FFCP PHASE1:Hg19::chr4:108745993..108746041,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:108745993..108746041,+
|short_description=p5@SGMS2
|description=CAGE_peak_5_at_SGMS2_5end
|association_with_transcript=0bp_to_ENST00000515332_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=166929 | |EntrezGene=166929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28395 | |HGNC=28395 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000515332_5end | |||
|cluster_id=chr4:108745993..108746041,+ | |||
|coexpression_cluster_id=C2769 | |||
|description=CAGE_peak_5_at_SGMS2_5end | |||
|id=chr4:108745993..108746041,+ | |||
|ontology_enrichment_celltype=CL:0000548!3.11e-16!679;CL:0000004!3.11e-16!679;CL:0000255!3.11e-16!679;CL:0000012!6.45e-16!682;CL:0002371!8.94e-14!591;CL:0002057!2.56e-13!42;CL:0000860!1.53e-12!45;CL:0000144!3.62e-12!625;CL:0000063!1.26e-11!578;CL:0000055!1.30e-08!180;CL:0002009!1.40e-07!65;CL:0000003!2.33e-07!722;CL:0000557!3.46e-07!71;CL:0000057!6.47e-07!75;CL:0000220!7.59e-07!246;CL:0002194!8.57e-07!63;CL:0000576!8.57e-07!63;CL:0000040!8.57e-07!63;CL:0000559!8.57e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.09e-18;33!CL:0002057;4.09e-18;33!CL:0000473;7.01e-13;39!CL:0000234;7.01e-13;39!CL:0000576;4.16e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.07e-14,42;CL:0002057,5.07e-14,42;CL:0000473,2.17e-12,48;CL:0000234,2.17e-12,48;CL:0002009,2.06e-08,61;CL:0000557,1.21e-07,67;CL:0000057,1.60e-07,76;CL:0002194,1.62e-07,59;CL:0000576,1.62e-07,59;CL:0000040,1.62e-07,59;CL:0000559,1.62e-07,59;CL:0000723,1.88e-07,433;CL:0000048,2.96e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;4.25e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!9.29e-23!448;UBERON:0004120!9.29e-23!448;UBERON:0006603!9.29e-23!448;UBERON:0000467!1.44e-17!625;UBERON:0000480!1.79e-17!626;UBERON:0002204!4.56e-16!167;UBERON:0000468!1.48e-14!659;UBERON:0000923!1.16e-10!604;UBERON:0005291!1.16e-10!604;UBERON:0006598!1.16e-10!604;UBERON:0002532!1.16e-10!604;UBERON:0002050!1.48e-10!605;UBERON:0005423!1.48e-10!605;UBERON:0000062!2.86e-10!511;UBERON:0000922!1.13e-09!612;UBERON:0004765!1.60e-09!101;UBERON:0001434!1.60e-09!101;UBERON:0003081!2.75e-09!216;UBERON:0001474!1.28e-08!86;UBERON:0000914!7.60e-08!83;UBERON:0002329!7.60e-08!83;UBERON:0003077!7.60e-08!83;UBERON:0003059!7.60e-08!83;UBERON:0007282!7.60e-08!83;UBERON:0009618!7.60e-08!83;UBERON:0007285!7.60e-08!83;UBERON:0002371!1.35e-07!80;UBERON:0000486!2.62e-07!82;UBERON:0002100!7.73e-07!216;UBERON:0003914!9.21e-07!118 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.04e-14,167;UBERON:0000926,2.38e-11,315;UBERON:0004120,2.38e-11,315;UBERON:0006603,2.38e-11,315;UBERON:0001434,4.33e-09,100;UBERON:0004765,4.46e-09,90;UBERON:0001474,4.75e-09,82;UBERON:0002371,6.30e-08,76;UBERON:0003081,3.90e-07,203 | |||
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| ||
|short_description=p5@SGMS2 | |||
}} | }} |
Latest revision as of 07:40, 20 September 2015
Short description: | p5@SGMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SGMS2_5end |
Coexpression cluster: | C2769_CD14_amniotic_chorionic_immature_Mast_Smooth_granulosa |
Association with transcript: | 0bp_to_ENST00000515332_5end |
EntrezGene: | SGMS2 |
HGNC: | 28395 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.07e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.07e-14 | 42 |
defensive cell | 2.17e-12 | 48 |
phagocyte | 2.17e-12 | 48 |
macrophage dendritic cell progenitor | 2.06e-08 | 61 |
granulocyte monocyte progenitor cell | 1.21e-07 | 67 |
fibroblast | 1.60e-07 | 76 |
monopoietic cell | 1.62e-07 | 59 |
monocyte | 1.62e-07 | 59 |
monoblast | 1.62e-07 | 59 |
promonocyte | 1.62e-07 | 59 |
somatic stem cell | 1.88e-07 | 433 |
multi fate stem cell | 2.96e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.04e-14 | 167 |
mesoderm | 2.38e-11 | 315 |
mesoderm-derived structure | 2.38e-11 | 315 |
presumptive mesoderm | 2.38e-11 | 315 |
skeletal system | 4.33e-09 | 100 |
skeletal element | 4.46e-09 | 90 |
bone element | 4.75e-09 | 82 |
bone marrow | 6.30e-08 | 76 |
lateral plate mesoderm | 3.90e-07 | 203 |