-87 | 24 |
pro-B cell | 8.38e-87 | 24 |
B cell | 3.94e-50 | 14 |
lymphocyte | 2.75e-41 | 53 |
common lymphoid progenitor | 2.75e-41 | 53 |
lymphoid lineage restricted progenitor cell | 6.59e-38 | 52 |
nongranular leukocyte | 1.49e-16 | 115 |
leukocyte | 6.13e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 5.56e-14 | 120 |
mature B cell | 1.15e-12 | 2 |
pre-B-II cell | 1.15e-12 | 2 |
transitional stage B cell | 1.15e-12 | 2 |
small pre-B-II cell | 1.15e-12 | 2 |
immature B cell | 1.15e-12 | 2 |
hematopoietic stem cell | 2.83e-11 | 168 |
hematopoietic oligopotent progenitor cell | 1.18e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.18e-10 | 161 |
hematopoietic cell | 1.75e-10 | 177 |
precursor B cell | 9.78e-09 | 3 |
antibody secreting cell | 2.67e-07 | 1 |
plasma cell | 2.67e-07 | 1 |
plasmablast | 2.67e-07 | 1 |
B-1 B cell | 4.89e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.03e-09 | 3 |
gastrointestinal system mesentery | 8.03e-09 | 3 |
stomach region | 8.03e-09 | 3 |
mesentery | 8.03e-09 | 3 |
gastrointestinal system serosa | 8.03e-09 | 3 |
mesentery of stomach | 8.03e-09 | 3 |
gut mesentery | 8.03e-09 | 3 |
dorsal mesentery | 8.03e-09 | 3 |
dorsal mesogastrium | 8.03e-09 | 3 |
peritoneal cavity | 8.03e-09 | 3 |
spleen primordium | 8.03e-09 | 3 |
gastrointestinal system | 1.53e-07 | 25 |
vermiform appendix | 3.02e-07 | 1 |
caecum | 3.02e-07 | 1 |
midgut | 3.02e-07 | 1 |
submandibular gland | 3.85e-07 | 1 |
submandibular gland primordium | 3.85e-07 | 1 |
tonsil | 5.84e-07 | 1 |
mucosa-associated lymphoid tissue | 5.84e-07 | 1 |
lymphoid tissue | 5.84e-07 | 1 |
tonsillar ring | 5.84e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.09e-09 | 10 |
bone marrow cancer | 2.23e-07 | 1 |
myeloma | 2.23e-07 | 1 |
genetic disease | 2.52e-07 | 1 |
monogenic disease | 2.52e-07 | 1 |
xeroderma pigmentosum | 2.52e-07 | 1 |
acute leukemia | 3.41e-07 | 1 |
lymphatic system cancer | 4.89e-07 | 1 |
lymphosarcoma | 4.89e-07 | 1 |