FFCP PHASE1:Hg19::chr4:108745881..108745897,+: Difference between revisions
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=166929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=28395 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 07:39, 20 September 2015
| Short description: | p4@SGMS2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_SGMS2_5end |
| Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
| Association with transcript: | -140bp_to_ENST00000515332_5end |
| EntrezGene: | SGMS2 |
| HGNC: | 28395 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@SGMS2 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| classical monocyte | 1.25e-11 | 42 |
| CD14-positive, CD16-negative classical monocyte | 1.25e-11 | 42 |
| defensive cell | 1.09e-08 | 48 |
| phagocyte | 1.09e-08 | 48 |
Showing 1 to 4 of 4 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 1.97e-10 | 160 |
| endoderm | 1.97e-10 | 160 |
| presumptive endoderm | 1.97e-10 | 160 |
| internal genitalia | 1.17e-09 | 25 |
| extraembryonic membrane | 2.34e-09 | 14 |
| membranous layer | 2.34e-09 | 14 |
| digestive system | 3.46e-09 | 145 |
| digestive tract | 3.46e-09 | 145 |
| primitive gut | 3.46e-09 | 145 |
| embryonic uterus | 2.76e-08 | 22 |
Showing 1 to 10 of 19 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 5.72e-13 | 106 |
| squamous cell carcinoma | 1.23e-09 | 14 |
| adenocarcinoma | 1.37e-07 | 25 |
| cell type cancer | 6.34e-07 | 143 |
Showing 1 to 4 of 4 entries
